Metagenome / Metatranscriptome Family F082638

Basic Information
Family ID	F082638
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	41 residues
Representative Sequence	KGDRIAEEFQQIVADYVRATYGGEPPAAHLKPEKKTIGVKAVA
Number of Associated Samples	104
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.23 %
% of genes from short scaffolds (< 2000 bps)	92.92 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (51.327 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (7.080 % of family members)
Environment Ontology (ENVO)	Unclassified (36.283 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.628 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.39% β-sheet: 0.00% Coil/Unstructured: 67.61%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13393	tRNA-synt_His	75.22
PF01128	IspD	7.08
PF09976	TPR_21	3.54
PF00313	CSD	1.77
PF04551	GcpE	1.77
PF08534	Redoxin	0.88
PF10518	TAT_signal	0.88
PF13185	GAF_2	0.88
PF01926	MMR_HSR1	0.88
PF16360	GTP-bdg_M	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0746	Molybdopterin-guanine dinucleotide biosynthesis protein A	Coenzyme transport and metabolism [H]	7.08
COG1207	Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase	Cell wall/membrane/envelope biogenesis [M]	7.08
COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Lipid transport and metabolism [I]	7.08
COG2068	CTP:molybdopterin cytidylyltransferase MocA	Coenzyme transport and metabolism [H]	7.08
COG0821	4-hydroxy-3-methylbut-2-enyl diphosphate synthase IspG/GcpE	Lipid transport and metabolism [I]	1.77

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.33 %
Unclassified	root	N/A	48.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.33 %
Unclassified	root	N/A	48.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.33 %
Unclassified	root	N/A	48.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	30.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7.96 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	5.31 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2.65 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.88 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.31 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.65 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.88 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.88 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.31 %
Hydrogenophaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga	1.77 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.88 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.88 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.31 %
unclassified Hydrogenophaga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga	1.77 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.88 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.88 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.31 %
Hydrogenophaga sp. T4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	1.77 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.88 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.88 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_10082410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1113	Open in IMG/M
3300001593\|JGI12635J15846_10573320	Not Available	659	Open in IMG/M
3300004146\|Ga0055495_10108051	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005171\|Ga0066677_10341843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	857	Open in IMG/M
3300005331\|Ga0070670_100830062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	836	Open in IMG/M
3300005331\|Ga0070670_101124730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	717	Open in IMG/M
3300005331\|Ga0070670_102260672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	501	Open in IMG/M
3300005366\|Ga0070659_101957679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	526	Open in IMG/M
3300005544\|Ga0070686_100349723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1110	Open in IMG/M
3300005552\|Ga0066701_10452968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	796	Open in IMG/M
3300005554\|Ga0066661_10546651	Not Available	694	Open in IMG/M
3300005560\|Ga0066670_10582540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	682	Open in IMG/M
3300005616\|Ga0068852_100864369	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300005617\|Ga0068859_100307368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1679	Open in IMG/M
3300005718\|Ga0068866_10273673	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005843\|Ga0068860_102231367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	568	Open in IMG/M
3300005844\|Ga0068862_100467512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1191	Open in IMG/M
3300005952\|Ga0080026_10106988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	784	Open in IMG/M
3300005993\|Ga0080027_10089038	Not Available	1149	Open in IMG/M
3300006050\|Ga0075028_101083901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	502	Open in IMG/M
3300006605\|Ga0074057_11312075	Not Available	956	Open in IMG/M
3300006606\|Ga0074062_12877836	Not Available	649	Open in IMG/M
3300006796\|Ga0066665_11237071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	571	Open in IMG/M
3300006797\|Ga0066659_10417185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1059	Open in IMG/M
3300006804\|Ga0079221_10227608	Not Available	1042	Open in IMG/M
3300006881\|Ga0068865_100125409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1916	Open in IMG/M
3300006954\|Ga0079219_11469652	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300009053\|Ga0105095_10484280	Not Available	686	Open in IMG/M
3300009101\|Ga0105247_10009581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	5878	Open in IMG/M
3300009137\|Ga0066709_100062205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	4314	Open in IMG/M
3300009165\|Ga0105102_10506916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	656	Open in IMG/M
3300009179\|Ga0115028_10515761	Not Available	872	Open in IMG/M
3300009685\|Ga0116142_10528312	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300010339\|Ga0074046_10455467	Not Available	767	Open in IMG/M
3300010366\|Ga0126379_13022518	Not Available	563	Open in IMG/M
3300010401\|Ga0134121_11717968	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300010403\|Ga0134123_10132470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2035	Open in IMG/M
3300011119\|Ga0105246_11565014	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300012469\|Ga0150984_118045635	Not Available	540	Open in IMG/M
3300012479\|Ga0157348_1018107	Not Available	575	Open in IMG/M
3300012683\|Ga0137398_11131664	Not Available	538	Open in IMG/M
3300012986\|Ga0164304_10219878	Not Available	1253	Open in IMG/M
3300013102\|Ga0157371_10450439	Not Available	946	Open in IMG/M
3300013306\|Ga0163162_10034056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	5067	Open in IMG/M
3300014323\|Ga0075356_1174456	Not Available	566	Open in IMG/M
3300014874\|Ga0180084_1114138	Not Available	565	Open in IMG/M
3300014968\|Ga0157379_11020185	Not Available	789	Open in IMG/M
3300014969\|Ga0157376_11216817	Not Available	782	Open in IMG/M
3300014969\|Ga0157376_11250195	Not Available	772	Open in IMG/M
3300015372\|Ga0132256_103263664	Not Available	545	Open in IMG/M
3300015373\|Ga0132257_101611767	Not Available	830	Open in IMG/M
3300015373\|Ga0132257_103120703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	603	Open in IMG/M
3300016319\|Ga0182033_10978512	Not Available	752	Open in IMG/M
3300016357\|Ga0182032_10874300	Not Available	763	Open in IMG/M
3300017944\|Ga0187786_10364554	Not Available	615	Open in IMG/M
3300017974\|Ga0187777_11299042	Not Available	534	Open in IMG/M
3300018060\|Ga0187765_10677448	Not Available	674	Open in IMG/M
3300018064\|Ga0187773_10114217	Not Available	1349	Open in IMG/M
3300018083\|Ga0184628_10157436	Not Available	1183	Open in IMG/M
3300019362\|Ga0173479_10256387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	773	Open in IMG/M
3300021082\|Ga0210380_10150886	Not Available	1043	Open in IMG/M
3300021478\|Ga0210402_11839317	Not Available	531	Open in IMG/M
3300024347\|Ga0179591_1025951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4341	Open in IMG/M
3300025903\|Ga0207680_10453491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	910	Open in IMG/M
3300025903\|Ga0207680_11132588	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300025903\|Ga0207680_11355471	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300025922\|Ga0207646_10740816	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300025933\|Ga0207706_11567288	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300025936\|Ga0207670_11347437	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300025937\|Ga0207669_10477129	Not Available	993	Open in IMG/M
3300025945\|Ga0207679_11919130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	540	Open in IMG/M
3300025960\|Ga0207651_10006654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	6080	Open in IMG/M
3300026041\|Ga0207639_11236216	Not Available	701	Open in IMG/M
3300026078\|Ga0207702_11418632	Not Available	688	Open in IMG/M
3300026310\|Ga0209239_1094676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1274	Open in IMG/M
3300026335\|Ga0209804_1296208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	553	Open in IMG/M
3300027885\|Ga0209450_10312241	Not Available	1137	Open in IMG/M
3300027900\|Ga0209253_10774326	Not Available	685	Open in IMG/M
3300028381\|Ga0268264_12102376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	573	Open in IMG/M
3300028590\|Ga0247823_10753552	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300028665\|Ga0302160_10085015	Not Available	680	Open in IMG/M
3300028679\|Ga0302169_10129184	Not Available	626	Open in IMG/M
3300028736\|Ga0302214_1065673	Not Available	750	Open in IMG/M
3300028743\|Ga0302262_10232556	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300028856\|Ga0302295_1116645	Not Available	601	Open in IMG/M
3300030339\|Ga0311360_10817487	Not Available	740	Open in IMG/M
3300030838\|Ga0311335_10079250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2086	Open in IMG/M
3300031720\|Ga0307469_11523046	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031726\|Ga0302321_100417497	Not Available	1464	Open in IMG/M
3300031726\|Ga0302321_103180398	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031777\|Ga0318543_10472930	Not Available	562	Open in IMG/M
3300031795\|Ga0318557_10307199	Not Available	728	Open in IMG/M
3300031820\|Ga0307473_11479161	Not Available	514	Open in IMG/M
3300031942\|Ga0310916_11274023	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300031943\|Ga0310885_10387884	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300031947\|Ga0310909_10211505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1614	Open in IMG/M
3300031981\|Ga0318531_10353524	Not Available	664	Open in IMG/M
3300031997\|Ga0315278_11138411	Not Available	769	Open in IMG/M
3300031997\|Ga0315278_11903820	Not Available	558	Open in IMG/M
3300032060\|Ga0318505_10493858	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300032060\|Ga0318505_10619441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	508	Open in IMG/M
3300032076\|Ga0306924_11243067	Not Available	803	Open in IMG/M
3300032122\|Ga0310895_10087224	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300032143\|Ga0315292_10671914	Not Available	871	Open in IMG/M
3300032397\|Ga0315287_10391417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1646	Open in IMG/M
3300032401\|Ga0315275_10971115	Not Available	935	Open in IMG/M
3300032770\|Ga0335085_10378334	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300033481\|Ga0316600_10159300	Not Available	1442	Open in IMG/M
3300033483\|Ga0316629_11005392	Not Available	655	Open in IMG/M
3300033485\|Ga0316626_10033981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3330	Open in IMG/M
3300033488\|Ga0316621_11199696	Not Available	573	Open in IMG/M
3300033513\|Ga0316628_101332723	Not Available	956	Open in IMG/M
3300034354\|Ga0364943_0419159	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.68%
Host-Associated	Host-Associated	27.43%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.41%
Plants	Host-Associated → Plants	27.43%
Aquatic	Environmental → Aquatic	13.27%
Wastewater	Engineered → Wastewater	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.62%
Freshwater	Environmental → Aquatic → Freshwater	9.73%
Peat	Environmental → Terrestrial → Peat	7.96%
Sediment	Environmental → Aquatic → Sediment	2.65%
Marine	Environmental → Aquatic → Marine	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.39%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.96%
Loam	Environmental → Terrestrial → Soil → Loam	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.31%
Lake	Environmental → Aquatic → Freshwater → Lake	4.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.65%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.77%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.31%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.08%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	7.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.31%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.77%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.89%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004146	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009685	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG	Engineered	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012479	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014323	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D1	Environmental	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028736	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_3	Environmental	Open in IMG/M
3300028743	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4	Environmental	Open in IMG/M
3300028856	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_4	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_100824102	3300000443	Soil	EEFQRIVDDYLRATYGGEPRAAHLSPAKKTITVKAIG*
JGI12635J15846_105733201	3300001593	Forest Soil	EFQQIVADYVRATYGGEPATAHLKPTARTNTIAIKAVG*
Ga0055495_101080511	3300004146	Natural And Restored Wetlands	KGERIAEEFQRIVEDYVRATYGGEARAPALDPERRTIALKAHA*
Ga0066677_103418432	3300005171	Soil	TLKGDRIAEEFMAIVTDYIRATYGGEPATAALKPAAKAIDLKALA*
Ga0070670_1008300622	3300005331	Switchgrass Rhizosphere	KGGRIAEEFEALVEAYVRATYGGEPGSPALKPQKKTIAVKAVA*
Ga0070670_1011247302	3300005331	Switchgrass Rhizosphere	TLKGDNIAIEFQRIVDDYVRATYGGEPRAAHLTPEKKSAGKAIA*
Ga0070670_1022606722	3300005331	Switchgrass Rhizosphere	GGRIAEEFEALVDAYVRATYGGEAAPPSLKPQKKTIAVKAVA*
Ga0070659_1019576791	3300005366	Corn Rhizosphere	KTVTLKGAGIAEEFQEIVADYVRSTYGGEPPSAHLKPEKKSIQLKAVG*
Ga0070686_1003497232	3300005544	Switchgrass Rhizosphere	KGDHIAEEFERIVFDYVRATYGGEPAAPHLRPEKKWIGIRHA*
Ga0066701_104529681	3300005552	Soil	ERIAEEFQQIVADYVRATYGGEPPGRHLKPDRKSVAIKAVA*
Ga0066661_105466512	3300005554	Soil	EFIAIVTDYVRATYGGEPATPSLRPAAKSIVLKALA*
Ga0066670_105825402	3300005560	Soil	ERIAEEFQQIVADYVRATYGGEPATAHLKPAARTNTIAIAVKAII*
Ga0068852_1008643691	3300005616	Corn Rhizosphere	LKGDSIAREFQVIVNDYVRATYGGEEPAPHLRPERKVTPIHHA*
Ga0068859_1003073681	3300005617	Switchgrass Rhizosphere	RIAEDFQRIVEDYVRATYGGEARAAHLSPRSKTIAVKALT*
Ga0068866_102736733	3300005718	Miscanthus Rhizosphere	TLKGERIAEEFGRIVDDYVRATYGGETPAPHLRPERKSIAVKAV*
Ga0068860_1022313671	3300005843	Switchgrass Rhizosphere	IGEEFLQIVADYVRATYGGEPSAPHLRPAKRTIAIKNS*
Ga0068862_1004675123	3300005844	Switchgrass Rhizosphere	HKTVTLKGDHIAEEFERIVFDYVRATYGGEPAAPHLRPEKKWIGIRHA*
Ga0080026_101069882	3300005952	Permafrost Soil	LKGERIAEEFQQIVADYVRATYGGEPATAHLKPTARTVPIAIAVKAVV*
Ga0080027_100890381	3300005993	Prmafrost Soil	FHVIVEDYVRATYGGEPPAAHLKPERKSVALKVVA*
Ga0075028_1010839012	3300006050	Watersheds	KGDRIAEEFQALVHDYVRATYGGEEPAAHLKPDRKTIPLKAAV*
Ga0074057_113120752	3300006605	Soil	LRAIVEDYVRATYGGEPAAAHLKPDRKSLALKVVA*
Ga0074062_128778362	3300006606	Soil	EEFQAIVEDYVRATYGGEPPTAHLKPDRKSLALKVIA*
Ga0066665_112370711	3300006796	Soil	LRGERIAEEFQLIVEDYVRATYGGEPPAPHLKPDRKSTALKVVAKVT*
Ga0066659_104171851	3300006797	Soil	KGDRIAEEFIAIVTDYVRATYGGEPATSNLRPAAKSIALKALA*
Ga0079221_102276081	3300006804	Agricultural Soil	EAFQEIVADYVRATYGGEPPSAHLKPEKKSIQLKAVG*
Ga0068865_1001254091	3300006881	Miscanthus Rhizosphere	KTVTLKGERIAEEFEQIVFDYVRATYGGEPAAPHLRPEKKWIGIKHI*
Ga0079219_114696521	3300006954	Agricultural Soil	GERIAEEFQQIVADYVRATYGDEPAAAHLKPEKKSIAVKAIG*
Ga0105095_104842801	3300009053	Freshwater Sediment	KGERIAEEFQRIVEDYVRATYGGEARTSALDPERRTIALKAHA*
Ga0105247_100095817	3300009101	Switchgrass Rhizosphere	VTLKGAGIAEEFQEIVADYVRSTYGGEPPSAHLKPEKKSIQLKAVG*
Ga0066709_1000622051	3300009137	Grasslands Soil	EFIAIVTDYVRATYGGEPATFNLRPTAKSIAVEALAWNRQ*
Ga0105102_105069162	3300009165	Freshwater Sediment	QFQQIVDDYVRATYGGEPRTSALDPDRRTIGVKAVV*
Ga0115028_105157612	3300009179	Wetland	LRGEGIADEFQRIVDDYVRATYGGEPRAAHLTPERRTIGVKSLL*
Ga0116142_105283123	3300009685	Anaerobic Digestor Sludge	FGVIVADYVRATYGGEEPAPHLRPERATIGLKVVTGH*
Ga0074046_104554672	3300010339	Bog Forest Soil	EFQQIIFDYVRATYGGEVPAPHLKPDRQAINVKAIA*
Ga0126379_130225182	3300010366	Tropical Forest Soil	AAEFQRIVDDYVRATYGGEPRAAHLSPEKKATAGKAIA*
Ga0134121_117179681	3300010401	Terrestrial Soil	ERIAEEFQALVHDYVRATYGGESPGPHLKPDRKTIAIKSATAQVP*
Ga0134123_101324701	3300010403	Terrestrial Soil	IAEEFQQLVADYVRSTYGGEPPSAHLKPEKKSIQLKAVG*
Ga0105246_115650141	3300011119	Miscanthus Rhizosphere	TLKGERIAQEFQELVHDYVRATYGGESPGPHLKPDRKTIAIKSATAQVP*
Ga0150984_1180456351	3300012469	Avena Fatua Rhizosphere	QSLVDAYVRSTYGGEPAAPELLPAKKTIAVKAIA*
Ga0157348_10181072	3300012479	Unplanted Soil	KGDDIAAELQRIVDDYVRATYGGEPRDAHLTPEKKTAGKVVA*
Ga0137398_111316641	3300012683	Vadose Zone Soil	RGERIAEEFQLIVEDYVRATYGGEPPAPHLKPDRKSTALKVVAKVT*
Ga0164304_102198781	3300012986	Soil	IAEEFERIVVDYVRATYGGEAKSAALVPQQKTIAVKAIA*
Ga0157371_104504391	3300013102	Corn Rhizosphere	QQLVADYVRSTYGGEPPSAHLKPEKKSIQLKAVG*
Ga0163162_100340561	3300013306	Switchgrass Rhizosphere	KTVTLKGDHIAEEFERIVFDYVRATYGGEPAAPHLRPEKKWIGIRHA*
Ga0075356_11744561	3300014323	Natural And Restored Wetlands	FQQIVEDYVRTTYGGALRAPHLTPERRTIAIKAQ*
Ga0180084_11141381	3300014874	Soil	EFEEIIVDYVRATYGGEEPAPHLKPDRKTIAVKAAM*
Ga0157379_110201851	3300014968	Switchgrass Rhizosphere	QRMVEDYVRATYGGEARAAHLSPRSKTIAVKAVT*
Ga0157376_112168171	3300014969	Miscanthus Rhizosphere	DDIATEFQRIVDDYVRTTYGGEPRAAHLTPGKKTSGKVVA*
Ga0157376_112501951	3300014969	Miscanthus Rhizosphere	EFQRIVDDYVRATYGGEPAAAHLKPERKTINVKAVV*
Ga0132256_1032636642	3300015372	Arabidopsis Rhizosphere	AQEFQALVHDYVRATYGGETPGPHLKPDRKTIAIKTAAAQVP*
Ga0132257_1016117671	3300015373	Arabidopsis Rhizosphere	AEEFQQIVADYVAATYGGAPRAAHLTPAKKTIAVKAVE*
Ga0132257_1031207031	3300015373	Arabidopsis Rhizosphere	KTVTLKGDAIAEEFQRIVTDYVRTAYGGEPAAPHLWPAKKQIALVRKA*
Ga0182033_109785121	3300016319	Soil	KGDRIAEEFQQIVADYVRATYGGEPPAAHLKPEKKTIGVKAVA
Ga0182032_108743002	3300016357	Soil	VTLKGDNIATEFQRIVDDYVRTTYGGEPRAAHLTPEKKTTAGKAIA
Ga0187786_103645542	3300017944	Tropical Peatland	TLKGERIAEDFTGIVEDYVRATYGGEPRAAHLDPERRTIAVKALA
Ga0187777_112990422	3300017974	Tropical Peatland	EEFQALVDDYVRATYGGEPMSPSLTPAKKTIAVKAIA
Ga0187765_106774482	3300018060	Tropical Peatland	GERIAEEFQAIVEDYVRATYGGEPPAAHLKPERKSLALKVVA
Ga0187773_101142172	3300018064	Tropical Peatland	DNIAAEFQRIVDDYVRATYGGEPRAPHLTPEKKTATGKAIA
Ga0184628_101574361	3300018083	Groundwater Sediment	FQQIVLDYVRATYGGEARAAHLSPRQKTIGVKAVA
Ga0173479_102563871	3300019362	Soil	TVTLKGDHIAEEFERIVFDYVRATYGGEPAAPHLRPEKKWIGIRHA
Ga0210380_101508862	3300021082	Groundwater Sediment	QALVHDYVRATYGGETPGPHLKPDRKTIAIKSAAAQVP
Ga0210402_118393172	3300021478	Soil	AEEFQQIVADYVRATYGGEPATAHLKPTVKTIAVKAVI
Ga0179591_10259513	3300024347	Vadose Zone Soil	MDKRTVTLKGDTIAEDFERIIADYVRATYGGEPPAPHLRPEKKSIAIRSLK
Ga0207680_104534911	3300025903	Switchgrass Rhizosphere	TLKGDAIGEEFLQIVGDYVRATYGGEPPAPHLRPAKKTIAIKNSQ
Ga0207680_111325883	3300025903	Switchgrass Rhizosphere	KGERIAEEFGAIVDDYVRATYGGETPAPHLRPERKSIAVKAV
Ga0207680_113554712	3300025903	Switchgrass Rhizosphere	TVTLKGERIAEEFEQIVFDYVRATYGGEPAAPHLRPEKKWIGIKHI
Ga0207646_107408161	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GIAEAFQEIVADYVRATYGGEPPSAHLKPEKKSIQLKAVG
Ga0207706_115672882	3300025933	Corn Rhizosphere	LKGDGIAEEFQRIVTDYVRTAYGGEPAAPHLRPAKKQIALVRKL
Ga0207670_113474371	3300025936	Switchgrass Rhizosphere	RIAQEFQELVHDYVRATYGGESPGPHLKPDRKTIAIKSATAQVP
Ga0207669_104771291	3300025937	Miscanthus Rhizosphere	ALVHDYVRATYGGETPGPHLKPDRRTIAIKPAAAQVP
Ga0207679_119191301	3300025945	Corn Rhizosphere	VTLKGNSIAEEFEKIVLDYVRATYGGEPAGPHLRPEKKWIGIKQS
Ga0207651_100066541	3300025960	Switchgrass Rhizosphere	KGAGIAEEFQEIVADYVRSTYGGEPPSAHLKPEKKSIQLKAVG
Ga0207639_112362162	3300026041	Corn Rhizosphere	AEEFEALVEAYVRATYGGEPAVPALKPQHKTIAVKAVA
Ga0207702_114186322	3300026078	Corn Rhizosphere	LKGAGIAEAFQEIVADYVRATYGGEPPSAHLKPEKKSIQLKAVG
Ga0209239_10946762	3300026310	Grasslands Soil	TLKGERIAEEFQQIVADYVRATYGGEPATAHLKPAARTNTIAIAVKAII
Ga0209804_12962082	3300026335	Soil	ERIAEEFQQIVADYVRATYGGEPATAHLKPAARTNTIAIAVKAII
Ga0209450_103122411	3300027885	Freshwater Lake Sediment	RIAEEFQRIVEDYVRATYGGEARTSALDPERRTIALKAQA
Ga0209253_107743262	3300027900	Freshwater Lake Sediment	AEEFQRIVDDYVRATYGGLPRTAQLDPERKTIAVKAIA
Ga0268264_121023761	3300028381	Switchgrass Rhizosphere	KGDHIAEEFERIVFDYVRATYGGEPAAPHLRPEKKWIGIRHV
Ga0247823_107535521	3300028590	Soil	AEEFGTIVADYVRATYGGETPAPHLRPERKSIAVKQA
Ga0302160_100850151	3300028665	Fen	FQALVHDYVRATYGGEEPAAHLKPERKTIAVKAVA
Ga0302169_101291842	3300028679	Fen	AEEFQRIVDDYVRATWGGEPRAAHLDPERRSIALKVTG
Ga0302214_10656731	3300028736	Fen	VTLKGDHIAREFQELVHDYVRATYGGEEPAPHLKPDRKTIAVKAVV
Ga0302262_102325562	3300028743	Fen	FQALVHDYVRATYGGEEPAAHLKPERRTIAVKAVA
Ga0302295_11166452	3300028856	Fen	TLKGDRIAEEFQRIVDDYVRATWGGEPRAAHLDPERRSIALKAVG
Ga0311360_108174872	3300030339	Bog	VTLKGDRIAEEFQRIVDDYVRATWGGEPRAAHLDPERRSIALKAVG
Ga0311335_100792501	3300030838	Fen	LKGDHIAQDFQALVHDYVRATYGGEEPAAHLKPERRTIAVKAVA
Ga0307469_115230461	3300031720	Hardwood Forest Soil	GEHIAEEFQQIVADYVRATYGGEPATAHLKPTVKTIAVKAVI
Ga0302321_1004174971	3300031726	Fen	DHIAQEFQALVHDYVRATYGGEEPAAHLKPERKTIAVKAVA
Ga0302321_1031803982	3300031726	Fen	LKGDHIAQEFQALVHDYVRATYGGEEPAAHLKPERRTIAVKAAV
Ga0318543_104729301	3300031777	Soil	TVTLKGARIAEEFQRIVEDYVRAKYGGEPPTPELLPASRTIPMKAVV
Ga0318557_103071992	3300031795	Soil	IATEFQRIVDDYVRTTYGGEPRAAHLTPEKKTTAGKAIA
Ga0307473_114791612	3300031820	Hardwood Forest Soil	KTVTLKGERVAEEFQQIIAAYVRATYGGEPSELPLKGAKKTINIKAVA
Ga0310916_112740232	3300031942	Soil	KGERIAEEFLEIVTDYVRATYGGEPPGPHLKPDRKSLSIKAIA
Ga0310885_103878843	3300031943	Soil	TLKGERIAEEFGTIVADYVRATYGGETPAPHLRPERKSIAVKQA
Ga0310909_102115051	3300031947	Soil	VTLKGARIAEEFQRIVEDYVRAKYGGEPPTPELLPASRTIPMKAVV
Ga0318531_103535242	3300031981	Soil	FLEIVTDYVRATYGGEPPGPHLKPDRKSLSIKAIA
Ga0315278_111384112	3300031997	Sediment	GDGIAVEFQRIVDDYVRATYGGEPRAAHLTPEKKTIAVKAIA
Ga0315278_119038202	3300031997	Sediment	RGDGIAVEFQRIVDDYVRATYGGEPRAAHLTPERKSIPVKALI
Ga0318505_104938581	3300032060	Soil	FQKIVADYVRATYGGEPPAAHLKPEKKTIGVKAVA
Ga0318505_106194411	3300032060	Soil	AEEFQQIVADYVRATYGGEPPAAHLKPEKKTIGVKAVV
Ga0306924_112430672	3300032076	Soil	ERIAEEFLEIVTDYVRATYGGEPPGPHLKPDRKSLSIKAIA
Ga0310895_100872241	3300032122	Soil	KGERIAEEFGAIVADYVRATYGGETPAPHLRPERKSIAVKQV
Ga0315292_106719141	3300032143	Sediment	RGDGIAVEFQRIVDDYVRATYGGEPRAAHLTPERKSIPVKALL
Ga0315287_103914173	3300032397	Sediment	GERIAEEFEQIVLDYVRATYGGEARAAHLSPRPKTIPLKAIA
Ga0315275_109711152	3300032401	Sediment	RIAEDFQRIVEDYVRATYGGEARAAHLSPARKTIAVKAVA
Ga0335085_103783341	3300032770	Soil	EEFQQIVADYVRATYGGEAPAAHLKPEKKSIPLKAAV
Ga0316600_101593002	3300033481	Soil	FQRIVEDYVRATYGGEARTSALDPERRTIAVKRVVA
Ga0316629_110053921	3300033483	Soil	ERIAEEFQQIVDDYVRATYGGEARAAHLSPAQRTIAVKALA
Ga0316626_100339814	3300033485	Soil	IAEEFQQIVDDYVRATYGGEARAAHLTPAQRTIAVKALA
Ga0316621_111996961	3300033488	Soil	LKGERIAEEFQRIVEDYVRATYGGEARTSALDPERRTIALKAHA
Ga0316628_1013327231	3300033513	Soil	ERIAEEFERIVEDYVRATYGGEPRSPALTPQQKTIAVKALA
Ga0364943_0419159_1_132	3300034354	Sediment	RIAQEFQALVHDYVRATYGGETPGPHLKPDRKTIAIKSAAQVP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082638

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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