Metagenome / Metatranscriptome Family F082369

Basic Information
Family ID	F082369
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	49 residues
Representative Sequence	ISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT
Number of Associated Samples	90
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.36 %
% of genes near scaffold ends (potentially truncated)	92.04 %
% of genes from short scaffolds (< 2000 bps)	96.46 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (82.301 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (25.664 % of family members)
Environment Ontology (ENVO)	Unclassified (76.991 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (66.372 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1B570J14230_102271332 2B570J29584_10112122 3JGI25908J49247_100864592 4JGI25908J49247_101568991 5JGI25910J50241_100698531 6JGI25910J50241_101848421 7JGI25910J50241_101869041 8Ga0065167_11039392 9Ga0049083_102942911 10Ga0070749_107514702 11Ga0075464_104456943 12Ga0075464_109310042 13Ga0075464_109985792 14Ga0075458_100901091 15Ga0104988_100271 16Ga0105748_103866412 17Ga0114363_11139581 18Ga0114878_11508413 19Ga0102829_12847821 20Ga0114973_106836712 21Ga0114962_106306991 22Ga0114980_100273741 23Ga0114980_105431762 24Ga0114980_107789542 25Ga0114980_108375181 26Ga0114968_106951042 27Ga0114977_106825961 28Ga0114981_102744101 29Ga0114966_106982052 30Ga0114966_107434012 31Ga0114970_106291932 32Ga0114970_106415601 33Ga0114970_107652592 34Ga0114969_101983271 35Ga0114974_108007011 36Ga0115545_11698681 37Ga0129333_114172371 38Ga0119931_10376433 39Ga0153800_10065953 40Ga0157630_10316631 41Ga0164293_106579241 42Ga0164293_107178691 43Ga0164293_109907892 44Ga0164292_105136213 45Ga0164292_110386162 46Ga0164295_111766463 47Ga0170791_110408752 48Ga0181339_10126531 49Ga0181364_10254031 50Ga0181363_10432093 51Ga0181347_11974641 52Ga0181362_11009801 53Ga0181352_11518331 54Ga0181352_11575261 55Ga0181352_11761522 56Ga0181343_11209561 57Ga0181358_12602411 58Ga0181349_12103303 59Ga0181349_12527742 60Ga0181349_12798362 61Ga0181348_12985951 62Ga0181361_1040393 63Ga0181359_10590431 64Ga0181359_11870683 65Ga0194035_12627192 66Ga0211731_103888003 67Ga0208599_10539872 68Ga0208723_10314663 69Ga0222713_106081833 70Ga0181354_12191201 71Ga0181351_12434533 72Ga0181351_12805912 73Ga0244776_102547031 74Ga0208495_10825312 75Ga0208923_10705562 76Ga0255138_10692181 77Ga0208787_11505532 78Ga0208951_11764592 79Ga0209356_11674952 80Ga0208975_11722931 81Ga0208975_11759371 82Ga0209553_10536253 83Ga0209188_12753262 84Ga0209597_11631531 85Ga0209444_103130241 86Ga0209550_107776213 87Ga0209298_100254111 88Ga0209299_10924863 89Ga0119944_10499771 90Ga0315907_110990531 91Ga0315900_104835943 92Ga0315909_105361923 93Ga0315285_109151841 94Ga0315274_115498822 95Ga0315902_111932481 96Ga0315275_126256582 97Ga0315273_128345883 98Ga0334978_0334697_444_629 99Ga0334978_0431356_2_157 100Ga0334986_0325150_3_116 101Ga0334985_0287120_59_244 102Ga0334987_0474745_616_768 103Ga0334995_0608419_426_602 104Ga0335012_0377805_1_114 105Ga0335022_0098236_16_186 106Ga0335027_0373649_472_657 107Ga0335027_0691711_451_606 108Ga0335031_0681385_3_116 109Ga0335036_0754566_300_485 110Ga0335066_0368075_664_792 111Ga0335056_0339791_683_820 112Ga0335016_0161478_1346_1507 113Ga0334997_0489799_50_235
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1B570J14230_102271332 2B570J29584_10112122 3JGI25908J49247_100864592 4JGI25908J49247_101568991 5JGI25910J50241_100698531 6Ga0065167_11039392 7Ga0070749_107514702 8Ga0075464_109985792 9Ga0104988_100271 10Ga0102829_12847821 11Ga0114973_106836712 12Ga0114962_106306991 13Ga0114980_100273741 14Ga0115545_11698681 15Ga0119931_10376433 16Ga0181339_10126531 17Ga0181352_11761522 18Ga0222713_106081833 19Ga0244776_102547031 20Ga0208975_11759371 21Ga0315900_104835943
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48. 1Ga0114974_108007011 2B570J14230_102271332 3JGI25908J49247_100864592 4JGI25910J50241_100698531 5Ga0070749_107514702 6Ga0075464_104456943 7Ga0075464_109985792 8Ga0104988_100271 9Ga0114973_106836712 10Ga0114962_106306991 11Ga0114980_107789542 12Ga0114980_108375181 13Ga0114968_106951042 14Ga0114970_106415601 15Ga0115545_11698681 16Ga0119931_10376433 17Ga0181339_10126531 18Ga0181364_10254031 19Ga0181362_11009801 20Ga0181349_12798362 21Ga0181359_11870683 22Ga0208599_10539872 23Ga0222713_106081833 24Ga0244776_102547031 25Ga0208495_10825312 26Ga0208787_11505532 27Ga0209356_11674952 28Ga0208975_11759371 29Ga0315900_104835943 30Ga0334995_0608419_426_602 31Ga0335016_0161478_1346_1507
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 23.38% Coil/Unstructured: 76.62%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03237	Terminase_6N	3.54

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.96 %
Unclassified	root	N/A	15.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.30 %
Unclassified	root	N/A	15.04 %
Viruses	superkingdom	All Organisms → Viruses	2.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.30 %
Unclassified	root	N/A	15.04 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.88 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001282\|B570J14230_10227133	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300002294\|B570J29584_1011212	Not Available	562	Open in IMG/M
3300003277\|JGI25908J49247_10086459	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300003277\|JGI25908J49247_10156899	Not Available	529	Open in IMG/M
3300003388\|JGI25910J50241_10069853	Not Available	1029	Open in IMG/M
3300003388\|JGI25910J50241_10184842	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300003388\|JGI25910J50241_10186904	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300004693\|Ga0065167_1103939	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005580\|Ga0049083_10294291	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006802\|Ga0070749_10751470	Not Available	519	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.11%
Terrestrial	Environmental → Terrestrial	0.89%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.89%
Freshwater	Environmental → Aquatic → Freshwater	88.50%
Marine	Environmental → Aquatic → Marine	10.62%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	6.19%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.65%
Lake	Environmental → Aquatic → Freshwater → Lake	47.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	34.51%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.89%
River	Environmental → Aquatic → Freshwater → River	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.65%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.25%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	31.86%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.19%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.89%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	0.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.42%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.89%
Drinking Water Treatment Plant	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant	0.89%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.65%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.89%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	20.35%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.54%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.54%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.65%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.65%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	25.66%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	17.70%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.89%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.54%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.89%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.89%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.54%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300002294	Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300007363	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA	Environmental	Open in IMG/M
3300007735	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct	Environmental	Open in IMG/M

Showing 1 to 10 of 90 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J14230_102271332	3300001282	Freshwater	QLISFVGLKTKPQESPIDIVETTHQNWQGYNYTRTTIKLLNDNIEDDTVNA*
B570J29584_10112122	3300002294	Freshwater	LDVHMTQLISFVGLKTKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT*
JGI25908J49247_100864592	3300003277	Freshwater Lake	MTQLISFVGLKTKTQESPIDVVETVHQNWQGVNYTRTTIKLLNDNIADDIANELTERI*
JGI25908J49247_101568991	3300003277	Freshwater Lake	FVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKLLSEQSDDAIITA*
JGI25910J50241_100698531	3300003388	Freshwater Lake	LLDLKLKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT*
JGI25910J50241_101848421	3300003388	Freshwater Lake	QLISFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT*
JGI25910J50241_101869041	3300003388	Freshwater Lake	DVHMTQLISFVGLKTKTQESPIDVVETIHQNWQGVNYTRTTIKLLNDNIADDIANELTERI*
Ga0065167_11039392	3300004693	Freshwater	TKPQESPIDIVQETRTNWTGQPYTVTTIKLLSEQSNNDSINA*
Ga0049083_102942911	3300005580	Freshwater Lentic	LDVHMTQLISFVGLKTKTQESPIDVVETVHQNWQGVNYTRTTIKLLNDNIADDIANELTERI*
Ga0070749_107514702	3300006802	Aqueous	IHMVQLISFVGLKTKPSETPVDIVETVHQNWQGQNYTRTTIKLLNEAPENYIVEV*
Ga0075464_104456943	3300006805	Aqueous	TQIINYVGIKTKPQESPIDIVQETRTNWTGQPYTVTTIKLLSEQSNDDTINA*
Ga0075464_109310042	3300006805	Aqueous	KTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT*
Ga0075464_109985792	3300006805	Aqueous	CMNDWLDIHMVQLISFVGLKTKPQETPIDIVQETRTNWSGNEYTYTTIKLLNDNTV*
Ga0075458_100901091	3300007363	Aqueous	SFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDTVTT*
Ga0104988_100271	3300007735	Freshwater	INFIGINTKPQETPVDIVETTHQNWQGQNYTRTTIKLLNDTTQDDTVTA*
Ga0105748_103866412	3300007992	Estuary Water	QLISFVGLKTKTQESPIDVVETIHQNWQGVNYTRTTIKFLSEPDVNDSITT*
Ga0114363_11139581	3300008266	Freshwater, Plankton	LKTKPSETPVDIVETVHQNWQGQNYTRTTIKLLNEAPENYTVEV*
Ga0114878_11508413	3300008339	Freshwater Lake	LDIHMVQLISFVGLKTKPSETPVDIVETVHQNWQGQNYTRTTIKLLNEAPENYTVEV*
Ga0102829_12847821	3300009026	Estuarine	DVVETVHQNWQGVNYTRTSIKFLSEPDVTDSITT*
Ga0114973_106836712	3300009068	Freshwater Lake	VGLKTKPQESPIDIVQTIHQDWTGKDYTRTTIKLLSEQSDNDTVNA*
Ga0114962_106306991	3300009151	Freshwater Lake	SPINIVQETRTNWTGQPYTVTTIKLLSEQSDDDTVTA*
Ga0114980_100273741	3300009152	Freshwater Lake	ESPIDIVETVHQNWQGVNYTRTTIKFLSEPDINANITT*
Ga0114980_105431762	3300009152	Freshwater Lake	QLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT*
Ga0114980_107789542	3300009152	Freshwater Lake	WLKEHMTQLINYIGIKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDTVTT*
Ga0114980_108375181	3300009152	Freshwater Lake	MVQLISFVGLKTKPQESLIDIVETVHQNWQGVNYTRTTIKLLNEQTNDDSITA*
Ga0114968_106951042	3300009155	Freshwater Lake	TQLISFVGLKTKPQESPIDIVQTIHQDWTGKDYTRTTIKLLNDNLADDIANELTERI*
Ga0114977_106825961	3300009158	Freshwater Lake	IDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT*
Ga0114981_102744101	3300009160	Freshwater Lake	QESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDTVTT*
Ga0114966_106982052	3300009161	Freshwater Lake	GLKTKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT*
Ga0114966_107434012	3300009161	Freshwater Lake	HMVQLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDTVTT*
Ga0114970_106291932	3300009163	Freshwater Lake	GLKTKPQESPIDIVQTIHQDWTGKDYTRTTIKLLSEQSDNDTVNA*
Ga0114970_106415601	3300009163	Freshwater Lake	TQLISFVGLKTKTQESPIDVVETVHQNWQGEKYTRTTIKFLSEPDVNDSITT*
Ga0114970_107652592	3300009163	Freshwater Lake	DVHMTQLISFVGLKTKPQESPIDIVQTIHQDWTGKDYTRTTIKLLNDNLADDIANELTERI*
Ga0114969_101983271	3300009181	Freshwater Lake	ISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDINANITT*
Ga0114974_108007011	3300009183	Freshwater Lake	ISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT*
Ga0115545_11698681	3300009433	Pelagic Marine	NFVGINTKPQETPVDIVETVHQDWTGRDYTRTTIKLLNNTTQDDTVTAYLTRKV*
Ga0129333_114172371	3300010354	Freshwater To Marine Saline Gradient	QESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTA*
Ga0119931_10376433	3300011984	Drinking Water Treatment Plant	KTKPQETPVDIVETVHQDWHGRNYTRTTIKLLNDNLADDIVNQTNIQV*
Ga0153800_10065953	3300011995	Freshwater	IDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT*
Ga0157630_10316631	3300012722	Freshwater	ESPIDIVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT*
Ga0164293_106579241	3300013004	Freshwater	LISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT*
Ga0164293_107178691	3300013004	Freshwater	SFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDINANITT*
Ga0164293_109907892	3300013004	Freshwater	DVHMTQLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKLLNDSIEDDTVNA*
Ga0164292_105136213	3300013005	Freshwater	NNWLDVHMTQLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0164292_110386162	3300013005	Freshwater	LISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT*
Ga0164295_111766463	3300013014	Freshwater	LINYVGLKTKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT*
Ga0170791_110408752	3300013295	Freshwater	KTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDTVTT*
Ga0181339_10126531	3300017700	Freshwater Lake	QESPIDVVETVHQNWQGVNYTRTTIKLLNDNIVGANIIT
Ga0181364_10254031	3300017701	Freshwater Lake	INYVGLKTKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPNVNDSITT
Ga0181363_10432093	3300017707	Freshwater Lake	PIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDTVTT
Ga0181347_11974641	3300017722	Freshwater Lake	LKTKPQESPVDIVQTTHKAWNGQDYTRTTIKLLSEQSDDDTVTA
Ga0181362_11009801	3300017723	Freshwater Lake	KWLAKHMTQLINYVGINTKPQETPIVIVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0181352_11518331	3300017747	Freshwater Lake	ISFVGLKTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0181352_11575261	3300017747	Freshwater Lake	QESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0181352_11761522	3300017747	Freshwater Lake	VGLKTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0181343_11209561	3300017766	Freshwater Lake	SPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0181358_12602411	3300017774	Freshwater Lake	SFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANIIT
Ga0181349_12103303	3300017778	Freshwater Lake	FVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKLLSEQSDDAIITA
Ga0181349_12527742	3300017778	Freshwater Lake	FVGLKTKPQESPVDIVQTTHKAWNGQDYTRTTIKLLSEQSDDDTVTA
Ga0181349_12798362	3300017778	Freshwater Lake	FVGLKTKPQESPVDIVQTTHKAWNGQDYTRTTIKLLSEQSDNDTVTA
Ga0181348_12985951	3300017784	Freshwater Lake	SFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0181361_1040393	3300019783	Freshwater Lake	FVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0181359_10590431	3300019784	Freshwater Lake	KPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0181359_11870683	3300019784	Freshwater Lake	DNWLDVHMTQLISFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKLLSEQSDDAIITA
Ga0194035_12627192	3300020167	Anoxic Zone Freshwater	NWLDVHMTQLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0211731_103888003	3300020205	Freshwater	QLISFVGLKTKPQESPVDIVETVHQNWQGVNYTRTTIKLLSEQSDNDTVTA
Ga0208599_10539872	3300020554	Freshwater	FVGLKTKPQESPIDIVETTHQNWQGINYTRTTIKLLSDQENADTVTA
Ga0208723_10314663	3300020571	Freshwater	DVHMVQLISFVGLKTKPQESPIDIVETTHQNWQGYNYTRTTIKLLNDNIEDDTVNA
Ga0222713_106081833	3300021962	Estuarine Water	HLTQLVNFVGLKTKPQESPIEIVETVHQDWQGHNYTRTTIKLLNNTTQNDNVTA
Ga0181354_12191201	3300022190	Freshwater Lake	VHMTQLISFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKLLSEQSDDAIITA
Ga0181351_12434533	3300022407	Freshwater Lake	TKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0181351_12805912	3300022407	Freshwater Lake	MNNWLDVHMTQLISFVGLKTKTQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSIT
Ga0244776_102547031	3300024348	Estuarine	LINYVGIKTKPNETPIDIVEETNTNWQGEKYTRTTIKFLSDPDVNDSITT
Ga0208495_10825312	3300025476	Freshwater	LINHVGIKTKPQESPIDIVQETRTNWTGQPYTVTTIKLLSEQTSNDTVNA
Ga0208923_10705562	3300027320	Estuarine	TQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0255138_10692181	3300027333	Freshwater	HMTQLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0208787_11505532	3300027518	Deep Subsurface	LISFVGLKTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPRIDDTVTT
Ga0208951_11764592	3300027621	Freshwater Lentic	LDVHMTQLISFVGLKTKTQESPIDVVETVHQNWQGVNYTRTTIKLLNDNIADDIANELTERI
Ga0209356_11674952	3300027644	Freshwater Lake	QLISFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0208975_11722931	3300027659	Freshwater Lentic	KTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0208975_11759371	3300027659	Freshwater Lentic	FVGLKTKPQESPVDIVQTTHKAWNGQDYTRTTIKLLNQPTQDDTVTA
Ga0209553_10536253	3300027688	Freshwater Lake	ISFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0209188_12753262	3300027708	Freshwater Lake	KPQESPINIVQETRTNWTGNPYTVTTIKLLSEQSNNDSINA
Ga0209597_11631531	3300027746	Freshwater Lake	ESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0209444_103130241	3300027756	Freshwater Lake	TQLISFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0209550_107776213	3300027892	Freshwater Lake	TQLISFVGLKTKLQESPIDVVETVHQNWQGVNYTRTTIKLLSEQSDDAIITA
Ga0209298_100254111	3300027973	Freshwater Lake	ESPIDIVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0209299_10924863	3300027974	Freshwater Lake	QESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDTVTT
Ga0119944_10499771	3300029930	Aquatic	GLKTKPSETPVDIVETVHQNWQGQNYTRTTIKLLNEAPENYIVEV
Ga0315907_110990531	3300031758	Freshwater	QESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0315900_104835943	3300031787	Freshwater	TKPQESPIDIELTTHKAWNGQEYTRTTIKLLNDNIVGANIIT
Ga0315909_105361923	3300031857	Freshwater	IDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0315285_109151841	3300031885	Sediment	YIGIKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0315274_115498822	3300031999	Sediment	TKTQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDINANITT
Ga0315902_111932481	3300032093	Freshwater	MNNWLDVHMTQLISFVGLKTKTQESPIDVVETVHQNWQGVNYTRTTIKLLNDNIADDIANELTERI
Ga0315275_126256582	3300032401	Sediment	LHNWLKEHMTQLINYIGIKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDSIT
Ga0315273_128345883	3300032516	Sediment	LISFVGLKTKTQESPIDIVETTHQNWQGVNYTRTTIKLLSEQSEDAIITA
Ga0334978_0334697_444_629	3300033979	Freshwater	MNNWLDVHMTQLISFVGLKTKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSIT
Ga0334978_0431356_2_157	3300033979	Freshwater	QLISFVGLKTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0334986_0325150_3_116	3300034012	Freshwater	SPIDVVETVHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0334985_0287120_59_244	3300034018	Freshwater	MNNWLDVHMTQLISFVGLKTKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPTIDDSIT
Ga0334987_0474745_616_768	3300034061	Freshwater	LISFVGLKTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVTT
Ga0334995_0608419_426_602	3300034062	Freshwater	MTQLINYIGIKTKPQETPVDIVQTVHQNWQGQDYTRTTIKLLNDNLADDIANELTERI
Ga0335012_0377805_1_114	3300034093	Freshwater	SPIDIVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT
Ga0335022_0098236_16_186	3300034095	Freshwater	MNNWLDVHMTQLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPTIV
Ga0335027_0373649_472_657	3300034101	Freshwater	MNNWLDVHMVQLISFVGLKTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVT
Ga0335027_0691711_451_606	3300034101	Freshwater	QLISFVGLKTKPQESPIDIVETTHQNWQGYNYTRTTIKLLNDNIEDDTVNA
Ga0335031_0681385_3_116	3300034104	Freshwater	SPIDVVETTHQNWQGVNYTRTTIKFLSEPDVNDSITT
Ga0335036_0754566_300_485	3300034106	Freshwater	MNDWLDVYMVQLISFVGLKTKPQESPIDIVETTHQNWQGINYTRTTIKFLSEPTIDDTVT
Ga0335066_0368075_664_792	3300034112	Freshwater	TKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT
Ga0335056_0339791_683_820	3300034120	Freshwater	GLKTKPQESPIDVVETVHQNWQGVNYTRTTIKFLSEPTIDDSITT
Ga0335016_0161478_1346_1507	3300034166	Freshwater	MTQLISFVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKLLSEQSDDDTVTV
Ga0334997_0489799_50_235	3300034280	Freshwater	MNKWLNTHMTQLINYVGLKTKPQESPIDIVETVHQNWQGVNYTRTTIKFLSEPDVNDSIT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082369

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences