Metagenome / Metatranscriptome Family F082363

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F082363
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	43 residues
Representative Sequence	ESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Number of Associated Samples	105
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.57 %
% of genes near scaffold ends (potentially truncated)	77.88 %
% of genes from short scaffolds (< 2000 bps)	81.42 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (94.690 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.389 % of family members)
Environment Ontology (ENVO)	Unclassified (41.593 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.283 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 32.86% Coil/Unstructured: 67.14%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13240	zinc_ribbon_2	18.58
PF06271	RDD	16.81
PF00886	Ribosomal_S16	4.42
PF00069	Pkinase	4.42
PF06835	LptC	3.54
PF01741	MscL	2.65
PF01156	IU_nuc_hydro	1.77
PF02272	DHHA1	1.77
PF13083	KH_4	1.77
PF04963	Sigma54_CBD	0.88
PF01047	MarR	0.88
PF01972	SDH_sah	0.88
PF02517	Rce1-like	0.88
PF08448	PAS_4	0.88
PF10825	DUF2752	0.88
PF01782	RimM	0.88
PF11154	DUF2934	0.88
PF03544	TonB_C	0.88
PF13620	CarboxypepD_reg	0.88
PF00118	Cpn60_TCP1	0.88
PF12399	BCA_ABC_TP_C	0.88
PF01145	Band_7	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	17.70
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	16.81
COG0228	Ribosomal protein S16	Translation, ribosomal structure and biogenesis [J]	4.42
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	2.65
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG1957	Inosine-uridine nucleoside N-ribohydrolase	Nucleotide transport and metabolism [F]	1.77
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0806	Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing	Translation, ribosomal structure and biogenesis [J]	0.88
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.88
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.69 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	53.98 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.55 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.16 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.16 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.16 %
Unclassified	root	N/A	5.31 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Unclassified	root	N/A	5.31 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.54 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	1.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Unclassified	root	N/A	5.31 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.65 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	1.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	26.55 %
Unclassified	root	N/A	5.31 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.65 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1.77 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10342395	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300002245\|JGIcombinedJ26739_100104152	All Organisms → cellular organisms → Bacteria	2659	Open in IMG/M
3300004092\|Ga0062389_102938511	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300004474\|Ga0068968_1274003	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300004633\|Ga0066395_10002353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6558	Open in IMG/M
3300005468\|Ga0070707_101713783	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005602\|Ga0070762_10134375	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300005712\|Ga0070764_10163591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1230	Open in IMG/M
3300006052\|Ga0075029_100224182	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300006052\|Ga0075029_100934403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	596	Open in IMG/M
3300006162\|Ga0075030_100487872	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300006804\|Ga0079221_10358737	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300009088\|Ga0099830_11543134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300009523\|Ga0116221_1063470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1687	Open in IMG/M
3300009623\|Ga0116133_1187060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300009630\|Ga0116114_1135309	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300009632\|Ga0116102_1007812	All Organisms → cellular organisms → Bacteria	4004	Open in IMG/M
3300009641\|Ga0116120_1244632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300009645\|Ga0116106_1082301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300010339\|Ga0074046_10122279	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300010341\|Ga0074045_10718504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300010343\|Ga0074044_10077574	Not Available	2246	Open in IMG/M
3300012189\|Ga0137388_10254842	Not Available	1598	Open in IMG/M
3300012189\|Ga0137388_10384290	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300012200\|Ga0137382_11048762	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300012211\|Ga0137377_11328159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300012350\|Ga0137372_10113063	All Organisms → cellular organisms → Bacteria → Acidobacteria	2260	Open in IMG/M
3300012361\|Ga0137360_11365984	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300012363\|Ga0137390_10190911	All Organisms → cellular organisms → Bacteria → Acidobacteria	2035	Open in IMG/M
3300012685\|Ga0137397_10551186	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	858	Open in IMG/M
3300012923\|Ga0137359_10269344	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300012925\|Ga0137419_10565898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	909	Open in IMG/M
3300014155\|Ga0181524_10467652	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300014156\|Ga0181518_10149726	All Organisms → cellular organisms → Bacteria → Acidobacteria	1252	Open in IMG/M
3300014156\|Ga0181518_10559852	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300014159\|Ga0181530_10360785	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300014162\|Ga0181538_10160611	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1283	Open in IMG/M
3300014162\|Ga0181538_10418613	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300014169\|Ga0181531_10064230	All Organisms → cellular organisms → Bacteria → Acidobacteria	2159	Open in IMG/M
3300014498\|Ga0182019_11411787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300014638\|Ga0181536_10140065	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1290	Open in IMG/M
3300015264\|Ga0137403_11511383	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300016730\|Ga0181515_1134241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300017823\|Ga0187818_10003213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6895	Open in IMG/M
3300017823\|Ga0187818_10038501	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300017931\|Ga0187877_1007170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7649	Open in IMG/M
3300017932\|Ga0187814_10267388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300017941\|Ga0187850_10515394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300017943\|Ga0187819_10022431	All Organisms → cellular organisms → Bacteria	3682	Open in IMG/M
3300017946\|Ga0187879_10345902	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	825	Open in IMG/M
3300017955\|Ga0187817_10433207	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300018003\|Ga0187876_1168586	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300018006\|Ga0187804_10041018	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1782	Open in IMG/M
3300018007\|Ga0187805_10221668	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300018008\|Ga0187888_1135319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1020	Open in IMG/M
3300018009\|Ga0187884_10052407	All Organisms → cellular organisms → Bacteria → Acidobacteria	1900	Open in IMG/M
3300018012\|Ga0187810_10129716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300018012\|Ga0187810_10214822	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300018019\|Ga0187874_10275049	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300018020\|Ga0187861_10238204	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300018033\|Ga0187867_10818802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300018035\|Ga0187875_10177325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1183	Open in IMG/M
3300018035\|Ga0187875_10404244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300018044\|Ga0187890_10638257	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300018047\|Ga0187859_10071222	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300018085\|Ga0187772_11166391	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300018086\|Ga0187769_10803336	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	711	Open in IMG/M
3300018088\|Ga0187771_11772219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300018090\|Ga0187770_10055806	All Organisms → cellular organisms → Bacteria → Acidobacteria	2856	Open in IMG/M
3300018431\|Ga0066655_10475847	All Organisms → cellular organisms → Bacteria → Acidobacteria	826	Open in IMG/M
3300019787\|Ga0182031_1535674	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1759	Open in IMG/M
3300021181\|Ga0210388_10638233	Not Available	930	Open in IMG/M
3300021478\|Ga0210402_10754912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300021861\|Ga0213853_10873151	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300022873\|Ga0224550_1024243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300025419\|Ga0208036_1012874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1885	Open in IMG/M
3300027545\|Ga0209008_1057401	Not Available	883	Open in IMG/M
3300027591\|Ga0209733_1081987	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300027633\|Ga0208988_1105638	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300027678\|Ga0209011_1103496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300027738\|Ga0208989_10069097	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300027824\|Ga0209040_10536389	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300027853\|Ga0209274_10011691	All Organisms → cellular organisms → Bacteria	3937	Open in IMG/M
3300027874\|Ga0209465_10053577	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300027875\|Ga0209283_10164263	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300027884\|Ga0209275_10374125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300027898\|Ga0209067_10818130	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300027905\|Ga0209415_10045651	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5785	Open in IMG/M
3300028652\|Ga0302166_10000706	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7130	Open in IMG/M
3300028740\|Ga0302294_10060180	Not Available	895	Open in IMG/M
3300028780\|Ga0302225_10343476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300028870\|Ga0302254_10207668	All Organisms → cellular organisms → Bacteria → Acidobacteria	721	Open in IMG/M
3300029817\|Ga0247275_1035788	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300029903\|Ga0247271_101634	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5505	Open in IMG/M
3300029903\|Ga0247271_105613	All Organisms → cellular organisms → Bacteria → Acidobacteria	2226	Open in IMG/M
3300029907\|Ga0311329_10037382	All Organisms → cellular organisms → Bacteria	4323	Open in IMG/M
3300029956\|Ga0302150_10384808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300029989\|Ga0311365_10659983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300030054\|Ga0302182_10292705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300031234\|Ga0302325_11311064	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300031247\|Ga0265340_10173779	All Organisms → cellular organisms → Bacteria → Acidobacteria	975	Open in IMG/M
3300031446\|Ga0170820_17564866	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031708\|Ga0310686_109937245	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300031753\|Ga0307477_10904583	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300032205\|Ga0307472_100825395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	850	Open in IMG/M
3300033797\|Ga0334815_000808	All Organisms → cellular organisms → Bacteria → Acidobacteria	2988	Open in IMG/M
3300033807\|Ga0314866_084796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300033826\|Ga0334847_001074	All Organisms → cellular organisms → Bacteria	2316	Open in IMG/M
3300033891\|Ga0334811_135640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300033983\|Ga0371488_0547558	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300034090\|Ga0326723_0527238	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300034282\|Ga0370492_0228234	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.18%
Aquatic	Environmental → Aquatic	38.94%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.90%
Freshwater	Environmental → Aquatic → Freshwater	35.40%
Peat	Environmental → Terrestrial → Peat	13.27%
Sediment	Environmental → Aquatic → Sediment	3.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	34.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.89%
Loam	Environmental → Terrestrial → Soil → Loam	13.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.39%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.08%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.54%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.54%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.65%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.65%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.77%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.77%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.89%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004474	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022873	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028740	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033797	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-S	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M
3300033826	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5	Environmental	Open in IMG/M
3300033891	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-D	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103423952	3300001661	Forest Soil	LQLLAGERLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
JGIcombinedJ26739_1001041523	3300002245	Forest Soil	RLQLLAGDRLDIAYTLGLNDHPEFGGLELTLRDLARTRS*
Ga0062389_1029385112	3300004092	Bog Forest Soil	WGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRSG*
Ga0068968_12740032	3300004474	Peatlands Soil	GLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELALRDVLRAR*
Ga0066395_100023531	3300004633	Tropical Forest Soil	SCDSLQLLAGDRLDIAYSLGMNDHPEFGGLELTLQDVQRSR*
Ga0070707_1017137831	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	SCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRTR*
Ga0070762_101343753	3300005602	Soil	GMKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0070764_101635911	3300005712	Soil	CDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSA*
Ga0075029_1002241823	3300006052	Watersheds	LQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRRLP*
Ga0075029_1009344031	3300006052	Watersheds	LQLLAGDRLDIAYALGMNDHPEFGGLELTLRDVVRRLQ*
Ga0075030_1004878723	3300006162	Watersheds	DRLQLLAGDQLDIAYSIGMNDHPEFGGLELTLRDVLRPR*
Ga0079221_103587372	3300006804	Agricultural Soil	CEAMQLLAGDRLDIAYCVGINEHPEFGGLELTLKDVARAS*
Ga0099830_115431341	3300009088	Vadose Zone Soil	LLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRTR*
Ga0116221_10634704	3300009523	Peatlands Soil	CDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0116133_11870602	3300009623	Peatland	QLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRSN*
Ga0116114_11353091	3300009630	Peatland	GLKESCDRLQLLAGDRLDIAYSVGMNDHPEFGGLELTLRDVVRAR*
Ga0116102_10078121	3300009632	Peatland	LKESCDQLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0116120_12446322	3300009641	Peatland	LLAGDRIDIAYTLGMNDHPEFGGLELTLRDVRRCR*
Ga0116106_10823013	3300009645	Peatland	LLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSR*
Ga0074046_101222793	3300010339	Bog Forest Soil	WGLKESCDRLQLLAGDRLDIAYSLGMNDHAEFGGLELTLRDVLRAR*
Ga0074045_107185041	3300010341	Bog Forest Soil	KESCDRLQLLAGDRIDIAYSIGLNDHPEFGGLELTLRDVLRAG*
Ga0074044_100775743	3300010343	Bog Forest Soil	LQLLAGDRLDIAYSLGMNDHPEFGGLELTMRDVVRSA*
Ga0137388_102548421	3300012189	Vadose Zone Soil	RLQLLSGDRLDIAYSLGMNDHPEFGGLELILRDVVRGR*
Ga0137388_103842904	3300012189	Vadose Zone Soil	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLREVRRTSV*
Ga0137382_110487622	3300012200	Vadose Zone Soil	LQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0137377_113281592	3300012211	Vadose Zone Soil	LLQGDRLDVVYSLGMNDHPEFGGLELTIRDVARTR*
Ga0137372_101130631	3300012350	Vadose Zone Soil	CDRLQLLAGDRLDIAYTLGMNDHPEFGGLELTLRDVRRNS*
Ga0137360_113659841	3300012361	Vadose Zone Soil	QLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVMRAR*
Ga0137390_101909114	3300012363	Vadose Zone Soil	LQLLAGDRLDIAYSLGMNDHPEFGGLELILRDVVRGR*
Ga0137397_105511862	3300012685	Vadose Zone Soil	MGWGLKESCDQLQLLAGDRLDIAYSLGMNDHPEFGGLELTLQDVTQSK*
Ga0137359_102693443	3300012923	Vadose Zone Soil	AMGWGLKESCDQLQLLAGDRLDVAYSLGMNDHPEFGGLELTLRDVARTR*
Ga0137419_105658982	3300012925	Vadose Zone Soil	MGWGLKESCDQLQLLAGDRLDIAYSLGMNDHPEFGGLELTLQDATQSK*
Ga0181524_104676521	3300014155	Bog	CDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRAR*
Ga0181518_101497261	3300014156	Bog	ESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0181518_105598522	3300014156	Bog	WGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0181530_103607851	3300014159	Bog	RLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0181538_101606113	3300014162	Bog	CERLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0181538_104186131	3300014162	Bog	MKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSR*
Ga0181531_100642301	3300014169	Bog	MKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELSLKDVVRTR*
Ga0182019_114117872	3300014498	Fen	LAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0181536_101400654	3300014638	Bog	LLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR*
Ga0137403_115113831	3300015264	Vadose Zone Soil	LLAGDHLDVAYSLGMNDHPEFGGLELTLRDVVRSG*
Ga0181515_11342411	3300016730	Peatland	ESCDRLQLLAGDRLDIAYSVGMNDHPEFGGLELTLRDVVRAR
Ga0187818_100032138	3300017823	Freshwater Sediment	LQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Ga0187818_100385011	3300017823	Freshwater Sediment	RLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Ga0187877_10071706	3300017931	Peatland	MGWGLKESSDRLQLLAGDCLDIAYSLSMNDHPEFGGLELTLRDVARVR
Ga0187814_102673881	3300017932	Freshwater Sediment	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAG
Ga0187850_105153941	3300017941	Peatland	SDRLQLLAGDCLDIAYSLSMNDHPEFGGLELTLRDVARVR
Ga0187819_100224315	3300017943	Freshwater Sediment	GLRESCDRLTLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Ga0187879_103459021	3300017946	Peatland	KESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDLVRAR
Ga0187817_104332071	3300017955	Freshwater Sediment	SCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSR
Ga0187876_11685861	3300018003	Peatland	RLQLLAGDCLDIAYSLSMNDHPEFGGLELTLRDVVRSR
Ga0187804_100410182	3300018006	Freshwater Sediment	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSR
Ga0187805_102216682	3300018007	Freshwater Sediment	LLAGDRLDIAYTLGLNDHPEFGGLELTLRDLVRTSNK
Ga0187888_11353192	3300018008	Peatland	MKESCDRLQLLAGDRLDIAYSPGMNDHPEFGGLELTLRDVMRAR
Ga0187884_100524073	3300018009	Peatland	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Ga0187810_101297162	3300018012	Freshwater Sediment	GWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Ga0187810_102148221	3300018012	Freshwater Sediment	MGWGLKESCDQLQTLAGDRLDIAYKLGMNDHPEFGGLELTLRDVVRRIR
Ga0187874_102750492	3300018019	Peatland	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRAH
Ga0187861_102382041	3300018020	Peatland	TFKAMGWGLQECCDRLQLLSGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSR
Ga0187867_108188022	3300018033	Peatland	RLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRSN
Ga0187875_101773251	3300018035	Peatland	ESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRSN
Ga0187875_104042441	3300018035	Peatland	FCDKLQLLAGDRLDIAYTLGMNDHPEFGGLELTLRDLRRTG
Ga0187890_106382571	3300018044	Peatland	QTMGWSLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRSN
Ga0187859_100712221	3300018047	Peatland	KESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDIVRS
Ga0187772_111663912	3300018085	Tropical Peatland	GWGLRESCERLQLLAGDRLDIAYTLGINDHPEFGGLELTLRDIIRSGN
Ga0187769_108033362	3300018086	Tropical Peatland	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDLVRSR
Ga0187771_117722192	3300018088	Tropical Peatland	LAGDRLDIAYSLSTNDHPEFGGLELTLRDLVRTNNPHK
Ga0187770_100558065	3300018090	Tropical Peatland	LLAGDRLDIAYALAMNDHPEFGGLELTLRDALRNG
Ga0066655_104758471	3300018431	Grasslands Soil	GWGLKETCDQLQLLAGDNVEIAYCLGMNDHPEYGGLELALRDIRRTRP
Ga0182031_15356742	3300019787	Bog	MAQQHCVKAMGWRMKESCDRLQLLAGDRLDIAYSPGMNDHPEFGGLELTLRDVMRAR
Ga0210388_106382332	3300021181	Soil	GLRESCERLQLLAGDRLDIAYTLGLNDHPEFGGLELTLRDIARA
Ga0210402_107549121	3300021478	Soil	LQLLAGDRLDIAYSLGMNHHPEFGGLELTLRDVVRTP
Ga0213853_108731512	3300021861	Watersheds	DKLQLLAGDRLDIAYTLGMNDHPEFGGLELTLRDLRRGA
Ga0224550_10242432	3300022873	Soil	WGLKESCDRLQLLAGDRLDIAYSLGMNDHPDFGGPELTLRDVVRTE
Ga0208036_10128741	3300025419	Peatland	AMGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRTR
Ga0209421_10879351	3300027432	Forest Soil	CDRLQLLAGDRLDIAYTLGLNDHPEIGGLELTLRDIMRHNVDVVTRAG
Ga0209008_10574012	3300027545	Forest Soil	ERLQLLAGDRLDIAYTLGLNDHPEFGGLELTLRDLARTRS
Ga0209733_10819872	3300027591	Forest Soil	MGWGLKESCDRLQLLAGDRIDIAYSLGMNDHPEFGGLELTLRDVVRERRTE
Ga0208988_11056382	3300027633	Forest Soil	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSS
Ga0209011_11034962	3300027678	Forest Soil	QLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRSR
Ga0208989_100690971	3300027738	Forest Soil	SCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDLVRAR
Ga0209040_105363892	3300027824	Bog Forest Soil	QLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAG
Ga0209274_100116911	3300027853	Soil	LQLLTGDRLDIAYSLGMNDHPEFGGLELALRDVMRSK
Ga0209465_100535773	3300027874	Tropical Forest Soil	SCDSLQLLAGDRLDIAYSLGMNDHPEFGGLELTLQDVQRSR
Ga0209283_101642633	3300027875	Vadose Zone Soil	KESCDRLRLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRTR
Ga0209275_103741251	3300027884	Soil	GMKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Ga0209067_108181302	3300027898	Watersheds	LLAGDQLDIAYTLGLNDHPEFGGLELTLRDLVRTSNK
Ga0209415_100456511	3300027905	Peatlands Soil	ESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAR
Ga0302166_100007061	3300028652	Fen	MQLLAGDRLDIAYQLGMNDHPEFGGLELTLQDVVRSK
Ga0302294_100601802	3300028740	Fen	MGWGKKESCDRLQLLAGDHLDIAYILGMNDHPEFGGLELTLRDIARSR
Ga0302225_103434761	3300028780	Palsa	LQLLAGDRLDIAYSIGMNDHPEFGGLELGLRDVVRAR
Ga0302254_102076682	3300028870	Fen	KESCDQMQLLAGDRLDIAYQLGMNDHPEFGGLELTLQDVVRSK
Ga0247275_10357881	3300029817	Soil	WGLKESSDRLQLLAGDCLDIAYSLSMNDHPEFGGLELTLRDVARVR
Ga0247271_1016342	3300029903	Soil	MGWGLKESCDSLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRAP
Ga0247271_1056132	3300029903	Soil	MGWSLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVLRSN
Ga0311329_100373823	3300029907	Bog	MKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELSLKDVVRTR
Ga0302150_103848082	3300029956	Bog	SCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELSLKDVVRTR
Ga0311365_106599832	3300029989	Fen	LQLLAGDTLDIAYKLGMNDHPEFGGLELTLQDVARARLDH
Ga0302182_102927052	3300030054	Palsa	KESCERLQLLAGDRLDIAYSIGMNDHPEFGGLELGLRDVVRAR
Ga0302325_113110642	3300031234	Palsa	KAMGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELSLRDVVRTP
Ga0265340_101737792	3300031247	Rhizosphere	EACDRLHLLAGDQLDIAYSVGMNDHPDFGGLELTLRDVVRAA
Ga0170820_175648662	3300031446	Forest Soil	MGWGLKETCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTVRDVVRAAR
Ga0310686_1099372451	3300031708	Soil	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELSLRDVVRTP
Ga0307477_109045832	3300031753	Hardwood Forest Soil	MGWGLKETCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTVRDVVRAVR
Ga0307472_1008253952	3300032205	Hardwood Forest Soil	SCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRTR
Ga0334815_000808_499_645	3300033797	Soil	MGWGLKESCDQMQLLAGDRLDIAYQLGMNDHPEFGGLELTLQDVVRSK
Ga0314866_084796_101_250	3300033807	Peatland	MGWGLRESCERLQLLAGDRLDIAYTLGINDHPEFGGLELTLRDIMRSGN
Ga0334847_001074_2099_2245	3300033826	Soil	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDLVRAR
Ga0334811_135640_446_592	3300033891	Soil	MGWGLKESCDRLQLLAGDRLDIAYSLGMNDHPEFGGLELTLRDVVRVR
Ga0371488_0547558_370_504	3300033983	Peat Soil	MKESCDRLQLLAGDRLDIAYSLGMNEHPEFGGLELNLRDVVRAR
Ga0326723_0527238_411_542	3300034090	Peat Soil	KEACDQLQLLAGDRLDIAYTLGMNEHPEFGGLELTLQDVVRSK
Ga0370492_0228234_442_588	3300034282	Untreated Peat Soil	MGWGLKESCDRLQLLAGDRLDIAYSIGMNDHPEFGGLELTLRDVLRSS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082363

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences