Metagenome / Metatranscriptome Family F082448

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082448
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	52 residues
Representative Sequence	MTPQIVGSGLICATMLAIGFGFVIPVSSAVSDLCDLLAVGSGMFFVGLLDGA
Number of Associated Samples	85
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.07 %
% of genes near scaffold ends (potentially truncated)	24.78 %
% of genes from short scaffolds (< 2000 bps)	81.42 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.177 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (30.973 % of family members)
Environment Ontology (ENVO)	Unclassified (62.832 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (46.903 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.00% β-sheet: 0.00% Coil/Unstructured: 45.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00487	FA_desaturase	9.73
PF11752	DUF3309	7.96
PF03330	DPBB_1	5.31
PF08448	PAS_4	3.54
PF05532	CsbD	2.65
PF02581	TMP-TENI	0.88
PF03734	YkuD	0.88
PF13495	Phage_int_SAM_4	0.88
PF13185	GAF_2	0.88
PF00723	Glyco_hydro_15	0.88
PF08240	ADH_N	0.88
PF02518	HATPase_c	0.88
PF13632	Glyco_trans_2_3	0.88
PF06698	DUF1192	0.88
PF10049	DUF2283	0.88
PF10091	Glycoamylase	0.88
PF02777	Sod_Fe_C	0.88
PF01566	Nramp	0.88
PF00982	Glyco_transf_20	0.88
PF13701	DDE_Tnp_1_4	0.88
PF08483	Obsolete Pfam Family	0.88
PF05598	DUF772	0.88
PF00571	CBS	0.88
PF13610	DDE_Tnp_IS240	0.88
PF00534	Glycos_transf_1	0.88
PF13561	adh_short_C2	0.88
PF00081	Sod_Fe_N	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	9.73
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	9.73
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	2.65
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	1.77
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	0.88
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.88
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.88
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
All Organisms	root	All Organisms	39.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
cellular organisms	root	All Organisms → cellular organisms	39.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.94 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.51 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.97 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.77 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.65 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.65 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.77 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.88 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.88 %
Halobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.77 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.88 %
Erythrobacter/Porphyrobacter group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group	0.88 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.88 %
Haloarculaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae	0.88 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.65 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.77 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.88 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.88 %
Halorhabdus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halorhabdus	0.88 %
Erythrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter	0.88 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2.65 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.77 %
unclassified Erythrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter	0.88 %
Halorhabdus tiamatea	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halorhabdus → Halorhabdus tiamatea	0.88 %
Methylocystis sp. SC2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	0.88 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.88 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.18 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2.65 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.77 %
Erythrobacter sp. HL-111	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter → Erythrobacter sp. HL-111	0.88 %
Halorhabdus tiamatea	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halorhabdus → Halorhabdus tiamatea	0.88 %
Methylocystis sp. SC2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	0.88 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.88 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918008\|ConsensusfromContig149979	Not Available	1017	Open in IMG/M
3300004082\|Ga0062384_101261700	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halorhabdus → Halorhabdus tiamatea	539	Open in IMG/M
3300004091\|Ga0062387_100799121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	703	Open in IMG/M
3300004152\|Ga0062386_100109091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2133	Open in IMG/M
3300004152\|Ga0062386_101334303	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300006795\|Ga0075520_1250731	Not Available	736	Open in IMG/M
3300006795\|Ga0075520_1277926	Not Available	691	Open in IMG/M
3300009547\|Ga0116136_1080646	Not Available	863	Open in IMG/M
3300009617\|Ga0116123_1195706	Not Available	511	Open in IMG/M
3300009618\|Ga0116127_1036631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1474	Open in IMG/M
3300009631\|Ga0116115_1092900	Not Available	776	Open in IMG/M
3300009633\|Ga0116129_1197563	Not Available	571	Open in IMG/M
3300009639\|Ga0116122_1143284	Not Available	762	Open in IMG/M
3300009641\|Ga0116120_1015517	All Organisms → cellular organisms → Bacteria → Proteobacteria	2883	Open in IMG/M
3300009644\|Ga0116121_1194539	Not Available	644	Open in IMG/M
3300014152\|Ga0181533_1123628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	1103	Open in IMG/M
3300014153\|Ga0181527_1006046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9817	Open in IMG/M
3300014160\|Ga0181517_10673186	Not Available	515	Open in IMG/M
3300014161\|Ga0181529_10020922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5406	Open in IMG/M
3300014165\|Ga0181523_10362000	Not Available	812	Open in IMG/M
3300014199\|Ga0181535_10726570	Not Available	564	Open in IMG/M
3300014200\|Ga0181526_10009614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6750	Open in IMG/M
3300014490\|Ga0182010_10080037	Not Available	1608	Open in IMG/M
3300014491\|Ga0182014_10036865	All Organisms → cellular organisms → Bacteria → Proteobacteria	3619	Open in IMG/M
3300014491\|Ga0182014_10307266	Not Available	812	Open in IMG/M
3300014492\|Ga0182013_10000984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39479	Open in IMG/M
3300014493\|Ga0182016_10000292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	62408	Open in IMG/M
3300014496\|Ga0182011_10563905	Not Available	727	Open in IMG/M
3300014501\|Ga0182024_10044117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	7230	Open in IMG/M
3300014502\|Ga0182021_10557420	Not Available	1370	Open in IMG/M
3300014654\|Ga0181525_10343407	Not Available	817	Open in IMG/M
3300014657\|Ga0181522_10367730	Not Available	858	Open in IMG/M
3300014838\|Ga0182030_10117849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3553	Open in IMG/M
3300017925\|Ga0187856_1026297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2853	Open in IMG/M
3300017925\|Ga0187856_1119313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1025	Open in IMG/M
3300017929\|Ga0187849_1056423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1805	Open in IMG/M
3300017929\|Ga0187849_1072258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1529	Open in IMG/M
3300017935\|Ga0187848_10010117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	5540	Open in IMG/M
3300017935\|Ga0187848_10199455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	861	Open in IMG/M
3300017935\|Ga0187848_10297609	Not Available	674	Open in IMG/M
3300017938\|Ga0187854_10290676	Not Available	700	Open in IMG/M
3300017940\|Ga0187853_10308304	Not Available	714	Open in IMG/M
3300017941\|Ga0187850_10220448	Not Available	861	Open in IMG/M
3300017941\|Ga0187850_10274195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	753	Open in IMG/M
3300017941\|Ga0187850_10439963	Not Available	566	Open in IMG/M
3300017946\|Ga0187879_10356652	Not Available	811	Open in IMG/M
3300017948\|Ga0187847_10012463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5534	Open in IMG/M
3300017948\|Ga0187847_10593039	Not Available	619	Open in IMG/M
3300017955\|Ga0187817_10712905	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300017996\|Ga0187891_1212010	Not Available	657	Open in IMG/M
3300018008\|Ga0187888_1288789	Not Available	632	Open in IMG/M
3300018008\|Ga0187888_1344380	Not Available	567	Open in IMG/M
3300018009\|Ga0187884_10361608	Not Available	584	Open in IMG/M
3300018019\|Ga0187874_10393330	Not Available	559	Open in IMG/M
3300018022\|Ga0187864_10304771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	710	Open in IMG/M
3300018023\|Ga0187889_10209418	Not Available	893	Open in IMG/M
3300018024\|Ga0187881_10151321	Not Available	1011	Open in IMG/M
3300018026\|Ga0187857_10167315	Not Available	1037	Open in IMG/M
3300018030\|Ga0187869_10053067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2134	Open in IMG/M
3300018030\|Ga0187869_10063249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → unclassified Erythrobacter → Erythrobacter sp. HL-111	1924	Open in IMG/M
3300018033\|Ga0187867_10154449	All Organisms → cellular organisms → Bacteria → Proteobacteria	1319	Open in IMG/M
3300018033\|Ga0187867_10358396	Not Available	811	Open in IMG/M
3300018033\|Ga0187867_10506244	Not Available	664	Open in IMG/M
3300018035\|Ga0187875_10155308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1279	Open in IMG/M
3300018038\|Ga0187855_10390636	Not Available	811	Open in IMG/M
3300018038\|Ga0187855_10762528	Not Available	564	Open in IMG/M
3300018042\|Ga0187871_10428171	Not Available	731	Open in IMG/M
3300018042\|Ga0187871_10619532	Not Available	601	Open in IMG/M
3300019082\|Ga0187852_1410704	Not Available	527	Open in IMG/M
3300023090\|Ga0224558_1110149	Not Available	944	Open in IMG/M
3300023091\|Ga0224559_1110580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1009	Open in IMG/M
3300025441\|Ga0208456_1060600	Not Available	699	Open in IMG/M
3300025888\|Ga0209540_10394812	Not Available	757	Open in IMG/M
3300027767\|Ga0209655_10011974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2932	Open in IMG/M
3300027895\|Ga0209624_10521667	Not Available	790	Open in IMG/M
3300028759\|Ga0302224_10412545	Not Available	549	Open in IMG/M
3300028813\|Ga0302157_10234425	Not Available	1033	Open in IMG/M
3300029883\|Ga0311327_10555134	Not Available	696	Open in IMG/M
3300029907\|Ga0311329_10238651	Not Available	1361	Open in IMG/M
3300029907\|Ga0311329_10492162	Not Available	835	Open in IMG/M
3300029915\|Ga0311358_10048518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4912	Open in IMG/M
3300029915\|Ga0311358_10059149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4286	Open in IMG/M
3300029915\|Ga0311358_10416120	Not Available	1080	Open in IMG/M
3300030007\|Ga0311338_10333207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1660	Open in IMG/M
3300030503\|Ga0311370_11483536	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300030805\|Ga0265756_102058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1005	Open in IMG/M
3300031231\|Ga0170824_125576276	Not Available	564	Open in IMG/M
3300031234\|Ga0302325_11823460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300031234\|Ga0302325_12315064	Not Available	649	Open in IMG/M
3300031235\|Ga0265330_10124634	Not Available	1097	Open in IMG/M
3300031235\|Ga0265330_10262769	Not Available	727	Open in IMG/M
3300031236\|Ga0302324_103181337	Not Available	541	Open in IMG/M
3300031247\|Ga0265340_10122761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1194	Open in IMG/M
3300031524\|Ga0302320_10720160	Not Available	1127	Open in IMG/M
3300031524\|Ga0302320_11550501	Not Available	648	Open in IMG/M
3300031525\|Ga0302326_10611295	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300031708\|Ga0310686_104996474	Not Available	881	Open in IMG/M
3300031708\|Ga0310686_105885352	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300031711\|Ga0265314_10630044	Not Available	549	Open in IMG/M
3300032160\|Ga0311301_12483514	Not Available	580	Open in IMG/M
3300032739\|Ga0315741_10587766	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300032756\|Ga0315742_10594392	Not Available	970	Open in IMG/M
3300032756\|Ga0315742_11078553	Not Available	807	Open in IMG/M
3300032756\|Ga0315742_12623916	Not Available	577	Open in IMG/M
3300033402\|Ga0326728_10012025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19468	Open in IMG/M
3300033402\|Ga0326728_10037201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7801	Open in IMG/M
3300033402\|Ga0326728_10046477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	6520	Open in IMG/M
3300033402\|Ga0326728_10249450	Not Available	1693	Open in IMG/M
3300033405\|Ga0326727_10436333	Not Available	1177	Open in IMG/M
3300033827\|Ga0334848_076526	Not Available	595	Open in IMG/M
3300033888\|Ga0334792_125748	Not Available	678	Open in IMG/M
3300033982\|Ga0371487_0288903	Not Available	743	Open in IMG/M
3300034091\|Ga0326724_0058294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2742	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.46%
Host-Associated	Host-Associated	3.54%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	52.21%
Terrestrial	Environmental → Terrestrial	44.25%
Plants	Host-Associated → Plants	3.54%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	52.21%
Peat	Environmental → Terrestrial → Peat	23.89%
Soil	Environmental → Terrestrial → Soil	20.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.54%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	52.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	23.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.54%
Loam	Environmental → Terrestrial → Soil → Loam	0.89%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	43.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	23.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.54%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	30.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	7.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.19%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	6.19%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.42%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.42%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.65%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	2.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032739	Forest Soil Metatranscriptomics Site 2 LB Combined Assembly	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033827	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Bog_all_C_06802920	2140918008	Soil	MIIQLVGSGLICATLLAFGFDFVIPVSSAVSALCDLLAVGSGVVFVGLLDGV
Ga0062384_1012617001	3300004082	Bog Forest Soil	MMTLPIVGSGLISATLLAFGFGFVIPVSGAVGDLCDILAIGSGIFFVGLLDSR*
Ga0062387_1007991213	3300004091	Bog Forest Soil	MALLIVGSGLISAALLALGFGFVVPVSALVGDLCDLLAIGSGIFFVGLLASE*
Ga0062386_1001090913	3300004152	Bog Forest Soil	MSAVASGLVCAAMLAVGLGLVIPVSSIVSASCDFLAVGSGIAFIALLDGK*
Ga0062386_1013343031	3300004152	Bog Forest Soil	MSSVVSGLICATTLAVGLGFVIPVSSIISDLCGLLAVGSGVVFVAMLEGQ*
Ga0075520_12507312	3300006795	Arctic Peat Soil	MIIQLVGSGLICATLLAFGFDFVIPVSSAVSALCDLLAVGSGVVFVGLLDGV*
Ga0075520_12779263	3300006795	Arctic Peat Soil	MTSLIAGSGLICATMLAVGFGFIIPVDSAVSNLCDLLGVGSGMIFVGLL
Ga0116136_10806462	3300009547	Peatland	MTSLIAGSGLICATMLAIGFGFVIPVSSAVSDLCDLLAVGSGMFFVGLLDGA*
Ga0116123_11957062	3300009617	Peatland	MTPQIVGSGLICATSLAVGFGFVIPVGGAVSALCDLLAVGSVIAFFALLDGA*
Ga0116127_10366314	3300009618	Peatland	MTPQIVGSGLICATSLAIGFDFVIPVSSAASDLSDLLAVGSGIFFVGLLDRA*
Ga0116115_10929002	3300009631	Peatland	MTPQIVGSGLICATSLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFLGLLSGE*
Ga0116129_11975633	3300009633	Peatland	MALRIVGSGLISAALLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLASE*
Ga0116122_11432842	3300009639	Peatland	MTPQIVGSGLICATMLAIGFGFVIPVSSAVSDLCDLLAVGSGMFFVGLLDGA*
Ga0116120_10155174	3300009641	Peatland	LIKKSIGEAQEETAMTTRIVGSGLICATLLAVGFGFVIPVGGAVSALCDLLAVGSVIAFFALLDGA*
Ga0116121_11945393	3300009644	Peatland	MILPIVGSGLICLMLLAIGLGLVVPVNYAAGDVCDLLAVGSGMIFVGLLDGE*
Ga0181533_11236283	3300014152	Bog	MTPQIVGSGLICATLLAIGFDVVIPVSSAVGNLCDPLAVGSGMFFVGLLSGE*
Ga0181527_10060462	3300014153	Bog	MSSQIVGSGLICATSLAIGFGFVIAVSSAVSNLCDLLAVGSGMFFVGLLSGE*
Ga0181517_106731862	3300014160	Bog	GLICATLLAVGFGFVIPVGGAVSALCDLLAVGSVIAFFALLDGA*
Ga0181529_100209226	3300014161	Bog	MTIQLVGSGLICVSLLAIGFDFVIPVSSAVSALCDLLAVGSGVAFVGLLDGA*
Ga0181523_103620001	3300014165	Bog	MTWQIVGSGVTCVAMLAVGFDFVIPVSSAIGNLCDLLA
Ga0181535_107265701	3300014199	Bog	MTLPIVGSALLCATMLAIGFDLVIPVSSAVSDLCDFLGVGSGVVLVGLLDGE*
Ga0181526_100096149	3300014200	Bog	MTLPIVGSALPCATMLAIGFDLVIPVSSAVSDLCDFLGVGSGVVLVGLLDGE*
Ga0182010_100800371	3300014490	Fen	MIIQLVGSGLLCLSLLAIGFDFVIPVSSAVSALCDLLAIGSGVAFVGLLDGA*
Ga0182014_100368651	3300014491	Bog	MIIQLVGSGLICATLLAFGFDFVIPVSSAVSALCDLLAVGSGVVFVGLRDGV*
Ga0182014_103072661	3300014491	Bog	MTVQLVGSGLICAALFAIGFDFVIPVSSAVSGLCDLLAVGSGIAFVGLLDGA*
Ga0182013_1000098424	3300014492	Bog	MTIQLVGSGLICVSLLAVGFDFVIPVSSAVSAFCDLLAVGSGVAFVGLLDGA*
Ga0182016_1000029251	3300014493	Bog	MTIQLVGSGLICVSLLAIGFDFVIPVSSAVSAFCDLLAVGSGVAFVGLLDGA*
Ga0182011_105639051	3300014496	Fen	MIIQLVGSGLICATLLAFGFDFVIPVSSAVSALCDLLAVGSGIVFVGLLDGV*
Ga0182024_100441176	3300014501	Permafrost	LIRKTIAEDQGNIMILLIVGSGLTCAAMLAFGFGFVVPVSGAVGDVCDLVAVGSGILFVGLLDSK*
Ga0182021_105574202	3300014502	Fen	MIIQLVGSGLICVSLLAIGFDFVIPVSSAVSALCDLLAIGSGVAFVGLLDGA*
Ga0181525_103434072	3300014654	Bog	MTIQLLGSGLICAALLAIGSDFVIPVSSAVSALCDLLAVGSGVAFVGLLDGA*
Ga0181522_103677302	3300014657	Bog	MTLPIVGSALPCATMLAIGFDLVIPVSSAVSDLCHFPGLGSGVVLVGLLDGG*
Ga0182030_101178494	3300014838	Bog	MTIGLLGSGLTCLSLLAVGFDFVIPVSSAVSALCDLLAVGSGVAFVGLLDGA*
Ga0187856_10262973	3300017925	Peatland	MTSLIAGSGLICATMLAIGFGFVIPVSSAVSDLCDLLAVGSGMFFVGLLDGA
Ga0187856_11193132	3300017925	Peatland	MTPQIVGSGLVCATMLAIGFDFVIPVSGTVSNLCDLLAVGSGMFFVGLISGE
Ga0187849_10564232	3300017929	Peatland	MTPQIVGSGLICATSLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFVGLLSGE
Ga0187849_10722583	3300017929	Peatland	MISPIVGSGLMCATMLAIGFGFVIPVSSAISNLCDLLAVGSGMFLVGLLNGE
Ga0187848_100101175	3300017935	Peatland	MTTRIVGSGLICATLLAVGFGFVIPVGGAVSALCDLLAVGSVIAFFALLDGA
Ga0187848_101994551	3300017935	Peatland	IVGSGLICATMLAVGFGFVVPVSSAVSNLCDLLAVGSGMFFVGLLSDE
Ga0187848_102976093	3300017935	Peatland	MTPQIVGSSLICATMLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFLGLLSGE
Ga0187854_102906762	3300017938	Peatland	MTPQIVGSSLICATMLAIGFGFVIPVSSAISNLCDLLAVGSGMILVGLPSGE
Ga0187853_103083043	3300017940	Peatland	MTPQIVGSGLICATMLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFVGLLSGE
Ga0187850_102204483	3300017941	Peatland	MILPIVGSGLICLTLLAIGLGLVVPINYAAGNVCDLLAVGSGMIFVGLLDGE
Ga0187850_102741952	3300017941	Peatland	MTSHIVGSGLICATMLAIGFGFVVPVSSAVSDLCDLLAVGSGMFFVGLLSGE
Ga0187850_104399632	3300017941	Peatland	MISLIVGSGLICATMLAIGFGFVIPVSSAVSDLCDLLAVGSGMFFVGLLDGA
Ga0187879_103566522	3300017946	Peatland	MISLIVGTGLLCAAMLAIGFGVLIPVSSVVSDLCNLLAVGSGIFFVGLLDGG
Ga0187847_100124632	3300017948	Peatland	MTIQLVGSGLICVSLLAIGFDFVIPVSSAVSALCDLLAVGSGVAFVGLLDGA
Ga0187847_105930392	3300017948	Peatland	MALPIVGSELISTALLAQGFGFVVPVSTVVGDLCDLLAIGSGIFFVGLLASE
Ga0187817_107129052	3300017955	Freshwater Sediment	MSSVVSGLICATTLAVGLGFVIPVSSIISDLCGLLAVGSGVVFVAMLEGQ
Ga0187891_12120102	3300017996	Peatland	MTPQIVGSSLICATMLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFVGLLSGE
Ga0187888_12887891	3300018008	Peatland	MTPQIVGSGLICATMLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFLGLLSGE
Ga0187888_13443801	3300018008	Peatland	MTPQIVGSGLVCATMLAIGFDFVIPVSGTVSNLCDLLAVGSGMFFVGL
Ga0187884_103616081	3300018009	Peatland	MSSQIVGSGLICATSLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFLGLLSGE
Ga0187874_103933302	3300018019	Peatland	MTSQIVGSSLICATMLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFVGLLSGE
Ga0187864_103047712	3300018022	Peatland	VGSGLICATSLAIGFGFVIAVSSAVSNLCDLLAVGSGMFFVGLLSGE
Ga0187889_102094183	3300018023	Peatland	MILPIVGSGLICLMLLAIGLGLVVPVNYAAGDVCDLLAVGSGMIFVGLLDGE
Ga0187881_101513213	3300018024	Peatland	MSSQIVGSGLICATSLAIGFGFVIAVSSAVSNLCDLLAVGSGMFFLGLLSGE
Ga0187857_101673151	3300018026	Peatland	MTSLIAGSGLICATMLAIGFGFVIPVSSAVSDLCDLLAVGSGMFFVGL
Ga0187869_100530673	3300018030	Peatland	MISPIVGSGLVCATMLAIGFGFVIPVSSAISNLCDLLAVGSGMFLVGLLNGE
Ga0187869_100632493	3300018030	Peatland	QIVGSGLICATMLAIGFDFVIPVSSAVSNLCDLLAVGSGMFFLGLLSGE
Ga0187867_101544491	3300018033	Peatland	MISLIVGTGLLCAAMLAVGFGVLIPVSSAVSDLCNLLAVGSGIFFVGLLDGE
Ga0187867_103583961	3300018033	Peatland	MTPQIVGSGLICATLLAIGFGFVIPVNNVVGNVCDLLAVGSGMVFVGLLDGG
Ga0187867_105062441	3300018033	Peatland	MILPIVGSGLICLMLLAIGLGRVVPVNYAAGDVCDLLAVGSGMIFVGLLDGE
Ga0187875_101553082	3300018035	Peatland	MNSHIVGSGLICATMLAVGFGFVVPVSSAVSNLCDLLAVGSGMFFVGLLSDE
Ga0187855_103906362	3300018038	Peatland	MISLIVGTGLLCAAMLAMGFGVLIPVSSAVSDVCNLLAVGSGIFFVGLLDGE
Ga0187855_107625281	3300018038	Peatland	LMAAGSGLTCVTMLAVGFGFVVPVSDGVSDLCDLLAVGSGVYFVGLLDGA
Ga0187871_104281712	3300018042	Peatland	MTLQIVGSGLICATLLAIGFDFVIPVSSAVSNICDFLAVGSGMICVGLLDGE
Ga0187871_106195321	3300018042	Peatland	GLICAALLAIGSDFVIPVSSAVSALCDLLAVGSGVAFVGLLDGA
Ga0187852_14107041	3300019082	Peatland	TAMSSQIVGSGLICATSLAIGFGFVIAVSSAVSNLCDLLAVGSGMFFVGLLSGE
Ga0224558_11101491	3300023090	Soil	MIIQLVGSGLICATLLAFGFDFVIPVSSAVSALCDLLAVGSGVVFVGLRDGV
Ga0224559_11105801	3300023091	Soil	DAHEEAAMIIQLVGSGLLCLSLLAIGFDFVIPVSSAVSALCDLLAIGSGVAFVGLLDGA
Ga0208456_10606003	3300025441	Peatland	MISPIVGSGLMCATMLAIGFGFVIPVSSAISNLCDLLAVGSGMFLVG
Ga0209540_103948121	3300025888	Arctic Peat Soil	MIIHLVGSGLICATLLAFGFDFVIPVSSAVSALCDLLAVGSGIVFVGLLDGV
Ga0209655_100119744	3300027767	Bog Forest Soil	MALLIVGSGLISAALLALGFGFVVPVSALVGDLCDLLAIGSGIFFVGLLASE
Ga0209624_105216673	3300027895	Forest Soil	MALRIVGSGLISAALLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLASE
Ga0302224_104125451	3300028759	Palsa	VTLPIVGSGLISAALLAFGFGFVIPVSGVVGDLCDLMAIGSGVFFVGLLASE
Ga0302157_102344252	3300028813	Bog	MALLIVGSGLISGALLALGFGFVVPVSAVVGDLCDLLAIGSGVFFVGLLASE
Ga0311327_105551341	3300029883	Bog	MTIQLVGSGLICVSLLAIGFDFVIPVSSAVSAFCDLLAVGSGVAFVGLLDGA
Ga0311329_102386511	3300029907	Bog	MALLIVGSGLISGALLALGFGFVVPVSAVVGDLCDLLAIGSGVFFVGLLASEW
Ga0311329_104921621	3300029907	Bog	GSGLICVSLLAVGFDFVIPVSSAVSAFCDLLAVGSGVAFVGLLDGA
Ga0311358_100485181	3300029915	Bog	LVGSGLICVSLLAVGFDFVIPVSSAVSAFCDLLAVGSGVAFVGLLDGA
Ga0311358_100591496	3300029915	Bog	MTIGILGSGLTCLSLLAVGFDFVVPVSSAVSAVCDLLAVGSGVAFLGLLDGA
Ga0311358_104161202	3300029915	Bog	IENEHEKTAMTIQLVGSGLICVSLLAIGFDFVIPVSSAVSALCDLLAVGSGVAFVGLLDG
Ga0311338_103332073	3300030007	Palsa	MALLVVGSGLISAALLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLASE
Ga0311370_114835362	3300030503	Palsa	EGSIMALPIVGSGLISAALLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLASE
Ga0265756_1020583	3300030805	Soil	MALPIVGSGLISAALLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLASQ
Ga0170824_1255762761	3300031231	Forest Soil	MSLVVIGLICATMLAVGLGFVIPVSSIVSNLCDFLAVGSGIAFIALLEGK
Ga0302325_118234601	3300031234	Palsa	ALLIFGSGFISAVLLALGFGFVIPVSTVVGDSCDLLAIGSGIFFVGLLDSG
Ga0302325_123150641	3300031234	Palsa	VTLPIVGSGLISAALLAFGFGFVIPVSGAVGDLCDLLAIGSGIFFVGLL
Ga0265330_101246342	3300031235	Rhizosphere	MITQLVGSGLICVSLLAIGSDFVIPVSSAVSALCDLLAVGSGVAFVGLLDGA
Ga0265330_102627691	3300031235	Rhizosphere	MTIGLLGSGLACLSLLAVGFDFVIPVSSAVSALCELMAVGSGVAFLGLLDGA
Ga0302324_1031813371	3300031236	Palsa	MALPIVGSGLISAALLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLASE
Ga0265340_101227612	3300031247	Rhizosphere	MTTHLIGSGLICVSLLAIGFDFIIPVSGAVSALCDLLAVGSGVAFVGLLDGA
Ga0302320_107201603	3300031524	Bog	MALLIVGSGLISGALLALGFGFVVPVSAVVGDLCDLLAIGSGVFFVGLLASEWRA
Ga0302320_115505011	3300031524	Bog	MTLLIAAGSGLICVTMLAIGFGAFIPVSSAGSDLCNLLAVGSGVYFVGLLDGA
Ga0302326_106112951	3300031525	Palsa	MALRIVGSGLISAALLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLDSE
Ga0310686_1049964742	3300031708	Soil	MSAVASGLICATMLAVGFGFVIPVSSVVSGLCVFLAVGSGIAFISLLEGK
Ga0310686_1058853522	3300031708	Soil	MALLIVGSGLISAALLALGFGFVVPVSTLVGDLCDLLAIGSGIFFVGLLASE
Ga0265314_106300441	3300031711	Rhizosphere	MTIPLVGSGLICLSLFAIGFDFVIPVNSAVSALCELLAVGSGVAFVGLLDGA
Ga0311301_124835141	3300032160	Peatlands Soil	MTKIERGARGGKHVPGGSLICATMLAVGLGFVIPVSSIVSSLCDFLAVGSGIVFIALIDG
Ga0315741_105877662	3300032739	Forest Soil	GGCRGSVMTLLVVGSGLISATLLAFGFGFVIPVSSAVADVCDLLAIGSGIFFVGLLGS
Ga0315742_105943923	3300032756	Forest Soil	MALRIVGSGLISATLLALGFGFVVPVSAVVGDLCDLLAIGSGIFFVGLLDSE
Ga0315742_110785532	3300032756	Forest Soil	VTLPIVGSGLISAALLAFGFGFVIPVSVVVGDLCDLKAIGSGIFFVGLLASE
Ga0315742_126239161	3300032756	Forest Soil	MGVLTLGSGFICALTLAFSFGVVIPVSGAIGSLCDFMAIGSGVFFVALLEDK
Ga0326728_1001202512	3300033402	Peat Soil	MISLIVGSGLICATMLAIGFGFVIPVSSAVSNLCDLLAVGSGMFFVGLLSGE
Ga0326728_100372014	3300033402	Peat Soil	MISPIVGSGLMCATMLAIGFGFVIPVSSGVSNVCDLLAVGSGMFFVGLLSGE
Ga0326728_1004647710	3300033402	Peat Soil	IVGSGLICATSLAIGFGFVIPVSSAVSNLCELLAVGSGMFFVRLLSGE
Ga0326728_102494502	3300033402	Peat Soil	MTSQIVGSGLICATSLAIGFGFVIPVSSAVSNLCELLAVGSGMFFVGLLSGE
Ga0326727_104363332	3300033405	Peat Soil	MTSQIVGSSLICATSLAIGFGFVIPVSSAVSNLCELLAVGSGMFFVRLLSGE
Ga0334848_076526_438_593	3300033827	Soil	IIQLVGSGLLCLSLLAIGFDFVIPVSSAVSALCDLLAIGSGVAFVGLLDGA
Ga0334792_125748_156_314	3300033888	Soil	MTLLIAGSGLICATMIAIGFGFVIPVSSAVSGLCDLLAIGSGIFFVGLLDGA
Ga0371487_0288903_235_393	3300033982	Peat Soil	MTSQIVGSSLICATSLAIGFGFVIPVSSAVSNLCELLAVGSGMFFVGLLSGE
Ga0326724_0058294_1169_1327	3300034091	Peat Soil	MTSQIVGSGLICATSLAIGFGFVIPVSSAVSNLCELLAVGSGMFFVRLLSGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082448

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences