Metagenome / Metatranscriptome Family F082289

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082289
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	56 residues
Representative Sequence	TAIAAAILLQRKIHATAIDSNVFTGYSGVNPKKIPIADPKAIECGVSAIVINVM
Number of Associated Samples	103
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.16 %
% of genes near scaffold ends (potentially truncated)	82.30 %
% of genes from short scaffolds (< 2000 bps)	95.58 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (15.929 % of family members)
Environment Ontology (ENVO)	Unclassified (24.779 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.097 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.56% β-sheet: 0.00% Coil/Unstructured: 52.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01904	DUF72	61.06
PF13847	Methyltransf_31	6.19
PF00768	Peptidase_S11	3.54
PF01135	PCMT	2.65
PF01541	GIY-YIG	0.88
PF14366	DUF4410	0.88
PF09835	DUF2062	0.88
PF00365	PFK	0.88
PF02082	Rrf2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	61.06
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	3.54
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	2.65
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	2.65
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	2.65
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	2.65
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.88
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.88
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.88
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.88
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.88
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.88
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.88
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.88
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	85.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.77 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	85.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	26.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.55 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000953\|JGI11615J12901_10892987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	758	Open in IMG/M
3300000955\|JGI1027J12803_106037441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	928	Open in IMG/M
3300001475\|JGI12361J15250_1002450	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	971	Open in IMG/M
3300002903\|JGI24801J43971_1000442	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300004156\|Ga0062589_100858796	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	830	Open in IMG/M
3300004479\|Ga0062595_101860309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300004643\|Ga0062591_100654005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	941	Open in IMG/M
3300005166\|Ga0066674_10276758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	791	Open in IMG/M
3300005171\|Ga0066677_10120121	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1412	Open in IMG/M
3300005180\|Ga0066685_10185643	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1423	Open in IMG/M
3300005181\|Ga0066678_10545253	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300005294\|Ga0065705_10046567	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	875	Open in IMG/M
3300005340\|Ga0070689_100554415	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	991	Open in IMG/M
3300005347\|Ga0070668_102191837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	511	Open in IMG/M
3300005355\|Ga0070671_101698650	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	560	Open in IMG/M
3300005436\|Ga0070713_100243906	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1637	Open in IMG/M
3300005438\|Ga0070701_10173983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1256	Open in IMG/M
3300005440\|Ga0070705_100517387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	909	Open in IMG/M
3300005447\|Ga0066689_10200591	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300005450\|Ga0066682_10374785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	915	Open in IMG/M
3300005454\|Ga0066687_10113273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1387	Open in IMG/M
3300005454\|Ga0066687_10649910	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300005455\|Ga0070663_100908124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300005466\|Ga0070685_10545823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	827	Open in IMG/M
3300005518\|Ga0070699_100473265	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1137	Open in IMG/M
3300005536\|Ga0070697_102114016	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300005543\|Ga0070672_100459771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1097	Open in IMG/M
3300005555\|Ga0066692_10098204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1732	Open in IMG/M
3300005555\|Ga0066692_10156587	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1402	Open in IMG/M
3300005587\|Ga0066654_10420691	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	729	Open in IMG/M
3300005764\|Ga0066903_100087221	All Organisms → cellular organisms → Bacteria	4119	Open in IMG/M
3300006852\|Ga0075433_10592882	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300007265\|Ga0099794_10444143	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300009012\|Ga0066710_103600377	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	584	Open in IMG/M
3300009090\|Ga0099827_11843466	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300009137\|Ga0066709_104536282	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300009792\|Ga0126374_11099115	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	630	Open in IMG/M
3300010043\|Ga0126380_11226849	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	648	Open in IMG/M
3300010046\|Ga0126384_10548573	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1004	Open in IMG/M
3300010047\|Ga0126382_10715898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	842	Open in IMG/M
3300010048\|Ga0126373_10469987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1295	Open in IMG/M
3300010048\|Ga0126373_12964503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	529	Open in IMG/M
3300010301\|Ga0134070_10016509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2368	Open in IMG/M
3300010326\|Ga0134065_10294545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300010333\|Ga0134080_10327512	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	693	Open in IMG/M
3300010359\|Ga0126376_12483754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300010360\|Ga0126372_10640732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1027	Open in IMG/M
3300010361\|Ga0126378_12860679	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	551	Open in IMG/M
3300010376\|Ga0126381_102444861	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	749	Open in IMG/M
3300010398\|Ga0126383_10295161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1616	Open in IMG/M
3300010401\|Ga0134121_12428578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	565	Open in IMG/M
3300012181\|Ga0153922_1040355	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300012200\|Ga0137382_10184592	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300012349\|Ga0137387_10329180	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300012362\|Ga0137361_11200407	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300012895\|Ga0157309_10201077	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	624	Open in IMG/M
3300012900\|Ga0157292_10200708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	667	Open in IMG/M
3300012922\|Ga0137394_10115268	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2272	Open in IMG/M
3300013297\|Ga0157378_10388977	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1371	Open in IMG/M
3300015242\|Ga0137412_10837306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	672	Open in IMG/M
3300015264\|Ga0137403_10613833	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	952	Open in IMG/M
3300015374\|Ga0132255_105915315	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	518	Open in IMG/M
3300017656\|Ga0134112_10052444	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300017656\|Ga0134112_10084092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1184	Open in IMG/M
3300018072\|Ga0184635_10125806	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1019	Open in IMG/M
3300018072\|Ga0184635_10404155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300018073\|Ga0184624_10088545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1312	Open in IMG/M
3300018073\|Ga0184624_10509570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	522	Open in IMG/M
3300018433\|Ga0066667_10829301	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	789	Open in IMG/M
3300018433\|Ga0066667_10837847	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	786	Open in IMG/M
3300018468\|Ga0066662_12848858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	513	Open in IMG/M
3300019867\|Ga0193704_1042240	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	906	Open in IMG/M
3300019869\|Ga0193705_1086783	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	594	Open in IMG/M
3300019886\|Ga0193727_1054991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1272	Open in IMG/M
3300020000\|Ga0193692_1045584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1001	Open in IMG/M
3300020005\|Ga0193697_1053978	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	997	Open in IMG/M
3300020006\|Ga0193735_1040953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1396	Open in IMG/M
3300021078\|Ga0210381_10030696	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1509	Open in IMG/M
3300021344\|Ga0193719_10351038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	613	Open in IMG/M
3300021560\|Ga0126371_10032851	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	4872	Open in IMG/M
3300022534\|Ga0224452_1219416	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	583	Open in IMG/M
3300022694\|Ga0222623_10202546	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	770	Open in IMG/M
3300024330\|Ga0137417_1135811	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1338	Open in IMG/M
3300025271\|Ga0207666_1062177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	598	Open in IMG/M
3300025931\|Ga0207644_10902242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	741	Open in IMG/M
3300025932\|Ga0207690_11112886	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	658	Open in IMG/M
3300026067\|Ga0207678_10529553	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1029	Open in IMG/M
3300026089\|Ga0207648_10720255	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	925	Open in IMG/M
3300026310\|Ga0209239_1227466	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	650	Open in IMG/M
3300026316\|Ga0209155_1118075	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	928	Open in IMG/M
3300026324\|Ga0209470_1142056	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1057	Open in IMG/M
3300026324\|Ga0209470_1212186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	807	Open in IMG/M
3300026325\|Ga0209152_10177308	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300026480\|Ga0257177_1059689	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300026507\|Ga0257165_1113783	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300026524\|Ga0209690_1153786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	837	Open in IMG/M
3300026529\|Ga0209806_1010303	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5058	Open in IMG/M
3300026540\|Ga0209376_1132068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1223	Open in IMG/M
3300027882\|Ga0209590_10303482	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1025	Open in IMG/M
3300028793\|Ga0307299_10247559	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	670	Open in IMG/M
3300028796\|Ga0307287_10081711	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1212	Open in IMG/M
3300028828\|Ga0307312_11132116	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	518	Open in IMG/M
3300030844\|Ga0075377_11797631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	551	Open in IMG/M
3300031446\|Ga0170820_12099954	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300031744\|Ga0306918_10711386	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	786	Open in IMG/M
3300031847\|Ga0310907_10535526	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	631	Open in IMG/M
3300031941\|Ga0310912_10643806	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	823	Open in IMG/M
3300031941\|Ga0310912_11418490	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	524	Open in IMG/M
3300031942\|Ga0310916_10916667	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	734	Open in IMG/M
3300032179\|Ga0310889_10339092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
3300032205\|Ga0307472_100481005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1065	Open in IMG/M
3300032261\|Ga0306920_100482668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1840	Open in IMG/M
3300032261\|Ga0306920_101274847	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1058	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.38%
Host-Associated	Host-Associated	10.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.19%
Plants	Host-Associated → Plants	9.73%
Aquatic	Environmental → Aquatic	6.19%
Fungi	Host-Associated → Fungi	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.96%
Sediment	Environmental → Aquatic → Sediment	5.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Mycelium	Host-Associated → Fungi → Mycelium	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.45%
Loam	Environmental → Terrestrial → Soil → Loam	9.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001475	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN102	Environmental	Open in IMG/M
3300002903	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um Nextera	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_108929871	3300000953	Soil	MSTSCSVTAMAAAILLQRQTHATAIDNNVLRGYSGVKPKKIPMAEPNAMECGVSAMVISV
JGI1027J12803_1060374413	3300000955	Soil	CNVTAIAAAILLQRKTHATAIDKSVFSGYKGVKPKKIPIADPSAIECGVS
JGI12361J15250_10024502	3300001475	Soil	MSCKVTAIAAAILFDLNTHATAIESSVFMLQSGVKPKKIPMADPSAIECGVS
JGI24801J43971_10004422	3300002903	Soil	VNTAIAAAILLQRKIHATAIDSNVFTGYSGVNPKKIPIAEPRAIECGVSAIVIKVM*
Ga0062589_1008587962	3300004156	Soil	MSCKVTAIAAAILLHLKIHATAMESSVFRLQSGVNPKKIPMADPRAMECGVSAIVINVI*
Ga0062595_1018603091	3300004479	Soil	MSCKVTAIAAAILLDLNIHATPMESRVFKLQSGVNPKKIPMAEPRA
Ga0062591_1006540051	3300004643	Soil	MSCKVTAIAAAILLHLKIHATAMESSVFRLQSGVNPKKIPIADPRAMECGVSAIVINVI*
Ga0066674_102767582	3300005166	Soil	MTSCSVTAIAAAILLQRQTQATAIDNTVLSGYSGVNPKKIPIAEPSAIECGVSAIA
Ga0066677_101201212	3300005171	Soil	MAQIMTSCSVTAIAAAILLQRKTQATAIDNNVLSGYSGVKPKKIPIADPSAIECGVSAIAINVM*
Ga0066685_101856432	3300005180	Soil	MAAAILLQRHTQATAIDKSVFSGYNGVKPKKIPIADPSAIECGVSAIAINVM*
Ga0066678_105452532	3300005181	Soil	TAIAAAILLQRNSHAVAIESNVLRLQSGVNPKKIPMAEPSATECGVSAIAINVM*
Ga0065705_100465672	3300005294	Switchgrass Rhizosphere	MSCKVTAIAAAILLHLKIHATAMESSVFRLQSGVNPKKIPMADPRAMECGVSAIVIXVI*
Ga0070689_1005544151	3300005340	Switchgrass Rhizosphere	CSVTAIAAAILLQRKTHATAIDSNVFTGYSGVNPKKIPIADPRAIECGVSAIVINVI*
Ga0070668_1021918371	3300005347	Switchgrass Rhizosphere	AQIKTSCSVTAIAAAILLHRQTHATAIDSNVLSGYSGVKPKKIPIAEPKAMECGESAIVISVM*
Ga0070671_1016986502	3300005355	Switchgrass Rhizosphere	LLQRQTQAARIESNVLSGYNGVKPKKTPMADPNAIECGVSAIAIKVM*
Ga0070713_1002439062	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSCKVTAIAAAILLHLKIHATAMESSVFRLQSGVNPKKIPMADPRAMECGVSAMVINVM*
Ga0070701_101739831	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	AILLQRKTHATAIDSNVFTGYSGVNPKKIPIADPRAIECGVSAIVINVI*
Ga0070705_1005173872	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	SVTAIAAAILLQRKTHATAIDSNVFTGYSGVNPKKIPIADPRAIECGVSAIVINVI*
Ga0066689_102005911	3300005447	Soil	CTVTAIAAATLLHRHIHATAMESNVFKLQNGVNPKKIPMAEPSAIECGVSAIVINVM*
Ga0066682_103747852	3300005450	Soil	TYNAGIAQIITSCSVTAIAAAILLQRQIHATAIDNNVFSGYSGVKPKKIPMADPRAIECGVSAIAIRVM*
Ga0066687_101132731	3300005454	Soil	IAAATLLDLNTHATPMESNVFMVQSGVNPKKIPMAEPRAIEWGVSAIVIRVM*
Ga0066687_106499101	3300005454	Soil	MSCKVTAIAAAILLDLNTHATPIDSSVFMVHRGVNPKKIPMAEPRAIEWGV
Ga0070663_1009081241	3300005455	Corn Rhizosphere	RTSCSVTAIAAAILLQRKTHATAIDSNVFTGYSGVNPKKIPIADPRAIECGVSAIVINVI
Ga0070685_105458232	3300005466	Switchgrass Rhizosphere	AQIRTSCSVTAIAAAILLQRKTHATAIDSNVFTGYSGVNPKKIPIADPRAIECGVSAIVINVI*
Ga0070699_1004732651	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAAAILLERQTQATAMESRVFMLQSGVKPKKIPIAEPSAIECGVSLIAINVM*
Ga0070697_1021140161	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AAAILLQRKTHATAIDSNVFSGYNGVNPKKIPIADPSAIECGVSAIAINVM*
Ga0070672_1004597712	3300005543	Miscanthus Rhizosphere	LLQRKTHATTIDSNVFSGYSGLNPKKIPIAEPKAIECGVSAIVINVI*
Ga0066692_100982041	3300005555	Soil	VTAIAAAILLQREIHATAIESNVFSGYSGVNPKKIPMADPRAMECGVSAIATNVM*
Ga0066692_101565873	3300005555	Soil	TSCNVTAIAAAILLQRKTHATAIDSNVFSGYNGVNPKKIPIADPSAIECGVSAIAINVM*
Ga0066654_104206912	3300005587	Soil	VTATAAAILLQRETQATPIDNNVFSGYSGVNPKKIPMAEPRAIECGVSAIAINVM*
Ga0066903_1000872214	3300005764	Tropical Forest Soil	MAAAILLQREIHATAIDNSVFSGYSGVKPKKIPIAEPSAMECGVSAIVISVM*
Ga0075433_105928821	3300006852	Populus Rhizosphere	VTAIAAATLLQRQIHATAIDSSVFRGYNGVKPKKIPIAEPRAIECGVSAIAIKVM*
Ga0099794_104441431	3300007265	Vadose Zone Soil	ATLLHRHTHATAIESNVFKLQSGVNPKKIPIADPSAIECGVSAIVTSVIW*
Ga0066710_1036003772	3300009012	Grasslands Soil	SVTAIAAAILLQRKTQATAIDNNVLSGYSGVKPKKIPIADPSAIECGVSAIAINVM
Ga0099827_118434661	3300009090	Vadose Zone Soil	PRRRHGCATIPAAIAAAILLDRQIQATAIESNVFRLHSGVNPKKIPIADPSAIECGVSAIVTSVM*
Ga0066709_1045362821	3300009137	Grasslands Soil	TAIAAAILLHRHIHARAIERSVFKLQSGVNPKKIPIADPSAIECGVSAIVTSVIW*
Ga0126374_110991152	3300009792	Tropical Forest Soil	AILLHLHIHATPMESRVFMLQSGVKPKKIPMADPSAIECGVSAIVINVM*
Ga0126380_112268492	3300010043	Tropical Forest Soil	AAAILLQRKIHATAIESSVFRGYNGVKPKKIPIAEPRAIECGVSAIAINVM*
Ga0126384_105485731	3300010046	Tropical Forest Soil	AGIAKITTSCNVTAIAAAILLQRQIHATPIDSNVLTGYSGVNPKKIPMADPKAIECGVSAIVINVM*
Ga0126382_107158981	3300010047	Tropical Forest Soil	AGIAQITTSCNVTAIAAATLLQRQIHATVIDSSVFRGYNGVKPKKIPIAEPRAIECGVSAIAIKVM*
Ga0126373_104699871	3300010048	Tropical Forest Soil	TYMAGIAQITTSCSVTAMAAAILLQREIHATAIDNSVFSGYSGVKPKKIPIAEPSAMECGVSAIVISVM*
Ga0126373_129645031	3300010048	Tropical Forest Soil	AIAAAILLQRQIQATAIDSSVFSGYSGVKPKKTPIADPRAMECGVSAIASNVM*
Ga0134070_100165095	3300010301	Grasslands Soil	IAAAILLHRHIHAITMESSVFRLQSGVKPKKIPIAEPSAIECGVSAIVISVMW*
Ga0134065_102945452	3300010326	Grasslands Soil	ILLQRQAHATAIDNNVLSGYSGVKPKKIPMADPRAMECGVSAIAIRVM*
Ga0134080_103275121	3300010333	Grasslands Soil	ATLLQRKTHATAIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIVINVM*
Ga0126376_124837542	3300010359	Tropical Forest Soil	WYSATYNAGIAQITTSCNVTAIAAAILLQRKIHATAIDNNVFNGYSGVNPKKIPIAEPRAIECGVSAIVINVM*
Ga0126372_106407322	3300010360	Tropical Forest Soil	QRKTQATAIERSVFSGYSGVNPKKIPIAEPRAIECGVSAIAINVM*
Ga0126378_128606791	3300010361	Tropical Forest Soil	MAGIAQITTSCSVTAMAAAILLQREIHATAIDNSVFSGYSGVKPKKIPIAEPSAMECGVSAIVISVM*
Ga0126381_1024448612	3300010376	Tropical Forest Soil	LHLHIHATPIESRVFMLQSGVKPKKIPMAEPSAIECGVSAIVINVM*
Ga0126383_102951613	3300010398	Tropical Forest Soil	AGIAQITTSCSVTAIAAAILLQRKIHATAIDNNVFNGYSGVNPKKIPIAEPRAIECGVSAIVINVM*
Ga0134121_124285781	3300010401	Terrestrial Soil	AAILLQRKIHATAIDSNVFSGYSGVKPKKIPIADPRAIECGVSAIVINVM*
Ga0153922_10403551	3300012181	Attine Ant Fungus Gardens	TKISTSWIVTAIAAAILLQRHTQATAMESKVLRLYNGVKPKKIPIADPSAMEWGVSAIVTSVT*
Ga0137382_101845923	3300012200	Vadose Zone Soil	LQRQIHATAIDNSVLSGYSGVNPKKIPIADPSAIECGVSAIAISVM*
Ga0137387_103291801	3300012349	Vadose Zone Soil	IAAATLLHRHTHATAIESNVFRLQSGVKPKNIPMADPSAIECGVSAIVTSVMW*
Ga0137361_112004073	3300012362	Vadose Zone Soil	LLQRQIHATAIDNSVLSGYSGVNPKKIPIADPSAIECGVSAIASSVM*
Ga0157309_102010772	3300012895	Soil	TLLQRKTHATTIDSNVFSGYSGVKPKKIPIADPKAIECGVSAIVINVM*
Ga0157292_102007082	3300012900	Soil	TAIAAAILLQRKIHATTIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIVINVM*
Ga0137394_101152685	3300012922	Vadose Zone Soil	ILLQRKIHATAIDNNVFSGYSGVKPKKIPIADPRAIECGVSAIVINVM*
Ga0157378_103889773	3300013297	Miscanthus Rhizosphere	LLHRHIQAAAIDKSVLNGYSGVNPKKIPMAEPRAMEWGVSAIVIRVM*
Ga0137412_108373062	3300015242	Vadose Zone Soil	TAIAAATLLQRKTHAAAIDSNVFSGYSGVNPKKIPIADPRAIECGVSAIVINVM*
Ga0137403_106138332	3300015264	Vadose Zone Soil	IRTSCSVTAIAAAMLLHRKIQATAIDNNVFSGYSGVNPKKIPIADPRAIECGVSAIVINVM*
Ga0132255_1059153152	3300015374	Arabidopsis Rhizosphere	QIRTSCSVTAIAAAILLQRKTHATAIDSNVFSGYSGVNPKKIPIADPRAIECGVSAIVINVM*
Ga0134112_100524442	3300017656	Grasslands Soil	MTSCSVTAIAAAILLQRQAHATAIDNNVLSGYSGVKPKKIPMADPRAMECGVSAIAIKVM
Ga0134112_100840922	3300017656	Grasslands Soil	MAQIITSCRVTAIAAAILLQRQTQATAIDNNVFSGYNGVKPKKIPMADPSAMECGVSAIAISVM
Ga0184635_101258062	3300018072	Groundwater Sediment	AAAILLQRKIHATAIDSNVFTGYSGVNPKKIPIADPKAIEWGVSAIVINVM
Ga0184635_104041551	3300018072	Groundwater Sediment	AAAILLQRKIHATAIDSNVFTGYSGVNPKKIPIADPKAIECGVSAIVINVM
Ga0184624_100885451	3300018073	Groundwater Sediment	TLLQRKTHATAIDSNVFTGYSGVNPKKIPIADPKAIECGVSAIVINVI
Ga0184624_105095701	3300018073	Groundwater Sediment	SCSVTAIAAATLLQREIHATAIDSNVFNGYSGVNPKKIPIADPRAIECGVSAIVINVM
Ga0066667_108293012	3300018433	Grasslands Soil	AILLQRQIHATAIESKVLSGYSGVKPKKIPIADPRAIECGVSAIVTNVM
Ga0066667_108378472	3300018433	Grasslands Soil	CSVTAIAAAILLQRQTHATAIDNNVFSGYSGVNPKKIPIADPSAIECGVSAIAIKVM
Ga0066662_128488581	3300018468	Grasslands Soil	AIAAAILLQRQIHATAIESKVLSGYSGVKPKKIPIADPSAIECGVSAIVTNVM
Ga0193704_10422402	3300019867	Soil	IAAATLLQRKTHATAIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIVINVM
Ga0193705_10867831	3300019869	Soil	LQRKTHATAIDSNVFTGYSGVNPKKIPIADPKAIECGVSAIAINVM
Ga0193727_10549911	3300019886	Soil	LQRKIHATAIDSNVFTGYSGVNPKKIPIADPKAIECGVSAIVINVI
Ga0193692_10455841	3300020000	Soil	WSVTAIAAATLLHRQTHATAIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIAINVM
Ga0193697_10539781	3300020005	Soil	TAIAAAILLQRKIHATAIDSNVFTGYSGVNPKKIPIADPKAIECGVSAIVINVM
Ga0193735_10409532	3300020006	Soil	SCSVTAIAAAILLQRQTHATAIDNNVLSGYSGVKPKKIPIADPRAMECGVSAIAINVM
Ga0210381_100306963	3300021078	Groundwater Sediment	TLLQRKTHATAIDSNVFSGYSGVNPKKIPIADPKAVECGVSAIVINVM
Ga0193719_103510381	3300021344	Soil	AILLHRQAHATAIDNNVLSGYSGVKPKKIPIADPSAMECGVSAIAINVM
Ga0126371_100328514	3300021560	Tropical Forest Soil	MAAAILLQREIHATAIDNSVFSGYSGVKPKKIPIAEPSAMECGVSAIVISVM
Ga0224452_12194161	3300022534	Groundwater Sediment	RTSCSVTAIAAAILLQRKIHATAIDSNVFTGYSGVNPKKIPIADPKAIECGVSAIVINVI
Ga0222623_102025462	3300022694	Groundwater Sediment	LQRKIHATAIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIVINVM
Ga0137417_11358111	3300024330	Vadose Zone Soil	RHARSLRSIAAAILLHRHAHAAAMESNVFMLQSGVKPKKIPMAEPSAIECGVSAIAISVM
Ga0207666_10621772	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	IPAVGNALGIDITYSATGSGAGIAQITTSCNVTAIAAATLLQRQIHATAIDSSVFRGYNGVKPKKIPIAEPRAIECGVSAIAIKVM
Ga0207644_109022422	3300025931	Switchgrass Rhizosphere	MSCKVTAIAAAILLHLKIHATAMESSVFRLQSGVNPKKIPMADPRAMECGVSAIVINVI
Ga0207690_111128862	3300025932	Corn Rhizosphere	AAATLLQRKTHATTIDSNVFSGYSGVKPKKIPIADPKAIECGVSAIVINVM
Ga0207678_105295532	3300026067	Corn Rhizosphere	DVDLWWLTLIAGIAQIRTSCSVTAIAAAILLQRKTHATAIDSNVFTGYSGVNPKKIPIADPRAIECGVSAIVINVI
Ga0207648_107202551	3300026089	Miscanthus Rhizosphere	IKTSCSVTAIAAAILLQRKTHATTIDSNVFSGYSGLNPKKIPIAEPKAIECGVSAIVINV
Ga0209239_12274662	3300026310	Grasslands Soil	VTAIAAAILLQRQIHATAIDNNVLSGYSGVKPKKIPIADPRAMECGVSAIAINVM
Ga0209155_11180751	3300026316	Soil	MAQIITSCSVTAMAAAILLQRHTQATAIDKSVFSGYNGVKPKKTPIADPSAIECGVSAIAINVM
Ga0209470_11420562	3300026324	Soil	CSVTAIAAATLLQRKTHATAIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIVINVM
Ga0209470_12121861	3300026324	Soil	AAILLQRQIHATAIDNNVLSGYSGVKPKKIPMADPRAIECGVSAIAIRVM
Ga0209152_101773082	3300026325	Soil	KIRTSCTVTAIAAAILLHRHTHATAMERSVFKLQSGVNPKKIPIAEPSAIECGVSAIVINVM
Ga0257177_10596892	3300026480	Soil	TAIAAATLLHRHTHATAIESNVFKLQSGVNPKKIPIADPSAIECGVSAIVTSVIW
Ga0257165_11137831	3300026507	Soil	RHTHATAMERSVFKLQSGVNPKKIPIAEPSAIECGVSAIVINVM
Ga0209690_11537862	3300026524	Soil	SVTAIAAAILLQRETQATPIDNKVFSGYSGVNPKKIPMAEPRAIECGVSAIAINVM
Ga0209806_10103031	3300026529	Soil	MSCKVTAIAAAILLDLNTHATPIDSSVFMVHRGVNPKKIPMAEPRAIEWGVSAIVISVM
Ga0209376_11320681	3300026540	Soil	TVTAIAAAILLHRHIHATAMERSVFKLQSGVNPKKIPIAEPSAIECGVSAIVINVM
Ga0209590_103034821	3300027882	Vadose Zone Soil	GMAQIITSCSVTAMAAAILLQRHTQATKIDKSVFSGYSGVKPKKTPIADPSAIECGVSAIAINVM
Ga0307299_102475591	3300028793	Soil	IAAATLLQRKTHATAIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIAINVM
Ga0307287_100817112	3300028796	Soil	MTSCNVTAIAAAILLQRKIQATAIDNNVFNGYSGVKPKKIPMAEPSAMECGVSAIVINVM
Ga0307312_111321162	3300028828	Soil	TSCSVTAIAAATLLQRKTHATAIDSNVFSGYSGVNPKKIPIADPKAIECGVSAIAINVM
Ga0075377_117976311	3300030844	Soil	VTAIAAAILLQRKIHATAIDNNVFSGYSGVNPKKIPIADPRAIECGVSAIVINVK
Ga0170820_120999541	3300031446	Forest Soil	MSCKVTAIAAAILLDLNIHATPMESSVFKLQSGVNPKKIPMAEPRAIEW
Ga0306918_107113861	3300031744	Soil	ILLQRQIHATAIDSNVFRGYSGVNPKKIPMAEPRAIECGVSVIAINVM
Ga0310907_105355261	3300031847	Soil	AIAAAILLQRKIHATTIDSNVFSGYSGVNPKKIPIADPRAIECGVSTIVINVM
Ga0310912_106438061	3300031941	Soil	IAAATLLQRQIHATAIESRVFSGYNGVKPKKIPIAEPRAIECGVSAIAIKVM
Ga0310912_114184901	3300031941	Soil	ATLLQRQIHATAIDSSVFRGYNGVKPKKIPIAEPRAIECGVSTIAIKVM
Ga0310916_109166672	3300031942	Soil	AATLLQRQIHATAIDSSVFRGYNGVKPKKIPIAEPRAIECGVSTIAIKVM
Ga0310889_103390922	3300032179	Soil	GIAQIRTSCSVTAIAAAILLQRKIHATTIDSNVFSGYSGVNPKKIPIADPRAIEFGVSAIVINVM
Ga0307472_1004810052	3300032205	Hardwood Forest Soil	MAQIITSCSVTAIAAAILLQRQTQATAIDSNVLSGYNGVKPKKIPSADPSAMECGVSAIAINVM
Ga0306920_1004826681	3300032261	Soil	SCNVTAIAAATLLQRQIHATAIDSSVFRGYNGVKPKKIPIAEPRAIECGVSAIAINVM
Ga0306920_1012748472	3300032261	Soil	SCNVTAIAAATLLQRQIHATAIDSSVFRGYNGVKPKKIPIAEPRAIECGVSAIAIKVM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082289

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences