Metagenome / Metatranscriptome Family F082400

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082400
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	72 residues
Representative Sequence	MKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFPACQICPAGVLYRLESPCVPMAVPVVAELAAAVC
Number of Associated Samples	81
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.61 %
% of genes near scaffold ends (potentially truncated)	15.93 %
% of genes from short scaffolds (< 2000 bps)	64.60 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.230 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (25.664 % of family members)
Environment Ontology (ENVO)	Unclassified (35.398 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.673 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.00% β-sheet: 27.00% Coil/Unstructured: 70.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00011	HSP20	14.16
PF00226	DnaJ	3.54
PF12728	HTH_17	1.77
PF13365	Trypsin_2	1.77
PF13185	GAF_2	1.77
PF05974	DUF892	0.88
PF00085	Thioredoxin	0.88
PF08031	BBE	0.88
PF12852	Cupin_6	0.88
PF13560	HTH_31	0.88
PF00210	Ferritin	0.88
PF02518	HATPase_c	0.88
PF00069	Pkinase	0.88
PF05973	Gp49	0.88
PF04014	MazE_antitoxin	0.88
PF01527	HTH_Tnp_1	0.88
PF01370	Epimerase	0.88
PF00378	ECH_1	0.88
PF04972	BON	0.88
PF13620	CarboxypepD_reg	0.88
PF03481	Sua5_C	0.88
PF03824	NicO	0.88
PF02469	Fasciclin	0.88
PF03576	Peptidase_S58	0.88
PF07228	SpoIIE	0.88
PF13474	SnoaL_3	0.88
PF13432	TPR_16	0.88
PF11066	DUF2867	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	14.16
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.54
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	1.77
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.88
COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	General function prediction only [R]	0.88
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.88
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.88
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.23 %
Unclassified	root	N/A	1.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	81.42 %
Unclassified	root	N/A	1.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.93 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.08 %
Unclassified	root	N/A	1.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.19 %
Unclassified	root	N/A	1.77 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.19 %
Unclassified	root	N/A	1.77 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.93 %
Unclassified	root	N/A	1.77 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.88 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.93 %
Unclassified	root	N/A	1.77 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.88 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.93 %
Unclassified	root	N/A	1.77 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.88 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101992130	All Organisms → cellular organisms → Bacteria → Acidobacteria	1265	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1007778	All Organisms → cellular organisms → Bacteria → Acidobacteria	1820	Open in IMG/M
3300000789\|JGI1027J11758_12954059	All Organisms → cellular organisms → Bacteria → Acidobacteria	1275	Open in IMG/M
3300001867\|JGI12627J18819_10461197	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300004479\|Ga0062595_102620274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	506	Open in IMG/M
3300005167\|Ga0066672_10302480	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300005171\|Ga0066677_10018991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3145	Open in IMG/M
3300005172\|Ga0066683_10201465	All Organisms → cellular organisms → Bacteria → Acidobacteria	1229	Open in IMG/M
3300005174\|Ga0066680_10143291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1491	Open in IMG/M
3300005176\|Ga0066679_10048487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2434	Open in IMG/M
3300005177\|Ga0066690_10450325	All Organisms → cellular organisms → Bacteria → Acidobacteria	871	Open in IMG/M
3300005181\|Ga0066678_10606936	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300005186\|Ga0066676_10371176	All Organisms → cellular organisms → Bacteria → Acidobacteria	960	Open in IMG/M
3300005439\|Ga0070711_100349088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1189	Open in IMG/M
3300005529\|Ga0070741_10003836	All Organisms → cellular organisms → Bacteria → Acidobacteria	36175	Open in IMG/M
3300005529\|Ga0070741_10037628	Not Available	6383	Open in IMG/M
3300005529\|Ga0070741_10054492	All Organisms → cellular organisms → Bacteria	4773	Open in IMG/M
3300005533\|Ga0070734_10316228	All Organisms → cellular organisms → Bacteria → Acidobacteria	892	Open in IMG/M
3300005533\|Ga0070734_10565751	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300005534\|Ga0070735_10300996	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300005537\|Ga0070730_10001162	All Organisms → cellular organisms → Bacteria	25906	Open in IMG/M
3300005537\|Ga0070730_10014132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6420	Open in IMG/M
3300005537\|Ga0070730_10036707	All Organisms → cellular organisms → Bacteria	3645	Open in IMG/M
3300005537\|Ga0070730_10071017	All Organisms → cellular organisms → Bacteria → Acidobacteria	2457	Open in IMG/M
3300005537\|Ga0070730_10297915	All Organisms → cellular organisms → Bacteria → Acidobacteria	1057	Open in IMG/M
3300005541\|Ga0070733_10151411	All Organisms → cellular organisms → Bacteria → Acidobacteria	1505	Open in IMG/M
3300005542\|Ga0070732_10000083	All Organisms → cellular organisms → Bacteria	92120	Open in IMG/M
3300005554\|Ga0066661_10336149	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
3300005614\|Ga0068856_100746966	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300006028\|Ga0070717_10069774	All Organisms → cellular organisms → Bacteria	2927	Open in IMG/M
3300006800\|Ga0066660_10269536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1342	Open in IMG/M
3300006806\|Ga0079220_10792993	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300006871\|Ga0075434_102480540	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300007076\|Ga0075435_101492891	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300007982\|Ga0102924_1016205	All Organisms → cellular organisms → Bacteria	5752	Open in IMG/M
3300007982\|Ga0102924_1048792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2507	Open in IMG/M
3300009545\|Ga0105237_12423636	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300010371\|Ga0134125_11100160	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300010371\|Ga0134125_11405381	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300010400\|Ga0134122_11148082	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300010401\|Ga0134121_10875105	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300012208\|Ga0137376_11420574	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300012212\|Ga0150985_119341636	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300012929\|Ga0137404_10532039	All Organisms → cellular organisms → Bacteria → Acidobacteria	1051	Open in IMG/M
3300013297\|Ga0157378_10328325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1488	Open in IMG/M
3300013297\|Ga0157378_11753441	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300014169\|Ga0181531_10480853	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300014201\|Ga0181537_10499220	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300014201\|Ga0181537_10714366	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300014654\|Ga0181525_10078289	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1842	Open in IMG/M
3300014657\|Ga0181522_10005003	All Organisms → cellular organisms → Bacteria	7218	Open in IMG/M
3300014968\|Ga0157379_12380653	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300015053\|Ga0137405_1049810	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300015264\|Ga0137403_10332275	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300018468\|Ga0066662_10507879	All Organisms → cellular organisms → Bacteria → Acidobacteria	1100	Open in IMG/M
3300018468\|Ga0066662_12680576	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300019258\|Ga0181504_1024148	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300019260\|Ga0181506_1404367	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300019268\|Ga0181514_1447254	All Organisms → cellular organisms → Bacteria → Acidobacteria	931	Open in IMG/M
3300022557\|Ga0212123_10032655	All Organisms → cellular organisms → Bacteria	5286	Open in IMG/M
3300022726\|Ga0242654_10377437	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300025939\|Ga0207665_10307400	All Organisms → cellular organisms → Bacteria → Acidobacteria	1187	Open in IMG/M
3300026309\|Ga0209055_1005127	All Organisms → cellular organisms → Bacteria	7604	Open in IMG/M
3300026309\|Ga0209055_1079301	All Organisms → cellular organisms → Bacteria → Acidobacteria	1358	Open in IMG/M
3300026318\|Ga0209471_1053913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1854	Open in IMG/M
3300026332\|Ga0209803_1049943	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1856	Open in IMG/M
3300026538\|Ga0209056_10212225	All Organisms → cellular organisms → Bacteria → Acidobacteria	1406	Open in IMG/M
3300027371\|Ga0209418_1063502	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300027502\|Ga0209622_1001730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3175	Open in IMG/M
3300027548\|Ga0209523_1027069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1139	Open in IMG/M
3300027576\|Ga0209003_1010470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1385	Open in IMG/M
3300027583\|Ga0209527_1065440	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300027684\|Ga0209626_1002199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4271	Open in IMG/M
3300027748\|Ga0209689_1175006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300027826\|Ga0209060_10540120	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300027842\|Ga0209580_10000002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1016222	Open in IMG/M
3300027857\|Ga0209166_10000731	All Organisms → cellular organisms → Bacteria	32237	Open in IMG/M
3300027857\|Ga0209166_10000738	All Organisms → cellular organisms → Bacteria → Acidobacteria	31917	Open in IMG/M
3300027857\|Ga0209166_10006670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7753	Open in IMG/M
3300027857\|Ga0209166_10010913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5893	Open in IMG/M
3300027867\|Ga0209167_10513155	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300031718\|Ga0307474_10862714	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300032770\|Ga0335085_10002523	All Organisms → cellular organisms → Bacteria → Acidobacteria	33865	Open in IMG/M
3300032770\|Ga0335085_10022795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8886	Open in IMG/M
3300032770\|Ga0335085_10083547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4183	Open in IMG/M
3300032770\|Ga0335085_12572992	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300032782\|Ga0335082_10017516	All Organisms → cellular organisms → Bacteria → Acidobacteria	7749	Open in IMG/M
3300032783\|Ga0335079_11338854	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300032805\|Ga0335078_10006051	All Organisms → cellular organisms → Bacteria	17928	Open in IMG/M
3300032805\|Ga0335078_10213250	All Organisms → cellular organisms → Bacteria	2668	Open in IMG/M
3300032805\|Ga0335078_10352999	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300032828\|Ga0335080_10241271	All Organisms → cellular organisms → Bacteria → Acidobacteria	1977	Open in IMG/M
3300032829\|Ga0335070_10015217	All Organisms → cellular organisms → Bacteria	8942	Open in IMG/M
3300032829\|Ga0335070_10079350	All Organisms → cellular organisms → Bacteria	3498	Open in IMG/M
3300032829\|Ga0335070_10640422	All Organisms → cellular organisms → Bacteria → Acidobacteria	997	Open in IMG/M
3300032829\|Ga0335070_11674121	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300032829\|Ga0335070_11875842	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300032893\|Ga0335069_10027986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7683	Open in IMG/M
3300032893\|Ga0335069_10074552	All Organisms → cellular organisms → Bacteria → Acidobacteria	4355	Open in IMG/M
3300032893\|Ga0335069_10086729	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3985	Open in IMG/M
3300032893\|Ga0335069_10139612	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3013	Open in IMG/M
3300032893\|Ga0335069_10284496	Not Available	1974	Open in IMG/M
3300032893\|Ga0335069_11568533	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300032895\|Ga0335074_10002674	All Organisms → cellular organisms → Bacteria → Acidobacteria	24322	Open in IMG/M
3300032897\|Ga0335071_10017464	All Organisms → cellular organisms → Bacteria → Acidobacteria	7264	Open in IMG/M
3300032897\|Ga0335071_10057033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	3844	Open in IMG/M
3300032898\|Ga0335072_11027650	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300032954\|Ga0335083_10064876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3761	Open in IMG/M
3300033004\|Ga0335084_10889713	All Organisms → cellular organisms → Bacteria → Acidobacteria	901	Open in IMG/M
3300033158\|Ga0335077_12103077	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300033158\|Ga0335077_12241624	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300033402\|Ga0326728_10004982	All Organisms → cellular organisms → Bacteria	38310	Open in IMG/M
3300033405\|Ga0326727_10229079	All Organisms → cellular organisms → Bacteria → Acidobacteria	1965	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.92%
Host-Associated	Host-Associated	7.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.19%
Aquatic	Environmental → Aquatic	9.73%
Plants	Host-Associated → Plants	7.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.42%
Freshwater	Environmental → Aquatic → Freshwater	7.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.31%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.65%
Peat	Environmental → Terrestrial → Peat	1.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.02%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.66%
Loam	Environmental → Terrestrial → Soil → Loam	9.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.31%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	25.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.31%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	25.66%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	17.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.19%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.65%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1019921301	3300000364	Soil	MKAFKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSCFPACKVCASGVSYRLESPCVPMGLMPRIELASAIC*
AP72_2010_repI_A01DRAFT_10077782	3300000579	Forest Soil	MKVLKSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCELCPGGVLYRLESPCVPLAVPGFVELASAVS*
JGI1027J11758_129540592	3300000789	Soil	MKAXKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSCFPACKVCASGVSYRLESPCVPMGLMPRIELASAIC*
JGI12627J18819_104611971	3300001867	Forest Soil	MKVLKSGEKVPXSGIYRVLHSTPHLADQREMYVEGSRLPDCELCPGGVLYRLESPCVPLAVPAVVELASAVS*
Ga0062595_1026202741	3300004479	Soil	MKVLKSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCELCPGGVLYRLESPCVPLAVPAVVELASAAS*
Ga0066672_103024802	3300005167	Soil	MKVFKSGEKVPASGIYRVLHSTPHIADQREMYFEGSRLPDCEVCPGGVLYRLESPCVPMAVPAVVELASAVS*
Ga0066677_100189915	3300005171	Soil	MKALKSGEKVPASGIYRVLHSMPHAAEQREMYFEGSCFPGCQICPTGVLYRLESPCVPITVPAMVGLATTAC*
Ga0066683_102014651	3300005172	Soil	MKALRSGEKVPASGIYRLLHSTPHAAEQREMYFEGSRFPECQICPAGVLYRLESPCVPMAVPVMAELAAAVC*
Ga0066680_101432912	3300005174	Soil	MKVFKSGEKVPASGIYRVLHSTPHIADQRETYFEGSRLPDCEVCPGGVLYRLESPCVPMAVPAVVELASAVS*
Ga0066679_100484872	3300005176	Soil	MKALKSGEKVPASGIYRVLHSMPHAAEQREMYFEGSCFPGCQICPTGVLYRLESPCVPITVPAMVALATTAC*
Ga0066690_104503251	3300005177	Soil	MKALKYGDKVPVSGVYRVSHMLPHPGEQRELYFEGSHFPACKVCAGGVFYRLESPYVPMAAPVVAQLTTAVC*
Ga0066678_106069361	3300005181	Soil	MKALKYGDKVPVSGVYRVSHMLPHPGEQRELYFEGSHFPACKVCAGGVFYRLESPYVPMAAPVVA
Ga0066676_103711761	3300005186	Soil	MKALKSGEKVPASGIYRLLHSTPHAAEQREMYFEGSRFPECQICPAGVLYRLESPCVPMAVPVMAELAAAVC*
Ga0070711_1003490883	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKALKSGEKVPASGIYRVLHSTPHATEQREMYFEGSRFPECQICPGGVLYRLVSPCVPMAIPAAMTELAMTAC*
Ga0070741_1000383648	3300005529	Surface Soil	MKVLKSGEKVPASGIYRVLHSLPHAGEQRELYFEGSSFPECQICPAGVLYRLESPCVPMAVPATAELAIAAC*
Ga0070741_100376283	3300005529	Surface Soil	MKALKAGEKVPASGIYRISHLLPHTGEQREMYFEGSRFPECNICAAGVYYRLESPCVPMTAAPKIEFAGSVC*
Ga0070741_100544921	3300005529	Surface Soil	MKAFKSGEQVPASGTYLTLHLTPHRIPERELYFEGSRFPECKVCPAGVLYKLESPCVPIAMPAVAEIAATAC*
Ga0070734_103162282	3300005533	Surface Soil	MKALRCGDKVPASGIYRVSHLLPHPAEQREMYFEGSCFPPCKICAAGVYYRLESPFVPMPVVPRIDLASQLC*
Ga0070734_105657512	3300005533	Surface Soil	MKAFKCGEKVPVSGIYRVLHLLPHDADQRELYFEGSRFPTCKVCAAGVHYRLESPYVPIAVPAVVKLAGAVC*
Ga0070735_103009961	3300005534	Surface Soil	MKALKCGDKVPVSGVYRVSHLRPHAPEQREMYFEGSSFPACKVCATGVYYRLESPCVPMTMVPRIDLVRAVC*
Ga0070730_100011624	3300005537	Surface Soil	MKALKCGDKVPVSGVYRVSHLLPHAPEQREMYFEGSCFPACKVCAAGVDYWLESPCVPMTMVPRIDLARAVC*
Ga0070730_100141327	3300005537	Surface Soil	MKALKSGEKVPASGTYRVLHSVPHVTEQRELYFEGSRFPECQICPAGVLYRLESPCVPMGVPAMPELARAAC*
Ga0070730_100367075	3300005537	Surface Soil	MKVLKSGEKVPASGIYRVMHSTPHILEQREMYVEGSRLPNCEVCPGGVLYRLESPCVPRPVPVTIELASAVC*
Ga0070730_100710171	3300005537	Surface Soil	MKAFMCGEKVPVSGIYRVLHLLPHNADQRELYFEGSRFPTCKVCAAGVHYQLESPYVPMAVPAVVELASAVC*
Ga0070730_102979152	3300005537	Surface Soil	MKVLKSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCELCPGGVLYRLESPCVPLAVPAVVELASAVS*
Ga0070733_101514112	3300005541	Surface Soil	MKVLKSGEKVRASGIYRVLHSTPHLAGQREMYFEGSRLPDCELCPGGVLYRLESPCVPLAVPAVIELASAVS*
Ga0070732_1000008383	3300005542	Surface Soil	MKAFKSGEQVPASGTYLTLHLTPHRIPERELYFEGSRFPECKVCPAGVLYKLESPCVPIAMPAVTEIAATAC*
Ga0066661_103361493	3300005554	Soil	MKALKSGEKVPASGIYRVLHSMPHAAEQREMYFEGSCFPGCQICPTGVLYRLESPCVPITVPAMVGLATAC*
Ga0068856_1007469661	3300005614	Corn Rhizosphere	MKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFPACQICPAGVLYRLESPCVPMAVPVVAELAAAVC*
Ga0070717_100697747	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLRSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCELCPGGVLYRLQSPCVPLAVPAVVELASAVS*
Ga0066660_102695361	3300006800	Soil	MKALKSGEKVPASGIYRVLHSMPHAAEQREMYFEGSCFPGCQICPTGVLYRLESPCVPITVPAMV
Ga0079220_107929932	3300006806	Agricultural Soil	MKAFKCGEKVPVSGIYRVLHLLRHNADQRELYFEGSRFPTCKVCTAGVHYRLESPYVPMAFPALVELARAVC*
Ga0075434_1024805401	3300006871	Populus Rhizosphere	RLLNLEVRVMKALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSCFPACKVCASGVFYRLESPCVPMGLMPRIELASAIC*
Ga0075435_1014928911	3300007076	Populus Rhizosphere	MEALKCGDKVPASGVYRVSHLLPHTAAQREMYFEGSCFPACKVCASGVFYRLESPCVPMRLMPRIELASAIC*
Ga0102924_10162052	3300007982	Iron-Sulfur Acid Spring	MKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFPECQICGAGALYRLESPCVPMAVPVVAELAAAVC*
Ga0102924_10487926	3300007982	Iron-Sulfur Acid Spring	MKVLKSGDKVPASGIYRALHPTPHIAEQREMYFEGSRLPNCEVCPSGVLYRLESPCVPIAVPAVFELATAVS*
Ga0105237_124236361	3300009545	Corn Rhizosphere	MKAFKCGEKVPVSGIYRVLHLQPHNADQRELYFEGSRFPTCKVCAAGVHYRLESPYVPMAVPSVLELASTVC*
Ga0134125_111001602	3300010371	Terrestrial Soil	SWFVKRSFSTGGQDMKALKSGEKVPTSGIYRVLHSTPHAVEQREMYFEGSRFPECKTCPAGALFRLESPCVPMGVPMLAQLSSAVC*
Ga0134125_114053811	3300010371	Terrestrial Soil	MKVLKAGEKVPASGIYRVLHVASHSPEHRELYFEGGRFPECSTCLAGVAYRMESPCVPMAAPIPARLETAVC*
Ga0134122_111480821	3300010400	Terrestrial Soil	MKAFKCGEKVPVSGIYRVLHLQPHNADQRELYFEGSRFPTCEVCAAGVHYRLESPYVPMAFPALVELARAGC*
Ga0134121_108751051	3300010401	Terrestrial Soil	VRRVQIGGRSMKVLKSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCELCPGGVLYRLESPCVPLAVPAVLELASAVS*
Ga0137376_114205741	3300012208	Vadose Zone Soil	MKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFPECQICQAGVLYRLDSPCVPMAVPVMAELAAAVC*
Ga0150985_1193416361	3300012212	Avena Fatua Rhizosphere	MKGLKSGEKVPASGIYRVLHSLPHAAEQRELYFEGSRFPECEICPAGVHYRLESPCVPLAVPVMAELAAAVC*
Ga0137404_105320391	3300012929	Vadose Zone Soil	WRSQVMKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFHECQICQAGVLYRLDSPCVPMAVPVMAELAAAVC*
Ga0157378_103283251	3300013297	Miscanthus Rhizosphere	DGDMKAFKCGEKVPVSGIYRVLHLQPHNADQRELYFEGSRFPTCKVCAAGVHYRLESPYVPMAFPALVELARAVC*
Ga0157378_117534411	3300013297	Miscanthus Rhizosphere	MKALKSGEKVPISGIYRILHSTPHAVEDREMYLEGSRFPECQICLVGALYRLESPCVPTGVPMGAELSSAFC*
Ga0181531_104808532	3300014169	Bog	MKAFKCGEKVPVSGIYRVLHLLPHNADQREMYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELARAVS*
Ga0181537_104992201	3300014201	Bog	MKAFKCGEKVPVSGIYRVLHLLPHNADKREMYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELASAVC*
Ga0181537_107143661	3300014201	Bog	MKAFKCGEKVPVSGTYRVLHLLPHNADQRELYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELARAVS*
Ga0181525_100782892	3300014654	Bog	PVSGIYRVLHLLPHNADQREMYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELARAVS*
Ga0181522_100050034	3300014657	Bog	MKAFKCGEKVPVSGIYRVLHLLPHNADQREMYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELASAVC*
Ga0157379_123806531	3300014968	Switchgrass Rhizosphere	MKVLKSGEKVPASGIYRVLHSTPHLVDQREMYFEGSRLPDCDLCPGGVLYRLESPCVPLAVPAVVELASAVS*
Ga0137405_10498101	3300015053	Vadose Zone Soil	MKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFHECQICQAGVLYRLDSPCVPMAVPVMAELAAAVQPPSANEART*
Ga0137403_103322751	3300015264	Vadose Zone Soil	MKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFHECQICQAGVLYRLDSPCVPMAVPVMAELAAAVC*
Ga0066662_105078791	3300018468	Grasslands Soil	MKALKSGEKVPASGIYRVLHSMPHAAEQREMYFEGSCFPGCQICPTGVLYRLESPCVPITVPAMVGLATTAC
Ga0066662_126805761	3300018468	Grasslands Soil	MKSLTCGDKVPASGIYRVWHSLPHLGEQREMYFEGSRLPVCDICAAGVYYRLESPSVAMATSTML
Ga0181504_10241481	3300019258	Peatland	MKAFKCGEKVPVSGIYRVLHLLPHNADQREMYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELARAVS
Ga0181506_14043671	3300019260	Peatland	MKAFKCGEKVPVSGIYRVLHLLPHNADQREMYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELASAVC
Ga0181514_14472541	3300019268	Peatland	MKAFKCGEKVPVSGTYRVLHLLPHNADQRELYFEGSRFPICKVCAAGVHYRLESPYVPMAVPAVVELARAVS
Ga0212123_100326558	3300022557	Iron-Sulfur Acid Spring	MKALKSGEKVPASGIYRVLHSTPHAAEQREMYFEGSRFPECQICGAGALYRLESPCVPMAVPVVAELAAAVC
Ga0242654_103774371	3300022726	Soil	MKALKYGDKVPVSGVYRVSHMLPHPGEQRELYFEGSHFPACKICAGGVFYRLESPYVPMAAPMVAQLTTAVC
Ga0207665_103074002	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKAFKCGEKVPVSGIYRVLHLLPHSADQREMYFEGSRFPTCKVCAAGVRYRLDSPCVPMAVPAVIELARAVR
Ga0209055_10051273	3300026309	Soil	MKALKSGEKVPASGIYRVLHSMPHAAEQREMYFEGSCFPGCQICPTGVLYRLESPCVPITVPAMVGLATAC
Ga0209055_10793012	3300026309	Soil	MKVFKSGEKVPASGIYRVLHSTPHIADQREMYFEGSRLPDCEVCPGGVLYRLESPCVPMAVPAVVELASAVS
Ga0209471_10539131	3300026318	Soil	MKALKSGEKVPASGIYRVLHSMPHAAEQREMYFEGSCFPGCQICPTGVLYRLESPCVPITVPAMVALATTAC
Ga0209803_10499431	3300026332	Soil	YRVLHSTPHIADQREMYFEGSRLPDCEVCPGGVLYRLESPCVPMAVPAVVELASAVS
Ga0209056_102122252	3300026538	Soil	MKALRSGEKVPASGIYRLLHSTPHAAEQREMYFEGSRFPECQICPAGVLYRLESPCVPMAVPVMAELAAAVC
Ga0209418_10635021	3300027371	Forest Soil	MEALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSCFPACKVCASGVFYRLESPCVPMRLMPRIELASAIC
Ga0209622_10017305	3300027502	Forest Soil	MKVLKSGEKVRASGIYRVLHSTPHLADQREMYVEGSRLPDCELCPGGVLYRLESPCVPLAVPAVVELASAVS
Ga0209523_10270691	3300027548	Forest Soil	MKVLKSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCELCPGGVLYRLESPCVPLAVPAVVELASAVS
Ga0209003_10104701	3300027576	Forest Soil	MKALKSGEKVPASGTYRVLHSVPHATEQRELYFEGSRFPECQICVAGVLYRLESPCVPMGVPVMTESAMAAC
Ga0209527_10654401	3300027583	Forest Soil	MKVLKSGEKAPASGIYRVLHSTPHLADQREMYFEGSRLLDCELCPGGVLYRLESPCVPLAVPAVVELASAVS
Ga0209626_10021996	3300027684	Forest Soil	MKVLKSGEKAPASGIYRVLHSTPHLADQREMYFEGSRLPVCELCPSGVLYRLESPCVPLAVPAVVELASAVS
Ga0209689_11750061	3300027748	Soil	GGSSMKVFKSGEKVPASGIYRVLHSTPHIADQREMYFEGSRLPDCEVCPGGVLYRLESPCVPMAVPAVVELASAVS
Ga0209060_105401202	3300027826	Surface Soil	MKAFKCGEKVPVSGIYRVLHLLPHDADQRELYFEGSRFPTCKVCAAGVHYRLESPYVPIAVPAVVKLAGAVC
Ga0209580_1000000291	3300027842	Surface Soil	MKAFKSGEQVPASGTYLTLHLTPHRIPERELYFEGSRFPECKVCPAGVLYKLESPCVPIAMPAVTEIAATAC
Ga0209166_100007317	3300027857	Surface Soil	MKALKSGEKVPASGTYRVLHSVPHVTEQRELYFEGSRFPECQICPAGVLYRLESPCVPMGVPAMPELARAAC
Ga0209166_1000073811	3300027857	Surface Soil	MKALKCGDKVPVSGVYRVSHLLPHAPEQREMYFEGSCFPACKVCAAGVDYWLESPCVPMTMVPRIDLARAVC
Ga0209166_100066705	3300027857	Surface Soil	MKVLKSGEKVPASGIYRVMHSTPHILEQREMYVEGSRLPNCEVCPGGVLYRLESPCVPRPVPVTIELASAVC
Ga0209166_1001091310	3300027857	Surface Soil	MKAFMCGEKVPVSGIYRVLHLLPHNADQRELYFEGSRFPTCKVCAAGVHYQLESPYVPMAVPAVVELASAVC
Ga0209167_105131551	3300027867	Surface Soil	LRTARRVIFSIDPARRVQIGGRSMKVLKSGEKVRASGIYRVLHSTPHLAGQREMYFEGSRLPDCELCPGGVLYRLESPCVPLAVPAVIELASAVS
Ga0307474_108627141	3300031718	Hardwood Forest Soil	MKALKSGEKVPASGTYRVLHSVPHVTEQRELYFEGSRFPECQICPAGVLYRLESPCVPMAVPVMTELATAAC
Ga0335085_1000252319	3300032770	Soil	MKALKYGDKVPVSGVYRVSHVPPHPGEERELYFEGSHFPACKVCAGGVFYRLESPYVPMAAPVVAQLTTAVC
Ga0335085_100227957	3300032770	Soil	MEALKCGDKVPASGVYRVSHLLPHTAEQRELYFEGSCFPACKVCASGVFYRLESPCVPMRLMPRIELASAIC
Ga0335085_100835478	3300032770	Soil	MKALKYGDKVPVSGVYRVSHMLPHPGEQRELYFEGSHFPACKVCAGGVFYRLESPYVPMAAPVVAQLTTAAC
Ga0335085_125729921	3300032770	Soil	MEALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSRFPACKVCASGVFYRLESPCVPMRLMPRIELASAIS
Ga0335082_100175163	3300032782	Soil	MKALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGGCFPACKVCASGVFYRLESPCVPMAVVPRIELASAIC
Ga0335079_113388541	3300032783	Soil	MKAFKHGDKVPVSGIYRVSHLLPHSAEQREMYVEGSLFPPCKVCAGGVYYRLESPYVPLAPPAVAQLATSFC
Ga0335078_1000605115	3300032805	Soil	MKTFKHGDKVPVSGVYRVSHLLPHPAGQREMYFEGSYFPVCKVCAGGVFYRLESPYMPMAAPAVPQLTTAVC
Ga0335078_102132502	3300032805	Soil	MKAFKCGEKVPVSGVYRVLHLLPHTGEQREMYLEGSRFPTCNMCPAGVYYRLESACVPMTAAPTIELAAGTC
Ga0335078_103529994	3300032805	Soil	MEALKCGDKVPASGIYRVSHLLPHTAEQREMYFEGSCFPACKVCAAGVFYRLESPCVPMRLMPRIELASAIC
Ga0335080_102412713	3300032828	Soil	MKVLKSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCEFCPGGVLYRLESPCVPLAVPAVIELASAVS
Ga0335070_100152176	3300032829	Soil	GVYRVSHLLPHTAEQREMYFEGSRFPACRVCASDVSYRLESPCVPMAAVPRIELVSAIC
Ga0335070_100793502	3300032829	Soil	MKALKCGDKVPASGVYRVSHLLPHTTEQREMYFEGSCFPACKVCASGVFYRLESPCVPMAVAPRIELASAIC
Ga0335070_106404221	3300032829	Soil	MKAFKCGEKVPVSGVYRVLHLLPHTGEQREMYLEGSRFPTCNMCAAGVYYRLESACVPMTAAPTIELAAATC
Ga0335070_116741211	3300032829	Soil	MKALKCGEKVPVSGIYRVSHLLPHPTEQREMYFEGSCFPACKTCAAGVHYRLESPCVPITTVPSINLGIGVC
Ga0335070_118758422	3300032829	Soil	MKAFKWGEKVPVSGVYRVLHLLPHNADQRELYFEGSRFPICKVCAAGVHYRLESPYVPIAVPAVVELAKAVC
Ga0335069_100279861	3300032893	Soil	MKALKCGEKVPVSGIYRVSHLLPHPTDQREMYFEGSRFPACKVCAAGVHYRLESPCVSMTTMPTIDVGFAVC
Ga0335069_100745524	3300032893	Soil	MKTLKCGDKVPASGVYRVSHLLPHSAEQKEMYFEGSCFPACRVCASGVFYRLESPCVPMAVVPRIELARAIC
Ga0335069_100867291	3300032893	Soil	MKAFNCGEKVPVSGIYKVFHLLPHNGEQREMYFEGSRFPLCKVCAAGVLYRLESPCVRMTVAPTIELAAATC
Ga0335069_101396124	3300032893	Soil	MKALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSCFPACRVCASGVFYRLESPCVPMAAVPRIELASAIC
Ga0335069_102844962	3300032893	Soil	MQVFNCGEKVPVSGIYRVLHLLPHEADQREMYFEGSRFPICRVCAAGVHYRLESPYVPMPVPAVVELAKAS
Ga0335069_115685332	3300032893	Soil	NLEVRDMKALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSRFPACRVCASDVSYRLESPCVPMAAVPRIELVSAIC
Ga0335074_1000267420	3300032895	Soil	MKALKPGEKVPASGIYRVSHLLPHAGEQREMYFEGSYFPPCRVCAAGVHYRLESPCVPMGLMPRIELKTAVC
Ga0335071_100174648	3300032897	Soil	MKALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSRFPACRVCASDVSYRLESPCVPMAAVPRIELVSAIC
Ga0335071_100570332	3300032897	Soil	MKALKCGDKVPASGVYRVSHLLTHTAEQREMYFEGSCFPACRVCASGVFYRLESPCVPMAAVPRIELASAIC
Ga0335072_110276501	3300032898	Soil	MKVLKSGEKVPASGIYRVLHSTPHLADQREMYFEGSRLPDCELCPGGVVYKLESPCVPLAVPAVIELASAVS
Ga0335083_100648761	3300032954	Soil	MKVLKSGDKVPASGIYRVTHSTPHITEQREMYVEGSRLPKCELCPGGVLYRLESPCVPIAIP
Ga0335084_108897131	3300033004	Soil	NLEVRVMEALKCGDKVPASGVYRVSHLLPHTAEQREMYFEGSCFPACKVCASGVFYRLESPCVPMRLMPRIELASAIC
Ga0335077_121030771	3300033158	Soil	MKALKYGDKVPVSGVYRVSHMLPHPGEQRELYFEGSHFPACKVCGGGVFYRLESPYVPMAAPVVAQLTTAVC
Ga0335077_122416241	3300033158	Soil	AFKCGEKVPVSGVYRVLHLLPHTGEQREMYLEGSRFPTCNMCPAGVYYRLESACVPMTAAPTIELAAATC
Ga0326728_100049822	3300033402	Peat Soil	MKALKPEEKVPVSGTYRVLHLLPHPAEQRELYFEGSRFPACKVCAAGVYYRLESPCVPMAVMPKTQLATAVC
Ga0326727_102290793	3300033405	Peat Soil	MKAFKCGEKVPVSGIYRVLHLLPHNADQRELYFEGSRFPTCKVCAAGVHYRLESPYVPMAVPAVVELASAVC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082400

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences