Metagenome / Metatranscriptome Family F082514

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082514
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	51 residues
Representative Sequence	MNDLFLLEPEFQYHASRARAELKPVRYRKWRRRLEWDGPDAATNEKNWIN
Number of Associated Samples	89
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.99 %
% of genes near scaffold ends (potentially truncated)	26.55 %
% of genes from short scaffolds (< 2000 bps)	85.84 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.637 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (7.965 % of family members)
Environment Ontology (ENVO)	Unclassified (37.168 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.867 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.59% β-sheet: 0.00% Coil/Unstructured: 56.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13191	AAA_16	61.06
PF01979	Amidohydro_1	13.27
PF13147	Obsolete Pfam Family	11.50
PF07969	Amidohydro_3	4.42
PF13671	AAA_33	0.88
PF08007	JmjC_2	0.88
PF02781	G6PD_C	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.88
COG2850	Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain	Translation, ribosomal structure and biogenesis [J]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.64 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.64 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.64 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.87 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	53.98 %
Unclassified	root	N/A	43.36 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	53.98 %
Unclassified	root	N/A	43.36 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	52.21 %
Unclassified	root	N/A	43.36 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	52.21 %
Unclassified	root	N/A	43.36 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	50.44 %
Unclassified	root	N/A	43.36 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.36 %
Nocardioides lijunqiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	11.50 %
Nocardioides cynanchi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	3.54 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	3.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.36 %
Nocardioides lijunqiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	11.50 %
Nocardioides cynanchi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	3.54 %
Nocardioides sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.	2.65 %
Nocardioides sp. URHA0032	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. URHA0032	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_135704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	553	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1889568	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300000956\|JGI10216J12902_115378082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	662	Open in IMG/M
3300001536\|A1565W1_12108191	Not Available	1262	Open in IMG/M
3300001538\|A10PFW1_10041139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.	1510	Open in IMG/M
3300002568\|C688J35102_120207800	Not Available	927	Open in IMG/M
3300002568\|C688J35102_120319441	Not Available	988	Open in IMG/M
3300002568\|C688J35102_120666155	Not Available	1319	Open in IMG/M
3300002568\|C688J35102_120766235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	1521	Open in IMG/M
3300003321\|soilH1_10044917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1185	Open in IMG/M
3300004114\|Ga0062593_100045362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2682	Open in IMG/M
3300004157\|Ga0062590_100620581	Not Available	955	Open in IMG/M
3300004479\|Ga0062595_102447276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300004479\|Ga0062595_102648493	Not Available	504	Open in IMG/M
3300005093\|Ga0062594_100078809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1856	Open in IMG/M
3300005327\|Ga0070658_10778979	Not Available	831	Open in IMG/M
3300005329\|Ga0070683_100014231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	6954	Open in IMG/M
3300005329\|Ga0070683_100202155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1887	Open in IMG/M
3300005329\|Ga0070683_101370623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	680	Open in IMG/M
3300005332\|Ga0066388_100310631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2222	Open in IMG/M
3300005335\|Ga0070666_11152649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	577	Open in IMG/M
3300005365\|Ga0070688_101591994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	533	Open in IMG/M
3300005366\|Ga0070659_101324577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	639	Open in IMG/M
3300005530\|Ga0070679_101017748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	773	Open in IMG/M
3300005535\|Ga0070684_100167220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1997	Open in IMG/M
3300005546\|Ga0070696_101562160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	566	Open in IMG/M
3300005548\|Ga0070665_100000566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	51646	Open in IMG/M
3300005548\|Ga0070665_101244778	Not Available	755	Open in IMG/M
3300005614\|Ga0068856_101350278	Not Available	728	Open in IMG/M
3300005615\|Ga0070702_100374709	Not Available	1010	Open in IMG/M
3300005618\|Ga0068864_101179739	Not Available	764	Open in IMG/M
3300005764\|Ga0066903_100866998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1628	Open in IMG/M
3300005764\|Ga0066903_101303658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1357	Open in IMG/M
3300005834\|Ga0068851_10902175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	554	Open in IMG/M
3300005842\|Ga0068858_101421465	Not Available	683	Open in IMG/M
3300005843\|Ga0068860_100071362	Not Available	3300	Open in IMG/M
3300005843\|Ga0068860_100933450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.	884	Open in IMG/M
3300005900\|Ga0075272_1099907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	557	Open in IMG/M
3300005937\|Ga0081455_10225341	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300006755\|Ga0079222_10417967	Not Available	942	Open in IMG/M
3300006806\|Ga0079220_10911077	Not Available	684	Open in IMG/M
3300006953\|Ga0074063_13621765	Not Available	666	Open in IMG/M
3300006954\|Ga0079219_10841646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	730	Open in IMG/M
3300006954\|Ga0079219_11402128	Not Available	624	Open in IMG/M
3300009093\|Ga0105240_11064021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	862	Open in IMG/M
3300009094\|Ga0111539_13094400	Not Available	537	Open in IMG/M
3300009098\|Ga0105245_10007839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	9352	Open in IMG/M
3300009176\|Ga0105242_10833139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	916	Open in IMG/M
3300009177\|Ga0105248_11028687	Not Available	931	Open in IMG/M
3300009789\|Ga0126307_11141876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.	630	Open in IMG/M
3300009870\|Ga0131092_10021359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	10183	Open in IMG/M
3300010042\|Ga0126314_10789324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	699	Open in IMG/M
3300010044\|Ga0126310_10011177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	4186	Open in IMG/M
3300010358\|Ga0126370_11960543	Not Available	571	Open in IMG/M
3300010373\|Ga0134128_12864565	Not Available	531	Open in IMG/M
3300010870\|Ga0102750_10906366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides cynanchi	532	Open in IMG/M
3300011119\|Ga0105246_11217607	Not Available	694	Open in IMG/M
3300012011\|Ga0120152_1121110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	719	Open in IMG/M
3300012469\|Ga0150984_107490113	Not Available	715	Open in IMG/M
3300012943\|Ga0164241_10001318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	31629	Open in IMG/M
3300012943\|Ga0164241_11157436	Not Available	571	Open in IMG/M
3300012960\|Ga0164301_11890052	Not Available	504	Open in IMG/M
3300012971\|Ga0126369_12841624	Not Available	567	Open in IMG/M
3300012985\|Ga0164308_10770972	Not Available	836	Open in IMG/M
3300013105\|Ga0157369_11194014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	777	Open in IMG/M
3300013296\|Ga0157374_11763859	Not Available	644	Open in IMG/M
3300013297\|Ga0157378_11198477	Not Available	799	Open in IMG/M
3300013306\|Ga0163162_10277077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1809	Open in IMG/M
3300014497\|Ga0182008_10364410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	769	Open in IMG/M
3300014497\|Ga0182008_10402477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	736	Open in IMG/M
3300014969\|Ga0157376_12461060	Not Available	560	Open in IMG/M
3300015371\|Ga0132258_11623928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1631	Open in IMG/M
3300015372\|Ga0132256_101836868	Not Available	714	Open in IMG/M
3300015373\|Ga0132257_102472809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	674	Open in IMG/M
3300015373\|Ga0132257_102731163	Not Available	643	Open in IMG/M
3300015374\|Ga0132255_101588062	Not Available	991	Open in IMG/M
3300020070\|Ga0206356_11763461	Not Available	977	Open in IMG/M
3300020081\|Ga0206354_11039041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	755	Open in IMG/M
3300021384\|Ga0213876_10505981	Not Available	643	Open in IMG/M
3300021445\|Ga0182009_10325214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	780	Open in IMG/M
3300025899\|Ga0207642_10523740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	729	Open in IMG/M
3300025904\|Ga0207647_10050009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2590	Open in IMG/M
3300025904\|Ga0207647_10364821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	817	Open in IMG/M
3300025908\|Ga0207643_10237158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. URHA0032	1120	Open in IMG/M
3300025919\|Ga0207657_11386299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	528	Open in IMG/M
3300025920\|Ga0207649_11350712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	564	Open in IMG/M
3300025921\|Ga0207652_11382006	Not Available	607	Open in IMG/M
3300025934\|Ga0207686_11046527	Not Available	664	Open in IMG/M
3300025934\|Ga0207686_11096621	Not Available	649	Open in IMG/M
3300025940\|Ga0207691_10651653	Not Available	890	Open in IMG/M
3300025941\|Ga0207711_11711138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	572	Open in IMG/M
3300025944\|Ga0207661_10145481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2044	Open in IMG/M
3300025944\|Ga0207661_10264594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1533	Open in IMG/M
3300025945\|Ga0207679_10064201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2743	Open in IMG/M
3300025960\|Ga0207651_10508168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1043	Open in IMG/M
3300025986\|Ga0207658_11094794	Not Available	728	Open in IMG/M
3300026023\|Ga0207677_11891065	Not Available	554	Open in IMG/M
3300026035\|Ga0207703_11004898	Not Available	800	Open in IMG/M
3300028379\|Ga0268266_10000596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	49462	Open in IMG/M
3300028379\|Ga0268266_11527229	Not Available	643	Open in IMG/M
3300028768\|Ga0307280_10185023	Not Available	731	Open in IMG/M
3300031938\|Ga0308175_100084177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2877	Open in IMG/M
3300031938\|Ga0308175_100087805	Not Available	2826	Open in IMG/M
3300031938\|Ga0308175_100171661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	2104	Open in IMG/M
3300031938\|Ga0308175_100935405	Not Available	955	Open in IMG/M
3300031938\|Ga0308175_101526660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides lijunqiniae	746	Open in IMG/M
3300031939\|Ga0308174_10245764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1388	Open in IMG/M
3300031939\|Ga0308174_10325561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1218	Open in IMG/M
3300031996\|Ga0308176_10755572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1013	Open in IMG/M
3300031996\|Ga0308176_10964168	Not Available	898	Open in IMG/M
3300032080\|Ga0326721_10301288	Not Available	894	Open in IMG/M
3300034268\|Ga0372943_0308927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1005	Open in IMG/M
3300034268\|Ga0372943_0910770	Not Available	585	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.75%
Host-Associated	Host-Associated	43.36%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.75%
Plants	Host-Associated → Plants	43.36%
Wastewater	Engineered → Wastewater	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.93%
Roots	Host-Associated → Plants → Roots	0.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.94%
Loam	Environmental → Terrestrial → Soil → Loam	15.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.54%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.89%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005900	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010870	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_02200380	2199352025	Soil	MMNDMFLLEPEFQYHAKRTRAELRPVRYRKWRRRIQWEGPEAATNEKNWIN
ICChiseqgaiiDRAFT_18895682	3300000033	Soil	MNDLFLLEPELQYHVKRTRDELKPVRYRKWRRRLEWDGPDGATNEKNWIN*
JGI10216J12902_1153780821	3300000956	Soil	MNDLFSLEPEYRYKAARARQELRGARYRRWRRRIEWDGPEASTDAKNWIN*
A1565W1_121081913	3300001536	Permafrost	MRTMNDLFMLEPEFHYRATRTRNQLRPVRYRRWRKRLEKGGPAAATNEKNWIN*
A10PFW1_100411393	3300001538	Permafrost	MNDLFMLEPEFHYRATRTRNQLRPVRYRRWRKRLEKGGPAAA
C688J35102_1202078001	3300002568	Soil	MNDFFLLVPEYQYHANRAREELKPVRYRKWRRRLQGDGPGGATNEKNWIN*
C688J35102_1203194411	3300002568	Soil	MNDLYLLEPELKYHTARTRAELKPVRYRKWRRRLEWDGPQGATNEKNWIN*
C688J35102_1206661551	3300002568	Soil	MNDLFLLEPEYRYHAERARHELKPVRYRKWRRRLHGAATNEKNWIN*
C688J35102_1207662351	3300002568	Soil	MMNDMFLLEPEYQYHASRTRAELRPVRYRKWRRRLKWDGAAAATDEKNWIN*
soilH1_100449172	3300003321	Sugarcane Root And Bulk Soil	MNDLFLLEPEYQYRAKRARQALKPVRYRKWRRRLEWDGPAAATDEKNWIN*
Ga0062593_1000453623	3300004114	Soil	MNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0062590_1006205812	3300004157	Soil	MNDLFLLEPELQYHVKRTRAELKPVRYRKWRRRLEWDGPSAATNEKNWIN*
Ga0062595_1024472761	3300004479	Soil	MNDLFTLEPEYRYHAARARLELKNARYRKWRRRLEWDGPDAASDAKNWIN*
Ga0062595_1026484931	3300004479	Soil	GNTEMNDLFLLEPEYRYRAERARQELRPVRYRKWRRRLLGGPGAATNEKNWIN*
Ga0062594_1000788092	3300005093	Soil	MNDLFLLEPEFHYHAKRAREELKPVRYRKWRRRVEWDGPAGATNEKNWIN*
Ga0070658_107789792	3300005327	Corn Rhizosphere	MNDLSMLEPELQYRAARAHEELRPVRYRKWRRRLEHGGPRAATNEKNWIS*
Ga0070683_1000142315	3300005329	Corn Rhizosphere	MSDMFLLKPEFEYHARRTRAALRPTRYRKWRRRLEWDGPDAATDEKNWIN*
Ga0070683_1002021552	3300005329	Corn Rhizosphere	MNDLFLLEPELQYHVKRTRDELKPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0070683_1013706231	3300005329	Corn Rhizosphere	MNDLFTLEPEYRYHAARARLELKNSRYRRWRRRLEWDGPDAATDAKNWIN*
Ga0066388_1003106312	3300005332	Tropical Forest Soil	MNDLFLLEPEFQYHAKRVRSELKPVRYRKWRRRVEWDGPSAATDEKNWIN*
Ga0070666_111526492	3300005335	Switchgrass Rhizosphere	MNDLFLLEPEFQYHASRARAELKPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0070688_1015919942	3300005365	Switchgrass Rhizosphere	MNDLFLLEPEFQYHAKRARAELKPVRYRKWRRRLEWDGPSAATNEKNWIN*
Ga0070659_1013245772	3300005366	Corn Rhizosphere	MQDLFILEPEFQYHAKRARAELKPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0070679_1010177482	3300005530	Corn Rhizosphere	MNDWYLLIPEYDYHAKRARHELKPVRYRKWRRRLEGEGPHAATNEKNWIN*
Ga0070684_1001672202	3300005535	Corn Rhizosphere	MNDLYLLESELKYHTARTRAELKPVRYRKWRRRLEWDGPQGATNEKNWIN*
Ga0070696_1015621601	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VMNDLFLLEPEFQYHASRARAELKPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0070665_10000056620	3300005548	Switchgrass Rhizosphere	MQDLFLLEPEFQYHAKRARAELKPVRYRKWRRRLEWDGPSAATNEKNWIN*
Ga0070665_1012447782	3300005548	Switchgrass Rhizosphere	VSAEHEHEGITAMNDLFLLEPELKYHTSRTRDELKPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0068856_1013502782	3300005614	Corn Rhizosphere	FTLEPEYRYHAARARLELKNSRYRRWRRRLEWDGPDAATDAKNWIN*
Ga0070702_1003747092	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	QPDKNLKGMRTMNDLFLLEPEFHYHAKRAREELKPVRYRKWRRRVEWDGPAGATNEKNWIN*
Ga0068864_1011797392	3300005618	Switchgrass Rhizosphere	MNDLFLLEPEFQYHASRARAELRPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0066903_1008669982	3300005764	Tropical Forest Soil	MNDLFLLEPEFQYHAKRVRGELKPVRYRKWRRRVEWDGPSAATDEKNWIN*
Ga0066903_1013036582	3300005764	Tropical Forest Soil	MNNDFLVSQAEYQYRAERNRRQLQPVRHRKWRKRLEWDGPRAATDVKNWIN*
Ga0068851_109021751	3300005834	Corn Rhizosphere	LLEPEFQYHASRARAELKPVRYRKWRRRLEWDGPSAATNEKNWIN*
Ga0068858_1014214652	3300005842	Switchgrass Rhizosphere	HEGITEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0068860_1000713621	3300005843	Switchgrass Rhizosphere	DLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0068860_1009334502	3300005843	Switchgrass Rhizosphere	MNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0075272_10999072	3300005900	Rice Paddy Soil	MNDLFLLEPEYHYHAERARQELKPVRYRRWRRRMQDGAAGATSEKNWIS*
Ga0081455_102253412	3300005937	Tabebuia Heterophylla Rhizosphere	MNDLFLLEPEFQYHAERARHELKPVRYRKWRRRLHGAATDEKNWIN*
Ga0079222_104179672	3300006755	Agricultural Soil	MNDLFLLEPEFQYHAKRARAELKPVRYRKWRRRLEWHGPDAATDEKNWIN*
Ga0079220_109110771	3300006806	Agricultural Soil	RAMNDLFLLEPEFQYHAKRARAELKPVRYRKWRRRLEWHGPDAATDEKNWIN*
Ga0074063_136217651	3300006953	Soil	MNDLFLLEPEYHYHTERARRQLKAVRYRKWRRRLDFDGPQAVTDEKNWIALDKKN
Ga0079219_108416462	3300006954	Agricultural Soil	MNDLFLLEPEYQYRASRAHEELKPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0079219_114021282	3300006954	Agricultural Soil	MRTMNDLFLLEPEYQYHAERARHELKPVRYRKWRRRLHGAATNEKNWIN*
Ga0105240_110640212	3300009093	Corn Rhizosphere	PALPHGASLYVSARHRHEGITEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0111539_130944001	3300009094	Populus Rhizosphere	MSARHRHEGITEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0105245_100078398	3300009098	Miscanthus Rhizosphere	VSARHRHEGITEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0105242_108331391	3300009176	Miscanthus Rhizosphere	MNDLFLLEPEFQYHASRSRAELRPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0105248_110286871	3300009177	Switchgrass Rhizosphere	RHEGITEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0126307_111418762	3300009789	Serpentine Soil	MSARHRPEGKIVMNNMFLLEPEFQYHAKRARAELRPVRYRKWRRRLKWDGPAAATDEKNWIN*
Ga0131092_100213598	3300009870	Activated Sludge	MRTMNNDLFLLESEYHYHQERTRHALKANRYRRWRRRVEWDGPKAATDAKNWIN*
Ga0126314_107893242	3300010042	Serpentine Soil	MMNNMFLLEPEFQYHAKRTKAELRPVRYRKWRRRLKWDGPSAATDEKNWIN*
Ga0126310_100111772	3300010044	Serpentine Soil	MIAMNNLFLLEPELQYRAERARAQLKPVRHHRKWRRRLKWDGPSAATDEKNWIN*
Ga0126370_119605432	3300010358	Tropical Forest Soil	MNDLFLLEPEYQYRASRAHEELKPVRYRKWRRRLLWDGPDAATNEKNWIN*
Ga0134128_128645652	3300010373	Terrestrial Soil	SARHRHEGITEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0102750_109063661	3300010870	Soil	MNDLFLLEPELKYHTSRTRDELKPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0105246_112176071	3300011119	Miscanthus Rhizosphere	PEGTRVMNDLYLLEPELKYHTARTRAELKPVRYRKWRRRLEWDGPQGATNEKNWIN*
Ga0120152_11211102	3300012011	Permafrost	MNDLFMLEPEFHYRATRTRNQLRPVRYRRWRKRLEKGGPAAATNEKNWIN*
Ga0150984_1074901131	3300012469	Avena Fatua Rhizosphere	MKGMRTMNDLFLLEPEYRYHADRARQELRPVRYRKWRRRLQGSGPSGATDEKNWIN*
Ga0164241_1000131810	3300012943	Soil	MNDLFLLEPELQYHVKRTREELKPVRYRKWRRRLEWDGPDAATNEKNWIN*
Ga0164241_111574362	3300012943	Soil	MNDWYLLVPEYDYHAKRARHELKPVRYRRWRRRLEGDGPRAATNEKNWIN*
Ga0164301_118900521	3300012960	Soil	SELKYHTARTRAELKPARYRKWRRRLEWDGPQGATNEKNWIN*
Ga0126369_128416242	3300012971	Tropical Forest Soil	MKVMNDLFLLEPEYQYHAKRARDELKPVRYRKWRRRLHGGGATDEKNWIN*
Ga0164308_107709721	3300012985	Soil	PKGHIMNDLFSLEPEYRYHADRARLELKGSRYRRWRRRLEWDGPDAATDAKNWIN*
Ga0157369_111940142	3300013105	Corn Rhizosphere	MNDLFLLEPEYHYHAERARQELKPVRYRRWRRRMQNGAAGATSEKNWIS*
Ga0157374_117638591	3300013296	Miscanthus Rhizosphere	RVMNDLYLLEPELKYHTARTRAELKPVRYRKWRRRLEWDGPQGATNEKNWIN*
Ga0157378_111984771	3300013297	Miscanthus Rhizosphere	TEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN*
Ga0163162_102770772	3300013306	Switchgrass Rhizosphere	MRTMNDLFLLEPEFHYHAKRAREELKPVRYRKWRRRVEWDGPAGATNEKNWIN*
Ga0182008_103644102	3300014497	Rhizosphere	MSNMYLLEPEYRYHAERAQAELKPVRYRRWRRRLEGHGPEAATSEKNWIN*
Ga0182008_104024771	3300014497	Rhizosphere	MNDLFLLEPEYRYRANRTRNQLRPVRYRRWRKRLAAGGPGAATDEKNWIS*
Ga0157376_124610602	3300014969	Miscanthus Rhizosphere	MNDLYLLESELKYHTARTRAELKPARYRKWRRRLEWDGPQGATNEKNWIN*
Ga0132258_116239282	3300015371	Arabidopsis Rhizosphere	MRAMNDLFLLEPEYQYHAERARHELKPVRYRKWRRRLHGAATNEKNWIN*
Ga0132256_1018368682	3300015372	Arabidopsis Rhizosphere	MNDLFLLEPEYQYHAERARHELKPVRYRKWRRRLHGAATNEKNWIN*
Ga0132257_1024728092	3300015373	Arabidopsis Rhizosphere	MNDLFTLEPEYRYHAARARLELKTSRYRRWRRRLEWDGADAATDAKNWIN*
Ga0132257_1027311632	3300015373	Arabidopsis Rhizosphere	MNDLFLLKPEYQYHAERARHELKPVRYRKWRRRLHGAATNEKNWIN*
Ga0132255_1015880622	3300015374	Arabidopsis Rhizosphere	HVSQTRTEGMRAMNDLFLLKPEYQYHAERARHELKPVRYRKWRRRLHGAATNEKNWIN*
Ga0206356_117634612	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MQDLFILEPEFQYHAKRARAELKPVRYRKWRRRLEWDGPSAATNEKNWIN
Ga0206354_110390412	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MSDMFLLKPEFEYHAKRTRAALRPTRYRKWRRRLEWDGPDAATDEKNWIN
Ga0213876_105059812	3300021384	Plant Roots	MNDLFLLEPEFQYRASRARSELKPVRYRKWRRRLEWDGPDAATNEKNWIN
Ga0182009_103252142	3300021445	Soil	MNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGATDEKNWIN
Ga0207642_105237402	3300025899	Miscanthus Rhizosphere	MNDLFLLEPEFQYHASRARAELRPVRYRKWRRRLEWDGPDAATNEKNWIN
Ga0207647_100500092	3300025904	Corn Rhizosphere	MNDLSMLEPELQYRAARAHEELRPVRYRKWRRRLEHGGPRAATNEKNWIS
Ga0207647_103648212	3300025904	Corn Rhizosphere	MNDLFLLEPEYHYHAERARQELKPVRYRRWRRRMQNGAAGATSEKNWIS
Ga0207643_102371582	3300025908	Miscanthus Rhizosphere	MNDLYLLESELKYHTARTRAELKPVRYRKWRRRLEWDGPQGATNEKNWIN
Ga0207657_113862992	3300025919	Corn Rhizosphere	EPEFQYHASRARAELRPVRYRKWRRRLEWDGPDAATNEKNWIN
Ga0207649_113507122	3300025920	Corn Rhizosphere	NDLSMLEPELQYRAARAHEELRPVRYRKWRRRLEHGGPRAATNEKNWIS
Ga0207652_113820061	3300025921	Corn Rhizosphere	MNDLFLLEPELQYHVKRTRDELKPVRYRKWRRRLEWDGPDAATNEKNWIN
Ga0207686_110465271	3300025934	Miscanthus Rhizosphere	MNDLFLLEPEFQYHASRSRAELRPVRYRKWRRRLEWDGPDAA
Ga0207686_110966212	3300025934	Miscanthus Rhizosphere	MNDLFLLEPEFHYHAKRAREELKPVRYRKWRRRVEWDGPAGATNEKNWIN
Ga0207691_106516532	3300025940	Miscanthus Rhizosphere	RHRHEGITEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPQGATNEKNWIN
Ga0207711_117111381	3300025941	Switchgrass Rhizosphere	TEMNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPDAATNEKNWIN
Ga0207661_101454812	3300025944	Corn Rhizosphere	MSDMFLLKPEFEYHARRTRAALRPTRYRKWRRRLEWDGPDAATDEKNWIN
Ga0207661_102645942	3300025944	Corn Rhizosphere	MNDLFTLEPEYRYHAARARLELKNSRYRRWRRRLEWDGPDAATDAKNWIN
Ga0207679_100642013	3300025945	Corn Rhizosphere	MNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPDAATNEKNWIN
Ga0207651_105081682	3300025960	Switchgrass Rhizosphere	MNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPQGATNEKNWIN
Ga0207658_110947941	3300025986	Switchgrass Rhizosphere	MNDLFLLEPEFQYRSKRTRSELRPVRYRKWRRRLEWDGPEGA
Ga0207677_118910652	3300026023	Miscanthus Rhizosphere	NRREEAMNDLFTLEPEYKYHAARARLELRTARYRRWRRRLEWDGPAASSDAKNWIN
Ga0207703_110048982	3300026035	Switchgrass Rhizosphere	MNDLFLLEPEFQYHASRARAELKPVRYRKWRRRLEWDGPDAATNEKNWIN
Ga0268266_1000059619	3300028379	Switchgrass Rhizosphere	MQDLFLLEPEFQYHAKRARAELKPVRYRKWRRRLEWDGPSAATNEKNWIN
Ga0268266_115272291	3300028379	Switchgrass Rhizosphere	VSQTRHEGITVMNDLFLLEPEFQYHASRARAELKPVRYRKWRRRLEWDGPDAATNEKNWI
Ga0307280_101850232	3300028768	Soil	MNDLYLLEPELKYHTARTRAELKPVRYRKWRRRLEWDGPQGATNEKNWIN
Ga0308175_1000841773	3300031938	Soil	MYNDLFLLEPEFRYRADRTRGELRPVRYRKWRRRLEWDGPDAATDEKNWIN
Ga0308175_1000878051	3300031938	Soil	MNDLFSLEPEYRYHAARTRLELRNARYRRWRRRLEWDGPDASDVKNWIN
Ga0308175_1001716612	3300031938	Soil	MNDLFLLEPEFHYRANRTRNELRPVRYRRWRKRVADGGPGAATNEKNWIS
Ga0308175_1009354051	3300031938	Soil	MNDLFLLEPELKYHTSRTRDELKPVRYRKWRRRLEWEGPDAATNEKNWIN
Ga0308175_1015266602	3300031938	Soil	MNDLFLLESELKYRTSRTRDELRPARYRRWRRRLEWDGPDAATNEKNWIN
Ga0308174_102457642	3300031939	Soil	MNDLFLLEPEFHYRANRTRNELRPVRYRRWRKRVAEGGPGAATNEKNWIS
Ga0308174_103255612	3300031939	Soil	MNDLFSLEPEYRYHAARARLELRNARYRRWRRRLEWDGPDASDVKNWIN
Ga0308176_107555722	3300031996	Soil	MNDLFLLEPEFHYRANRTRNVLRPVRYRRWRKRLAAGGPAAATDEKNWIN
Ga0308176_109641682	3300031996	Soil	MNDLFLLEPELQYHVKRTRDELKPVRYRKWRRRLEWDGPSAATNEKNWIN
Ga0326721_103012882	3300032080	Soil	MNDLYLLEPELKYHTARTRAELKPVRYRKWRRRLRGAATNEKNWIN
Ga0372943_0308927_366_518	3300034268	Soil	MNDLFLLEPEYHYRATRTRNELRPVRYRRWRKRLAEGGPGAATDEKNWIS
Ga0372943_0910770_229_381	3300034268	Soil	MNDLFMLEPEFHYRANRTRNELRPVRYRRWRKRVADGGPAAATNEKNWIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082514

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences