Metagenome Family F082403

Overview

Basic Information

• Family ID: F082403
• Family Type: Metagenome
• Number of Sequences: 113
• Average Sequence Length: 70 residues
• Representative Sequence: LREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
• Number of Associated Samples: 80
• Number of Associated Scaffolds: 113

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 7.96 %
• % of genes from short scaffolds (< 2000 bps): 1.77 %
• Associated GOLD sequencing projects: 76
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (92.035 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.522 % of family members)
• Environment Ontology (ENVO): Unclassified (60.177 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (63.717 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 65.52%
  β-sheet: 0.00%
  Coil/Unstructured: 34.48%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF07687	M20_dimer	11.50
PF07995	GSDH	7.08
PF01139	RtcB	2.65
PF10091	Glycoamylase	1.77
PF02517	Rce1-like	1.77
PF13520	AA_permease_2	1.77
PF05685	Uma2	0.88
PF13540	RCC1_2	0.88
PF13618	Gluconate_2-dh3	0.88
PF12697	Abhydrolase_6	0.88
PF07883	Cupin_2	0.88
PF01784	NIF3	0.88
PF01323	DSBA	0.88
PF02566	OsmC	0.88
PF08557	Lipid_DES	0.88
PF01569	PAP2	0.88
PF12158	DUF3592	0.88
PF12802	MarR_2	0.88
PF03551	PadR	0.88
PF05368	NmrA	0.88
PF00196	GerE	0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	7.08
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	2.65
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.77
COG0327	Putative GTP cyclohydrolase 1 type 2, NIF3 family	Coenzyme transport and metabolism [H]	0.88
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.88
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.88
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.88
COG3323	PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family	Function unknown [S]	0.88
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.04 %
All Organisms	root	All Organisms	7.96 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.04 %
cellular organisms	root	All Organisms → cellular organisms	7.96 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.96 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.04 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.77 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.04 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.04 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.88 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.88 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.88 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.04 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.88 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.88 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300009089|Ga0099828_10025182	All Organisms → cellular organisms → Bacteria	4715
3300011403|Ga0137313_1003899	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2825
3300011445|Ga0137427_10040253	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1842
3300012349|Ga0137387_10028753	All Organisms → cellular organisms → Bacteria	3564
3300012354|Ga0137366_10023178	All Organisms → cellular organisms → Bacteria	4834
3300012923|Ga0137359_10621821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	946
3300015241|Ga0137418_10010781	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	8405
3300026296|Ga0209235_1038364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2408
3300028536|Ga0137415_10006328	All Organisms → cellular organisms → Bacteria	11736

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.58%
Host-Associated	Host-Associated	4.42%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.38%
Aquatic	Environmental → Aquatic	6.19%
Plants	Host-Associated → Plants	4.42%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.50%
Sediment	Environmental → Aquatic → Sediment	4.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Marine	Environmental → Aquatic → Marine	0.89%
Peat	Environmental → Terrestrial → Peat	0.89%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Loam	Environmental → Terrestrial → Soil → Loam	1.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	72.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.42%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J43887_102865033	3300002908	Grasslands Soil	VTYGPLALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLS
Ga0062590_1024323751	3300004157	Soil	VSHGLPALREDVAAPRQRGVSPGSAAPTGSDRTLLLECRLEQLRGALDEARAEADQARVRLAEAAAREAGETRRLT
Ga0063356_1000108031	3300004463	Arabidopsis Thaliana Rhizosphere	MPTGSDRTLLLECRLEQLRGALDEARAEADQARVRLAAAAAREAGETRRLSLLQDEVARAREEVAALHRRLEHSEALRAK
Ga0062592_1004654063	3300004480	Soil	MTHGPALREGVTAPRRGSLSAGSATPAGSDRTVLLECRLEQLRGALDEARAEADLARVRLAEAAAREVGETQRLSLLQDEVAQAR
Ga0066676_102387852	3300005186	Soil	LREGVTAPLRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETLRLSV
Ga0068995_100238851	3300005206	Natural And Restored Wetlands	VTHGPPALREGITAPPRPTGSDRTLLLECRLEQLRGALDEARAEADQARVRLAAAAAREAGETRRLSLLQDEVARAREEVAALHR
Ga0070700_1011007551	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VGSDRTVLLECRLEQLRAALDEARADADQARIRLAEAAARETGETQRLSALQGELARAREEVAALHRRLEHSEALRAKLQGHLIESEPRED
Ga0070696_1009492811	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VRYGPFALREGVTAPRRSGVSPVSGGAAPTGSDRTLLLECRLEQLRGALEEARAEADQARIRL
Ga0066704_103865341	3300005557	Soil	VTYGPFALREGVTAPRRSGVSPASAPGGSDRTLLLECRLEQLRGALDEARA
Ga0066699_111550201	3300005561	Soil	LREGVTAPRRSTPTGGGSGGSDRTLLLECRLEQLRGALDEARAEADQARIRL
Ga0066659_118067761	3300006797	Soil	LREGITAPRRSTPAGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREASETQR
Ga0079221_102233713	3300006804	Agricultural Soil	LREGVTAPRRSTATEGGSGGSDRTLLLECRLEQLRGALDEARAEADQARVRLAEAAVREAGETRRLSLLQDELARAREEVAALHRRLEHSEALRAKL
Ga0079220_119801851	3300006806	Agricultural Soil	VTHGPLAPREGIIGSDRTFLLECRLDQLRGALDEARAEADQARVRLAEALAREAGETRRLSLLQDELARAREEVAALHRRLEHSEALRAKLQGHLFE
Ga0075426_107992542	3300006903	Populus Rhizosphere	VTHGPFALREGVTAPRRSGVAPGSAPTGGGSGGSDRTLLLECRLEQLRGALDEARAEADQ
Ga0099793_102669111	3300007258	Vadose Zone Soil	LREGVTASRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAA
Ga0099793_104144761	3300007258	Vadose Zone Soil	VKDGPLALREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAE
Ga0099793_104176691	3300007258	Vadose Zone Soil	LREGVTAPRRSPPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALHR
Ga0066710_1027994652	3300009012	Grasslands Soil	VTYGPFALREGVTAPRRSTPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEA
Ga0099830_105386242	3300009088	Vadose Zone Soil	LREGVTAPRRSTPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVA
Ga0099828_100251826	3300009089	Vadose Zone Soil	VTYGPFALREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREA
Ga0099828_108708652	3300009089	Vadose Zone Soil	VTYGPFALREGVTAPRQSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREA
Ga0099827_100644193	3300009090	Vadose Zone Soil	LREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLA
Ga0111538_109354262	3300009156	Populus Rhizosphere	LREGVTAPRRSGVSPVSGGAAPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLA
Ga0111538_120671051	3300009156	Populus Rhizosphere	VGSDRTVLLECRLEQLRGALDEARADADQARVRLAEAASRETGETQRLSALQGELARAREEVAALHRRLEHSEALRAKLQGHLIESEPREDA
Ga0105252_102105381	3300009678	Soil	LPGSAAPTGSDRALLLECRLEELRGALDEARAEADQARVRLAESASREAGETRRLSLLQDEVARARDEVAALHRRLEHSE
Ga0134070_100149323	3300010301	Grasslands Soil	VTYGPFALREGVTAPRRSTPVGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETLRLSVLQDEVARARAEVAALHRRL
Ga0134084_101693622	3300010322	Grasslands Soil	LREGVTAPRRSGVSPGPAPPTSSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREA
Ga0134084_104235972	3300010322	Grasslands Soil	VTYGPFALREGVTAPHRSTATGGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVAAL
Ga0134084_104782522	3300010322	Grasslands Soil	LREGVTAPRPSTAAGSDRTLLLECRLEQLRGALDEARAEADQAR
Ga0134065_101249511	3300010326	Grasslands Soil	VTYGPFALREGVTAPLRSTPTGGGSDRTLLLECRLEQLRGALDEARADADQARIRLAEAAARE
Ga0134111_102572111	3300010329	Grasslands Soil	LREGVTAPRRSTPTAGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVVQDEVARARA
Ga0134111_103369561	3300010329	Grasslands Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAR
Ga0134111_104053552	3300010329	Grasslands Soil	VTYGPFALREGVTAPLRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0134071_103746432	3300010336	Grasslands Soil	LRAGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHS
Ga0134127_117528882	3300010399	Terrestrial Soil	VRYGPFALREGVTAPRRSGVSPVSGEAAPTGVGSDRTVLLECRLEQLRAALDEARADADQ
Ga0137313_10038994	3300011403	Soil	MAVTAGSVVPTGSDRTLLLECRLEQLRGALDEARAEADQARVRLAQAAAREAGETRRMSLLQDEVAR
Ga0137427_100402531	3300011445	Soil	MAVTAGSVVPTGSDRTLLLECRLEQLRGALDEARAEADRARVRLAQAAAREAGETRRMSLLQDEVARAREEVAALHRRLEHSEALR
Ga0137427_103655092	3300011445	Soil	LREGVTAPRSGVGSDRTLLLECRLEQLRGALDEARAEADQARVRLAEAAAREAGETRRMSLLQDEVARAREEVAALHRRLEHSEALR
Ga0137389_101652191	3300012096	Vadose Zone Soil	VTYGPFALREGVTAPRRSAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAE
Ga0137388_110593892	3300012189	Vadose Zone Soil	LREGVTAPRRSGISPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARI
Ga0137364_101843802	3300012198	Vadose Zone Soil	VTHGSFALREGVTAPRRSPPAGSDRTLLLECRLEQLRGALDEARAEADQARLRLAEAAAREAAETLRLSVLQDEVARARA
Ga0137364_105064932	3300012198	Vadose Zone Soil	LREGVTAPRRSGVSPGPAPPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREA
Ga0137383_101229053	3300012199	Vadose Zone Soil	VTYGPFALREGVTAPHRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLA
Ga0137399_101711491	3300012203	Vadose Zone Soil	VTYGPFALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEAL
Ga0137399_108347642	3300012203	Vadose Zone Soil	LLECRLEQLRGALDEARAEADQARVRLAEAAAREAGETRRLSVLQDEVARAREEVAALHRRLEHSEALRAKLQG
Ga0137399_115257651	3300012203	Vadose Zone Soil	MHFTIVTYGPFALREGVTTPRRSTPTGGGSGGSDRTLLLECRLEQL
Ga0137374_101781371	3300012204	Vadose Zone Soil	LREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQARI
Ga0137374_107034452	3300012204	Vadose Zone Soil	LREGVTALRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0137380_110433972	3300012206	Vadose Zone Soil	LREGVTAPRRSTPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0137381_100656831	3300012207	Vadose Zone Soil	VTHGPFALREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADLARIRLAEAAAREAGETLRLSVLQDEVARARAEVAALHRRLEHSEA
Ga0137381_105330132	3300012207	Vadose Zone Soil	LREGVTAPRRSGVSPGPAPPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0137381_107410792	3300012207	Vadose Zone Soil	LREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEA
Ga0137376_101079811	3300012208	Vadose Zone Soil	VTHGPFALREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAE
Ga0137376_101164783	3300012208	Vadose Zone Soil	LREGVTAPRRSGVSPGPVAPTGSDRTLLLECRLEQLRGALDEARAEADQARIRL
Ga0137379_112588302	3300012209	Vadose Zone Soil	LREGVTAPRRSTPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLE
Ga0137378_107184881	3300012210	Vadose Zone Soil	VTYGPFALREGVTAPRRSTPTGGGSGGSDRTLLLECRLEQLRGALDEARAEADQAR
Ga0137370_105027071	3300012285	Vadose Zone Soil	LREGITAPRSGVGSDRTLLLECRLEQLRGALDEARAEADQARVRLAEAAAREAGETRRMSLLQDEVARAREEVAALHRRLEQSEALRAKLQGHLFES
Ga0137370_105340391	3300012285	Vadose Zone Soil	VTHGPFALREGVTAPRRSPPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEA
Ga0137387_100287531	3300012349	Vadose Zone Soil	LREGVTAPRRSTPAGSERTLLLECRLEQLRGALDEARAEADQARVRLAEAAAREAGETQRLSVLQDEVARAR
Ga0137387_110588951	3300012349	Vadose Zone Soil	VTYGPFALREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEA
Ga0137372_100965453	3300012350	Vadose Zone Soil	VTYGPFALREGVTAPHRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAG
Ga0137386_108263132	3300012351	Vadose Zone Soil	LREGVTAPRRSTPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEALRA
Ga0137366_100151716	3300012354	Vadose Zone Soil	LREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0137366_100231781	3300012354	Vadose Zone Soil	VTYGPFALREGVTAPHRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0137369_103859062	3300012355	Vadose Zone Soil	LREGVTAPRRSTPTGGGSGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0137369_107313282	3300012355	Vadose Zone Soil	VTHGPFALREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRL
Ga0137384_111619221	3300012357	Vadose Zone Soil	LREGVTAPRRSGVSPGPAPPTGSDRTLLLECRLEQLRGALDEARAEADQARVRLAEAAAREAGETLRLSVLQDEVARARAEVAALHRRLEHSEALRAKLQ
Ga0137368_103429082	3300012358	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0137375_108643192	3300012360	Vadose Zone Soil	LREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAAL
Ga0137361_105974101	3300012362	Vadose Zone Soil	VTHGPFALREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSV
Ga0137398_100521981	3300012683	Vadose Zone Soil	VTYGPFALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETRRLGALQD
Ga0137397_105116392	3300012685	Vadose Zone Soil	VTYGPFALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLA
Ga0137397_105773582	3300012685	Vadose Zone Soil	LREGVTAPRRSTPASSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREVGET
Ga0137397_111340772	3300012685	Vadose Zone Soil	VTYGPFALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEALRAK
Ga0137396_100880251	3300012918	Vadose Zone Soil	VTHGPFALREGVTAPRRSGVSPTSAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQR
Ga0137396_105101323	3300012918	Vadose Zone Soil	LRQGVTAPRRSPPAGSDRTLLLECRLEQLRGALDEARAEADQA
Ga0137396_108983201	3300012918	Vadose Zone Soil	VSDGPPGFREFTHFIIVKYGPFALREGVTAPRRSPPAGSDRTLLLECRLEQLRGALDEAR
Ga0137394_100503003	3300012922	Vadose Zone Soil	VTYGPFALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREVGETQRLSVLQDEVARARAEV
Ga0137394_107522831	3300012922	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRR
Ga0137394_115027691	3300012922	Vadose Zone Soil	LREGVTAPRRSTPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLGVL
Ga0137359_106218213	3300012923	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEAL
Ga0137419_100269645	3300012925	Vadose Zone Soil	LREGVTAPLRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEA
Ga0137419_100986361	3300012925	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVA
Ga0137419_111553261	3300012925	Vadose Zone Soil	VTHGPFALREGVTAPRRSTPSGSDRTLLLECRLEQLRGAVDEARAEADQARIRLAEAAAREAGETLRLSVLQDE
Ga0137419_112502172	3300012925	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLA
Ga0137416_115009112	3300012927	Vadose Zone Soil	LREGITAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREVGETQRLSVLQDEVARARAEV
Ga0137404_120373402	3300012929	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETRRLSLL
Ga0137410_102691231	3300012944	Vadose Zone Soil	VTHGPFALREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARADADQARIRLAEAAAREAGETQRLSVLQDEVARAR
Ga0137410_104158081	3300012944	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVAALHRRLEHSEALRAK
Ga0137410_109230332	3300012944	Vadose Zone Soil	VTYGPFALREGVTAPLRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRL
Ga0134077_103548842	3300012972	Grasslands Soil	LREGVTAPLRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0134078_105362442	3300014157	Grasslands Soil	VTYGPFALREGVTAPHRSTPTGGGSGGSDRTLLLECRLEQLRGALDEARAEADQARLRLAEAAGREAAETQRLSVLQDEI
Ga0137420_11356033	3300015054	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVASLHRR
Ga0137418_1000544713	3300015241	Vadose Zone Soil	LREGVTAPLRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVLQDEVARARAEVAALH
Ga0137418_100107817	3300015241	Vadose Zone Soil	VTYGPFALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARTRLAEAAAREAGETQRLSVLQDEVARARAEVAALH
Ga0137409_100996801	3300015245	Vadose Zone Soil	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVL
Ga0134089_103611501	3300015358	Grasslands Soil	LREGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEADQA
Ga0134089_104926582	3300015358	Grasslands Soil	LRAGVTAPRRSTPTGSDRTLLLECRLEQLRGALDEARAEAD
Ga0132257_1016146542	3300015373	Arabidopsis Rhizosphere	LREGVTAPHRSGVSPVSAGAAPTAVGSDRTVLLECRLEQLRGALDEARADADQA
Ga0184618_100413402	3300018071	Groundwater Sediment	LREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLA
Ga0137408_13826232	3300019789	Vadose Zone Soil	VTYGPFALREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRVAEAAAREAG
Ga0193723_10537814	3300019879	Soil	VTYGPFALREGVTAPRRNGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRL
Ga0193735_11029682	3300020006	Soil	VTYGPFALREGVTAPRSGVGSDRTFLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETRRVSLLQDEVARAREEVAALHRRLEQSE
Ga0210378_100498922	3300021073	Groundwater Sediment	LREGVTAPRRSGVSPASAAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAG
Ga0209235_10383641	3300026296	Grasslands Soil	VTYGPFALREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIQLA
Ga0209236_10074131	3300026298	Grasslands Soil	VTYGPFALREGVTAPRRSGVSPASAPGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAA
Ga0209468_10149913	3300026306	Soil	VTYGPFALREGVTAPRRSTPAGSDRTLLLECRLEQLRGALDEARADADQARIRL
Ga0209761_10205191	3300026313	Grasslands Soil	LREGVTAPRRSTPTGGGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGET
Ga0209378_10522491	3300026528	Soil	LREGVTAPRRSGVSPASAPGGSDRTLLLECRLEQLRGALDEARAEADQA
Ga0137415_1000632812	3300028536	Vadose Zone Soil	VKHGPFALREGVTAPRRNGVSPGSAAPVGSDRTLLLECRLEQLRGALDEAR
Ga0307293_102541721	3300028711	Soil	LREGVTAPRRSPPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAE
Ga0307473_105054492	3300031820	Hardwood Forest Soil	VTYGLLALREGVTAPRRSGVSPGSPPAGSDRTLLLECRLEQLRGALDEARAEADQARIRLAEAAAREAGETQRLSVIQDEVA
Ga0326723_0476388_304_570	3300034090	Peat Soil	MTHGPALREGVTAPRRGSLSAGSATPAGSDRTVLLECRLEQLRGALDEARAEADLARVRLAEAAAREVGETQRLSLLQDEVAQAREEVA