Metagenome Family F082439

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082439
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	49 residues
Representative Sequence	MTCTCTRCNHETALECETANCTCCSNKDHDVNVVKDEQEIEEMKTVKKFE
Number of Associated Samples	72
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.07 %
% of genes near scaffold ends (potentially truncated)	24.78 %
% of genes from short scaffolds (< 2000 bps)	81.42 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.522 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (30.088 % of family members)
Environment Ontology (ENVO)	Unclassified (44.248 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.451 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.49% β-sheet: 0.00% Coil/Unstructured: 70.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00512	HisKA	1.77
PF03685	UPF0147	1.77
PF01243	Putative_PNPOx	1.77
PF01230	HIT	0.88
PF00300	His_Phos_1	0.88
PF07690	MFS_1	0.88
PF08240	ADH_N	0.88
PF12681	Glyoxalase_2	0.88
PF00004	AAA	0.88
PF07998	Peptidase_M54	0.88
PF12874	zf-met	0.88
PF08327	AHSA1	0.88
PF01751	Toprim	0.88
PF03266	NTPase_1	0.88
PF14947	HTH_45	0.88
PF01522	Polysacc_deac_1	0.88
PF00571	CBS	0.88
PF01596	Methyltransf_3	0.88
PF01569	PAP2	0.88
PF00583	Acetyltransf_1	0.88
PF00581	Rhodanese	0.88
PF13847	Methyltransf_31	0.88
PF05368	NmrA	0.88
PF08271	TF_Zn_Ribbon	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1698	Uncharacterized conserved protein, UPF0147 family	Function unknown [S]	1.77
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1618	Nucleoside-triphosphatase THEP1	Nucleotide transport and metabolism [F]	0.88
COG1913	Predicted Zn-dependent protease	General function prediction only [R]	0.88
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.88
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
All Organisms	root	All Organisms	42.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
cellular organisms	root	All Organisms → cellular organisms	42.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	41.59 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	18.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	18.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	15.93 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1.77 %
unclassified Thaumarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	15.93 %
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	1.77 %
Thaumarchaeota archaeon 13_1_40CM_2_39_4	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon 13_1_40CM_2_39_4	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	15.93 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.77 %
Thaumarchaeota archaeon 13_1_40CM_2_39_4	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon 13_1_40CM_2_39_4	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	9.73 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	2.65 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.77 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	0.88 %
Thaumarchaeota archaeon 13_1_40CM_2_39_4	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon 13_1_40CM_2_39_4	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
unclassified Nitrososphaera	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera	3.54 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	3.54 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.77 %
Candidatus Nitrosocosmicus oleophilus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	0.88 %
Candidatus Nitrososphaera gargensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis	0.88 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	0.88 %
unclassified Candidatus Nitrosocosmicus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus	0.88 %
Thaumarchaeota archaeon 13_1_40CM_2_39_4	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon 13_1_40CM_2_39_4	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.52 %
Nitrososphaera sp. AFS	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	3.54 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	3.54 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.77 %
Candidatus Nitrosocosmicus sp. SS	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus sp. SS	0.88 %
Candidatus Nitrosocosmicus oleophilus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	0.88 %
Candidatus Nitrososphaera gargensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis	0.88 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	0.88 %
Thaumarchaeota archaeon 13_1_40CM_2_39_4	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon 13_1_40CM_2_39_4	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1027023	Not Available	903	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1077304	Not Available	504	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10148756	Not Available	564	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1001246	All Organisms → cellular organisms → Archaea	4588	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1058402	Not Available	685	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10122366	Not Available	544	Open in IMG/M
3300001537\|A2065W1_10597452	Not Available	778	Open in IMG/M
3300001538\|A10PFW1_10141874	Not Available	1857	Open in IMG/M
3300001661\|JGI12053J15887_10514375	Not Available	571	Open in IMG/M
3300002908\|JGI25382J43887_10038992	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	2581	Open in IMG/M
3300002908\|JGI25382J43887_10073335	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis	1848	Open in IMG/M
3300005167\|Ga0066672_10014019	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	3991	Open in IMG/M
3300005172\|Ga0066683_10711845	Not Available	594	Open in IMG/M
3300005174\|Ga0066680_10381725	Not Available	896	Open in IMG/M
3300005177\|Ga0066690_10439730	Not Available	884	Open in IMG/M
3300005180\|Ga0066685_11040660	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → unclassified Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus sp. SS	538	Open in IMG/M
3300005181\|Ga0066678_10152480	Not Available	1447	Open in IMG/M
3300005181\|Ga0066678_10397461	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	914	Open in IMG/M
3300005187\|Ga0066675_10117897	All Organisms → cellular organisms → Archaea	1780	Open in IMG/M
3300005187\|Ga0066675_10264800	Not Available	1232	Open in IMG/M
3300005187\|Ga0066675_10350075	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1080	Open in IMG/M
3300005187\|Ga0066675_11215148	Not Available	559	Open in IMG/M
3300005332\|Ga0066388_100226507	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	2501	Open in IMG/M
3300005332\|Ga0066388_108358244	Not Available	516	Open in IMG/M
3300005445\|Ga0070708_101059282	Not Available	760	Open in IMG/M
3300005446\|Ga0066686_10537260	Not Available	794	Open in IMG/M
3300005447\|Ga0066689_10151189	All Organisms → cellular organisms → Archaea	1381	Open in IMG/M
3300005447\|Ga0066689_10181017	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1270	Open in IMG/M
3300005447\|Ga0066689_10399977	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	859	Open in IMG/M
3300005467\|Ga0070706_100837852	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	851	Open in IMG/M
3300005467\|Ga0070706_101760664	Not Available	564	Open in IMG/M
3300005468\|Ga0070707_100040413	All Organisms → cellular organisms → Archaea	4462	Open in IMG/M
3300005468\|Ga0070707_100119761	Not Available	2555	Open in IMG/M
3300005518\|Ga0070699_100833191	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	844	Open in IMG/M
3300005552\|Ga0066701_10139156	Not Available	1454	Open in IMG/M
3300005553\|Ga0066695_10251321	Not Available	1116	Open in IMG/M
3300005556\|Ga0066707_10996656	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	511	Open in IMG/M
3300005557\|Ga0066704_10986722	Not Available	520	Open in IMG/M
3300005559\|Ga0066700_10120175	All Organisms → cellular organisms → Archaea	1747	Open in IMG/M
3300005559\|Ga0066700_11095950	Not Available	521	Open in IMG/M
3300005764\|Ga0066903_104675482	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	729	Open in IMG/M
3300005764\|Ga0066903_105309967	Not Available	681	Open in IMG/M
3300005764\|Ga0066903_108635586	Not Available	518	Open in IMG/M
3300005764\|Ga0066903_108947232	Not Available	507	Open in IMG/M
3300006032\|Ga0066696_10966978	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	542	Open in IMG/M
3300006034\|Ga0066656_10948177	Not Available	552	Open in IMG/M
3300006034\|Ga0066656_10963367	Not Available	547	Open in IMG/M
3300006796\|Ga0066665_10339646	Not Available	1221	Open in IMG/M
3300006796\|Ga0066665_10623530	All Organisms → cellular organisms → Archaea	863	Open in IMG/M
3300006797\|Ga0066659_11347111	Not Available	596	Open in IMG/M
3300006800\|Ga0066660_11162701	Not Available	607	Open in IMG/M
3300006804\|Ga0079221_11141016	Not Available	600	Open in IMG/M
3300006806\|Ga0079220_10042480	Not Available	2095	Open in IMG/M
3300007982\|Ga0102924_1002209	All Organisms → cellular organisms → Archaea	21558	Open in IMG/M
3300009012\|Ga0066710_100580472	All Organisms → cellular organisms → Archaea	1699	Open in IMG/M
3300009012\|Ga0066710_100822094	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300009012\|Ga0066710_100965702	Not Available	1314	Open in IMG/M
3300009012\|Ga0066710_101736789	Not Available	947	Open in IMG/M
3300009012\|Ga0066710_102319676	Not Available	780	Open in IMG/M
3300009090\|Ga0099827_10172377	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon 13_1_40CM_2_39_4	1784	Open in IMG/M
3300009137\|Ga0066709_100057681	All Organisms → cellular organisms → Archaea	4447	Open in IMG/M
3300009137\|Ga0066709_101785045	Not Available	865	Open in IMG/M
3300009137\|Ga0066709_102455514	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	705	Open in IMG/M
3300009400\|Ga0116854_1005915	All Organisms → cellular organisms → Archaea	6458	Open in IMG/M
3300010048\|Ga0126373_12637846	Not Available	560	Open in IMG/M
3300010335\|Ga0134063_10425521	Not Available	655	Open in IMG/M
3300010360\|Ga0126372_10554398	Not Available	1092	Open in IMG/M
3300010361\|Ga0126378_12411167	Not Available	601	Open in IMG/M
3300010366\|Ga0126379_11540264	Not Available	770	Open in IMG/M
3300010373\|Ga0134128_10053783	All Organisms → cellular organisms → Archaea	4649	Open in IMG/M
3300010376\|Ga0126381_100625139	Not Available	1534	Open in IMG/M
3300010376\|Ga0126381_101763164	Not Available	894	Open in IMG/M
3300010376\|Ga0126381_103523745	Not Available	614	Open in IMG/M
3300010376\|Ga0126381_104789017	Not Available	520	Open in IMG/M
3300010396\|Ga0134126_10271174	Not Available	2002	Open in IMG/M
3300012019\|Ga0120139_1141597	Not Available	622	Open in IMG/M
3300012096\|Ga0137389_10337267	All Organisms → cellular organisms → Archaea	1281	Open in IMG/M
3300012201\|Ga0137365_10010120	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	7471	Open in IMG/M
3300012201\|Ga0137365_10011967	All Organisms → cellular organisms → Archaea	6842	Open in IMG/M
3300012201\|Ga0137365_10091364	Not Available	2292	Open in IMG/M
3300012201\|Ga0137365_10729353	All Organisms → cellular organisms → Archaea	724	Open in IMG/M
3300012201\|Ga0137365_10843925	Not Available	669	Open in IMG/M
3300012206\|Ga0137380_10123383	All Organisms → cellular organisms → Archaea	2366	Open in IMG/M
3300012206\|Ga0137380_10406569	Not Available	1208	Open in IMG/M
3300012206\|Ga0137380_11050761	Not Available	695	Open in IMG/M
3300012207\|Ga0137381_11419594	Not Available	586	Open in IMG/M
3300012209\|Ga0137379_11656273	Not Available	537	Open in IMG/M
3300012349\|Ga0137387_10156767	All Organisms → cellular organisms → Archaea	1623	Open in IMG/M
3300012351\|Ga0137386_10304160	All Organisms → cellular organisms → Archaea	1148	Open in IMG/M
3300012356\|Ga0137371_10541184	Not Available	897	Open in IMG/M
3300012357\|Ga0137384_10435244	All Organisms → cellular organisms → Archaea	1081	Open in IMG/M
3300012357\|Ga0137384_10747409	Not Available	793	Open in IMG/M
3300014058\|Ga0120149_1092300	Not Available	803	Open in IMG/M
3300014827\|Ga0120171_1094055	Not Available	770	Open in IMG/M
3300018433\|Ga0066667_10266120	Not Available	1310	Open in IMG/M
3300018433\|Ga0066667_10325504	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1209	Open in IMG/M
3300018468\|Ga0066662_10056072	All Organisms → cellular organisms → Archaea	2545	Open in IMG/M
3300018468\|Ga0066662_10464262	All Organisms → cellular organisms → Archaea	1139	Open in IMG/M
3300019885\|Ga0193747_1000514	All Organisms → cellular organisms → Archaea	12608	Open in IMG/M
3300021560\|Ga0126371_10165899	All Organisms → cellular organisms → Archaea	2282	Open in IMG/M
3300021560\|Ga0126371_12720832	All Organisms → cellular organisms → Archaea	600	Open in IMG/M
3300025910\|Ga0207684_10355494	Not Available	1261	Open in IMG/M
3300025922\|Ga0207646_10026044	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	5345	Open in IMG/M
3300025922\|Ga0207646_10164220	All Organisms → cellular organisms → Archaea	2005	Open in IMG/M
3300025922\|Ga0207646_11213170	Not Available	661	Open in IMG/M
3300026313\|Ga0209761_1080199	All Organisms → cellular organisms → Archaea	1695	Open in IMG/M
3300026328\|Ga0209802_1321843	All Organisms → cellular organisms → Archaea	511	Open in IMG/M
3300026536\|Ga0209058_1239012	Not Available	653	Open in IMG/M
3300026547\|Ga0209156_10146789	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	1144	Open in IMG/M
3300026547\|Ga0209156_10232287	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	866	Open in IMG/M
3300026547\|Ga0209156_10362717	Not Available	620	Open in IMG/M
3300027748\|Ga0209689_1261810	Not Available	696	Open in IMG/M
3300027765\|Ga0209073_10044716	Not Available	1432	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.11%
Aquatic	Environmental → Aquatic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.11%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.07%
Loam	Environmental → Terrestrial → Soil → Loam	15.04%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	43.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.65%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	13.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.77%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10270232	3300000580	Forest Soil	MTCTCSQCNHEAALECETANCSCCSNKDHDVNVIENDQEIEEMETVKKFN*
AF_2010_repII_A01DRAFT_10773041	3300000580	Forest Soil	MTCTCPQCNHETALECETANCSCCSKKDHDVNVIENDQEVEEMETVKKFE*
AF_2010_repII_A1DRAFT_101487561	3300000597	Forest Soil	NHEGTVECETANCRCCSRKDHDVNLVKDENTIEEMMTVKKFE*
AF_2010_repII_A100DRAFT_10012461	3300000655	Forest Soil	CSHCNHEGTVECETANCRCCSRKDHDVNLVKDENTIEEMMTVKKFE*
AF_2010_repII_A100DRAFT_10584021	3300000655	Forest Soil	MVCTCSHCSHEGTVECETANCRCCSIKDHDVNLVKDEQAIEEMTT
AF_2010_repII_A001DRAFT_101223662	3300000793	Forest Soil	SHCSHEGTVECETANCHCCSRKDHDVNLVTDKQTIEEMTAVKKFE*
A2065W1_105974521	3300001537	Permafrost	MACTCIRCNHEAVVECETANCTCCSKKDHDVNVVKNEQEIQEMETVKKFE*
A10PFW1_101418742	3300001538	Permafrost	MVCNCTRCNHEAAVECEAANCTCCSNKDHDINVVKNEQEIQEMETVKKFE*
JGI12053J15887_105143751	3300001661	Forest Soil	MTCTCTRCNHETAXEXDTANCICCSKNXHDVNVVKDEQEIEEMKTVKKFE*
JGI25382J43887_100389921	3300002908	Grasslands Soil	CTRCNHETALECETANCTCCSNKDHDVNVVKDEQEIEEMKTVKKFE*
JGI25382J43887_100733354	3300002908	Grasslands Soil	MVCTCTQCNHEAAVECETANCTCCSNKDHDVNVVKDEQEIEEMKTIKKFE*
Ga0066672_100140196	3300005167	Soil	MACTCTRCNHESALECETANCACCTEKDHDVNVVKDEQEIEEMNTVKKFE*
Ga0066683_107118451	3300005172	Soil	MTCTCNHCTHEAALECDTANCTCCSKKDHDLNVIENDQEIEEMKTVKKFE*
Ga0066680_103817251	3300005174	Soil	MACTCTRCNHKSALECETANCACCTEKDHDVNVVKDEQEIEEMNTVKKFE*
Ga0066690_104397302	3300005177	Soil	MTCTCVRCNHEAALECETANCTCCTEKAHDVNVVKDEQEIE
Ga0066685_110406602	3300005180	Soil	MTCTCNHCTHEAALECDTANCTCCSKKDHDVNVVNDDQEIEQMKTVKKFE*
Ga0066678_101524803	3300005181	Soil	MACTCTRCNHKSALECETANCACCTEKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0066678_103974611	3300005181	Soil	MVCTCTQCNHEAAVECETANCTCCSNKDHDVNVVKDEQEIEEMKT
Ga0066675_101178973	3300005187	Soil	MACTCTQCNHETALECETANCNCCSNKDHDVNVVNDDQEIEQMKTVKKFE*
Ga0066675_102648002	3300005187	Soil	MVCTCTHCNHETALECETGNCICCSKKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0066675_103500752	3300005187	Soil	MVCNCKRCNHETVIECESAHCTCCSQIDHDVNVVKDDQKIQEMETVKKF*
Ga0066675_112151482	3300005187	Soil	MTCTCTRCNHGTALECETANCTCCTEKDHDVNVVKDEQEIEEM
Ga0066388_1002265072	3300005332	Tropical Forest Soil	MTCTCTRCYHETALECETASCTCCSKGDHDINVVKDEQVKKLE*
Ga0066388_1083582441	3300005332	Tropical Forest Soil	MTCACTRCYHETVLECETANCSCCSRSEHDINVVKDEKEIEEMKTVKKFE*
Ga0070708_1010592822	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVCTCTQCNHEAAVECETANCTCCSNKDHDVNVVMDEQEIEEMKTVKKFE*
Ga0066686_105372601	3300005446	Soil	MTCTCNHCTHEAALECDTANCTCCSKKDHDLNVIENDQEIEEMETVKKFE*
Ga0066689_101511892	3300005447	Soil	MACTCTRCNHETALECETANCTCCTEKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0066689_101810171	3300005447	Soil	MVCTCTHCNHEAVLECETANCTCCTAKDHDVNVVKDEQEIE
Ga0066689_103999773	3300005447	Soil	MTCTCVRCNHEAALECETANCTCCTEKAHDVNVVKDEQEIEEMNTVRKFE*
Ga0070706_1008378521	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MACTCTRCNHESALECETANCACCTENDHDVNVVMDEQEIEEMNTVKKFE*
Ga0070706_1017606642	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTCTCVRCNHEAALECETANCTCCTEKAHDVNVVKDEQEIEEMKTVKKFE*
Ga0070707_1000404135	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTCTCTRCNHETTLECETANCTCCSNREHDVNVVKDEQEIEEMKTVKKFE*
Ga0070707_1001197614	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MACTCTRCNHETALECETANCTCCSNKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0070699_1008331913	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TRCNHESALECETANCACCTEKDHDVNVVKDEQEIEEMNTVKKFE*
Ga0066701_101391562	3300005552	Soil	MTCTCTRCNHETALECETANCTCCSNKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0066695_102513211	3300005553	Soil	LACTCTRCNHETALECETANCTCCSNKNHDVNVVKDEQEIEEMKTVKKFE*
Ga0066707_109966561	3300005556	Soil	MTCTCTHCTHEAALECEAANCSCCFKKDHDVNLIENDQEIEEMETVKKFK*
Ga0066704_109867222	3300005557	Soil	MACTCNRCNHETALECETANCICCSKKDHDVNLVKDEQQIEEMKTVKKFE*
Ga0066700_101201752	3300005559	Soil	MTCTCVRCNHEAALECETANCTCCTEKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0066700_110959501	3300005559	Soil	MACTCTRCNHETALECETANCTCCSNRDHDVNVVKDQQEIEEIKTVKKFE*
Ga0066903_1046754822	3300005764	Tropical Forest Soil	MTCTCTRCYHEIALECETASCTCCSKENHDINVIKDEQEIEEMKTVKKFE*
Ga0066903_1053099673	3300005764	Tropical Forest Soil	MTCACTRCYHETVLECETASCNCCSRSDHDINVVKDEKEIE
Ga0066903_1086355861	3300005764	Tropical Forest Soil	MTCVCTRCYHETVLECETASCTCCSKGDHDINVVKDEKEIEEMKT
Ga0066903_1089472322	3300005764	Tropical Forest Soil	MTCVCARCYHETVLECETASCTCCSKGDHDINVVKDEKEIEEMKT
Ga0066696_109669781	3300006032	Soil	MVCNCKRCTHETVIECETAHCTCCSQKEHDVNVVKDDQEIQQME
Ga0066656_109481772	3300006034	Soil	MTCTCTRCNNETALECDTANCNCCSNKDHDVNVVNDDQEIEEMKTVKKFE*
Ga0066656_109633671	3300006034	Soil	MVCNCKGCSHETVIECETAHCTCCSEKDHDVNVVKDDQEIEEMKTVKKF*
Ga0066665_103396462	3300006796	Soil	MVCTCIQCNHETALECETANCICCSKKDHDVNVVKDEQQIEEMKTVKKFE*
Ga0066665_106235302	3300006796	Soil	CNHEAALECETANCTCCTEKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0066659_113471113	3300006797	Soil	MTCTCTRCNHLTTLECETANCTCCTEKDHDFNVVKDVQEIEEMKTVKKSE*
Ga0066660_111627011	3300006800	Soil	MVCNCKRCTHETVIECETAHCTCCSQKEHDVNVVKDDQEIQQMETVKKLQ*
Ga0079221_111410162	3300006804	Agricultural Soil	MVCNCKRCSHETVIECETANCTCCSQIDHDVNVVKDDQEIQ
Ga0079220_100424801	3300006806	Agricultural Soil	MVCNCKRCSHETVIECETANCTCCSQIDHDVNVVKDDQEIQEMETVKKFS*
Ga0102924_100220911	3300007982	Iron-Sulfur Acid Spring	MVCTCTRCNHEATVECETANCTCCSNKNHDVNVVKNEQEIQEMETIKKFE*
Ga0066710_1005804722	3300009012	Grasslands Soil	MACTCTRCNHKSALECETANCACCTEKDHDVNVVKDEQEIEEMNTVKKFE
Ga0066710_1008220943	3300009012	Grasslands Soil	MVCTCIQCNHETALECETANCICCSKKDHDVNVVMDEQEIEEMKTVKKFE
Ga0066710_1009657021	3300009012	Grasslands Soil	MACPCTRCNHETALECETANCTCCTEKDHDVNVVKDEQEIEEMKTVKKFE
Ga0066710_1017367892	3300009012	Grasslands Soil	MVCTCTQCNHETALECETANCICCSKKDHDVNVVKDEQQIEEMKTVKKFE
Ga0066710_1023196762	3300009012	Grasslands Soil	MVCTCTQCNHEAAVECETANCTCCSNKDHDVNVVKDEQEIEEMKTIKKFE
Ga0099827_101723772	3300009090	Vadose Zone Soil	MTCTCTSCNHETALECETANCTCCSNKDHDVNVVKDDQEIEEMKTVKKFE*
Ga0066709_1000576813	3300009137	Grasslands Soil	MTCTCNHCTHEAALECDTANCTCCSKKDHDLNVIDNDQEIEEMETVKKFE*
Ga0066709_1017850451	3300009137	Grasslands Soil	MACPCTRCNHETALECETANCTCSTEKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0066709_1024555141	3300009137	Grasslands Soil	MVCNCKNCSHETVIECETAHCTCCSQKEHDINVVKDDQEIQEMETVKKF*
Ga0116854_10059151	3300009400	Soil	MACTCTRCNHEAVVECETANCTCCSNKDHDVNVVKNEQEIQEMEAIKKFE*
Ga0126373_126378461	3300010048	Tropical Forest Soil	MTCTCTRCYHEIALECETASCTCCSKENHDINVIKDEQEIEEMKTVK
Ga0134063_104255211	3300010335	Grasslands Soil	MACTCTRCNHETALECETANCTCCSNKNHDVNVVKDEQEIEEMKT
Ga0126372_105543981	3300010360	Tropical Forest Soil	MTCVCARCYHETVLECETASCTCCYKGDHDINVVKDEKEIEEMKTVKKFE*
Ga0126378_124111672	3300010361	Tropical Forest Soil	MTCACTRCYHETVLECETASCNCCSRSDHDINVVKDEKEIEEMKTVKKFE*
Ga0126379_115402641	3300010366	Tropical Forest Soil	MTCACTRCYHETVLECETANCSCCSRSEHDINVVKDEKEI
Ga0134128_100537833	3300010373	Terrestrial Soil	MVCNCKQCTHEAVIECETAHCTCCSEREHDVNIVKDDQEIQQMETVKKLQ*
Ga0126381_1006251391	3300010376	Tropical Forest Soil	MTCVCTRCYHETVLECETASCNCCSRSDHDINVVKDEKEIEEMKTVKKFE*
Ga0126381_1017631641	3300010376	Tropical Forest Soil	MTCACTRCYHETVLERETASCSCCTRNDHDINVIKDEKEIEEMTSVKKFE*
Ga0126381_1035237452	3300010376	Tropical Forest Soil	MTCACTRCYHETVLECETANCSCCSRSEHDINVVKDEKEIEEMK
Ga0126381_1047890171	3300010376	Tropical Forest Soil	MTCACTRCYHETVLECETASCSCCSRSDHDINVVKDEKEI
Ga0134126_102711742	3300010396	Terrestrial Soil	MVCNCKRCTHETVIECETAHCTCCSQKEHDVNIVKDDQEIQQMETVKKLQ*
Ga0120139_11415971	3300012019	Permafrost	MVCACTHCNHEAAVECETANCTCCSNKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0137389_103372671	3300012096	Vadose Zone Soil	MVCTCTRCNHEAAVECETANCTCCSNNDHDVNVVMDEQEIEEMKTVKKFE*
Ga0137365_100101202	3300012201	Vadose Zone Soil	MTCTCTRCNHETTLECETANCSCCSKKDHDVNVVKDEQEIEEMKTVRKFE*
Ga0137365_100119674	3300012201	Vadose Zone Soil	MVCTCTQCNHEEAVECETANCTCCSNKDHDVNVVMDEQEKEEMKTVKKFE*
Ga0137365_100913642	3300012201	Vadose Zone Soil	MVCTCTQCNHETALECETANCICCSKKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0137365_107293531	3300012201	Vadose Zone Soil	MDCTCNHCTHEAALECDTANCTCCSKKDHDLNVIENDQEIEEMETVKKFE*
Ga0137365_108439251	3300012201	Vadose Zone Soil	MACTCTRCNHEAALECETANCTCCTEKAHDVNVVKDEH
Ga0137380_101233832	3300012206	Vadose Zone Soil	MTCTCTRCNHGTALECETANCTCCTEKDHDVNVVKDEQEIEEMRTVKKFE*
Ga0137380_104065692	3300012206	Vadose Zone Soil	MACTCTRCNHETALECETASCTCCTEKDHDVNVVKDEQEIEE
Ga0137380_110507611	3300012206	Vadose Zone Soil	MTCTCVRCNHEAALECETANCTCCTEKAHDVNVVKDEHEIEEMKTVKKFE*
Ga0137381_114195942	3300012207	Vadose Zone Soil	MTCTCVRCNHEAALECETANCTCCTEKAHDVNVVKDEHEIEEMKTVRKFG*
Ga0137379_116562731	3300012209	Vadose Zone Soil	MTCTCVRCNHEAALECETANCTCCTEKAHDVNVVKDEEEIEEMKTVKKFE*
Ga0137387_101567672	3300012349	Vadose Zone Soil	MVCTCTQCNHETALECETANCICCSKKDHDVNVVMDEQEIEEMKTVKKFE*
Ga0137386_103041601	3300012351	Vadose Zone Soil	MACTCTRCNHETALECETESCTCCTEKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0137371_105411842	3300012356	Vadose Zone Soil	VCNCKHCNHEAVIECETAHCNCCSQRDHDVNVVKDEQEIQDMESVKKF*
Ga0137384_104352441	3300012357	Vadose Zone Soil	MVCTCTQCNHETALECETGNCICCSKKDHDVNVVKDEQEIEEMKTVKKFE
Ga0137384_107474091	3300012357	Vadose Zone Soil	MTCTCTRCNHETALECETANCTCCTEKAHDVNVVKDEQEIEEMNTVKKFE*
Ga0120149_10923001	3300014058	Permafrost	MVCTCTHCNHEAAVECETANCTCCSNKDHDVNVVKDEQEIEEMKTVKKFE*
Ga0120171_10940551	3300014827	Permafrost	MACTFIRCNHEAVVEGETANCTCCSKKDHDVNVVKNEQEIQEMETVKKFE*
Ga0066667_102661201	3300018433	Grasslands Soil	MACTCTRCNHESALECETANCACCTEKDHDVNVVKDEQEIEEMNTVKKFE
Ga0066667_103255042	3300018433	Grasslands Soil	MTCTCNHCTHEAALECDTANCTCCSKKDHDLNVIDNDQEIEEMETVKKFE
Ga0066662_100560722	3300018468	Grasslands Soil	MACTCTRCNHESALECETANCACCTEKDHDVNVVKDEQEIEEIKTVKKFE
Ga0066662_104642621	3300018468	Grasslands Soil	MVCTCTRCNHETALECETANCTCCSTKDHDVNVVKNEQEIEEMRTVKKFE
Ga0193747_100051413	3300019885	Soil	MTCTCTRCNHLTTLECETANCTCCTEKDHDVNVVKDEQEIEEMKTVKRFE
Ga0126371_101658991	3300021560	Tropical Forest Soil	MTCVCARCYHETVLECETASCTCCSKGDHDINVVKDEKEIEEMKTVKKFE
Ga0126371_127208321	3300021560	Tropical Forest Soil	MTCTCSQCNHEASLECETANCSCCSNKDHDVNVIENDQEIEE
Ga0207684_103554941	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MACTCTRCNHESALECETANCACCTENDHDVNVVMDEQEIEEMNTVKKFE
Ga0207646_100260442	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTCTCTRCNHETTLECETANCTCCSNREHDVNVVKDEQEIEEMKTVKKFE
Ga0207646_101642203	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVCTCTQCNHEAAVECETANCTCCSNKDHDVNVVMDEQEIEEMKTVKKFE
Ga0207646_112131702	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MACTCTRCNHETALECETANCTCCSNKDHDVNVVKDEQEIEEMKTVKKFE
Ga0209761_10801993	3300026313	Grasslands Soil	MVCTCTQCNHEAAVECETANCTCCTEKDHDVNVVKDEQEIEEMKTVKKFE
Ga0209802_13218432	3300026328	Soil	MTCTCTRCNHETALECETANCTCCSNKDHDVNVVKDEQEIEEMKT
Ga0209058_12390121	3300026536	Soil	MACTCTQCNHETALECETANCNCCSNKDHDVNVVNDDQEIEQMKTVKKFE
Ga0209156_101467891	3300026547	Soil	MTCTCTRCNNETALECDTANCNCCSNKDHDVNVVNDDQEIEEMKTVKKFE
Ga0209156_102322871	3300026547	Soil	MTCTCNHCTHEAALECDTANCTCCSKKDHDLNVIENDQEIEEMETVKKFE
Ga0209156_103627171	3300026547	Soil	MVCNCKRCNHETVIECESAHCTCCSQIDHDVNVVKDDQKIQEMETVKKF
Ga0209689_12618101	3300027748	Soil	MACTCTRCNHESALECETANCTCCTEKDHDVNVVKDEQEIEEMKTVKKFE
Ga0209073_100447162	3300027765	Agricultural Soil	MVCNCKRCSHETVIECETANCTCCSQIDHDVNVVKDDQEIQEMETVKKFS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F082439

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences