Metagenome Family F082275

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082275
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	44 residues
Representative Sequence	MHAAVLASNFYSVLAISVLFLHALFILWVVFGALLTRSRPILR
Number of Associated Samples	94
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	30.97 %
% of genes near scaffold ends (potentially truncated)	97.35 %
% of genes from short scaffolds (< 2000 bps)	90.27 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.531 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment (12.389 % of family members)
Environment Ontology (ENVO)	Unclassified (23.009 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.673 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.11% β-sheet: 0.00% Coil/Unstructured: 47.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00817	IMS	29.20
PF11798	IMS_HHH	6.19
PF11799	IMS_C	6.19
PF10861	DUF2784	3.54
PF00583	Acetyltransf_1	3.54
PF13532	2OG-FeII_Oxy_2	2.65
PF00903	Glyoxalase	1.77
PF00588	SpoU_methylase	1.77
PF11154	DUF2934	1.77
PF03916	NrfD	0.88
PF04945	YHS	0.88
PF06762	LMF1	0.88
PF00916	Sulfate_transp	0.88
PF02518	HATPase_c	0.88
PF03682	UPF0158	0.88
PF03928	HbpS-like	0.88
PF00950	ABC-3	0.88
PF12833	HTH_18	0.88
PF13495	Phage_int_SAM_4	0.88
PF02195	ParBc	0.88
PF09335	SNARE_assoc	0.88
PF04986	Y2_Tnp	0.88
PF13466	STAS_2	0.88
PF10677	DUF2490	0.88
PF06439	3keto-disac_hyd	0.88
PF00962	A_deaminase	0.88
PF03795	YCII	0.88
PF00196	GerE	0.88
PF08843	AbiEii	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	29.20
COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain	Translation, ribosomal structure and biogenesis [J]	1.77
COG0565	tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase	Translation, ribosomal structure and biogenesis [J]	1.77
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	1.77
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.88
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	0.88
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.88
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	0.88
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.88
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	0.88
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.88
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.88
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.88
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.53 %
Unclassified	root	N/A	19.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.53 %
Unclassified	root	N/A	19.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.53 %
Unclassified	root	N/A	19.47 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.32 %
Unclassified	root	N/A	19.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.54 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.77 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.47 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.58 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.54 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %
uncultured bacterium 162	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 162	0.88 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.47 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.58 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.54 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %
uncultured bacterium 162	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 162	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.47 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.54 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
uncultured bacterium 162	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 162	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.47 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.54 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1.77 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.88 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.88 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
uncultured bacterium 162	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 162	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.47 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.54 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1.77 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.88 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.88 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
uncultured bacterium 162	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 162	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100820619	All Organisms → cellular organisms → Bacteria	8574	Open in IMG/M
3300000955\|JGI1027J12803_106114922	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300001154\|JGI12636J13339_1012342	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300003218\|JGI26339J46600_10017385	All Organisms → cellular organisms → Bacteria	2088	Open in IMG/M
3300005172\|Ga0066683_10207941	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300005179\|Ga0066684_10940605	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300005332\|Ga0066388_104388058	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300005450\|Ga0066682_10022534	All Organisms → cellular organisms → Bacteria → Acidobacteria	3588	Open in IMG/M
3300005537\|Ga0070730_10899936	Not Available	554	Open in IMG/M
3300005542\|Ga0070732_10308497	Not Available	950	Open in IMG/M
3300005557\|Ga0066704_10815397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300005598\|Ga0066706_10623343	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300005602\|Ga0070762_11014710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300005764\|Ga0066903_106055983	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300005764\|Ga0066903_107192293	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300005834\|Ga0068851_10059781	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300006854\|Ga0075425_103013131	Not Available	515	Open in IMG/M
3300007076\|Ga0075435_101699324	Not Available	554	Open in IMG/M
3300009012\|Ga0066710_101331380	All Organisms → cellular organisms → Bacteria → Acidobacteria	1114	Open in IMG/M
3300009012\|Ga0066710_101510098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1036	Open in IMG/M
3300009029\|Ga0066793_10665602	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300009088\|Ga0099830_10900236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300009143\|Ga0099792_11146244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300009632\|Ga0116102_1133993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300009641\|Ga0116120_1096968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300010048\|Ga0126373_10071055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3145	Open in IMG/M
3300010048\|Ga0126373_10627095	Not Available	1129	Open in IMG/M
3300010048\|Ga0126373_11373278	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300010335\|Ga0134063_10267753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300010335\|Ga0134063_10658579	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300010339\|Ga0074046_10684155	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300010376\|Ga0126381_101203677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095	Open in IMG/M
3300010376\|Ga0126381_103918992	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300012096\|Ga0137389_10204670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1645	Open in IMG/M
3300012096\|Ga0137389_10627200	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300012201\|Ga0137365_10501942	All Organisms → cellular organisms → Bacteria → Acidobacteria	892	Open in IMG/M
3300012202\|Ga0137363_11562832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300012211\|Ga0137377_10504431	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300012971\|Ga0126369_12949309	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300014150\|Ga0134081_10206293	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300014494\|Ga0182017_10060960	All Organisms → cellular organisms → Bacteria	2502	Open in IMG/M
3300016270\|Ga0182036_10089442	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300016294\|Ga0182041_11869789	Not Available	557	Open in IMG/M
3300016294\|Ga0182041_12021335	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300016341\|Ga0182035_11592956	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300016422\|Ga0182039_10712011	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300016422\|Ga0182039_11309169	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300017823\|Ga0187818_10063174	Not Available	1594	Open in IMG/M
3300017823\|Ga0187818_10200690	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300017928\|Ga0187806_1254126	Not Available	609	Open in IMG/M
3300017932\|Ga0187814_10254552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300017934\|Ga0187803_10425600	Not Available	540	Open in IMG/M
3300017942\|Ga0187808_10485664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300017946\|Ga0187879_10573116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300017955\|Ga0187817_11111981	Not Available	507	Open in IMG/M
3300017995\|Ga0187816_10130589	Not Available	1083	Open in IMG/M
3300017995\|Ga0187816_10236614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	796	Open in IMG/M
3300017995\|Ga0187816_10376155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	629	Open in IMG/M
3300017995\|Ga0187816_10458044	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300018001\|Ga0187815_10106364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1184	Open in IMG/M
3300018003\|Ga0187876_1242627	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300018006\|Ga0187804_10322193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300018007\|Ga0187805_10433193	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300018088\|Ga0187771_10892513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	754	Open in IMG/M
3300018433\|Ga0066667_10731608	Not Available	833	Open in IMG/M
3300018482\|Ga0066669_10774829	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300020170\|Ga0179594_10045304	All Organisms → cellular organisms → Bacteria	1467	Open in IMG/M
3300020583\|Ga0210401_10829730	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300021168\|Ga0210406_10400478	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300021479\|Ga0210410_10269745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1527	Open in IMG/M
3300021560\|Ga0126371_10799427	Not Available	1089	Open in IMG/M
3300024330\|Ga0137417_1219288	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	611	Open in IMG/M
3300025501\|Ga0208563_1087698	Not Available	611	Open in IMG/M
3300025509\|Ga0208848_1041980	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300025910\|Ga0207684_10460163	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300025916\|Ga0207663_10395683	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300026528\|Ga0209378_1073437	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300026542\|Ga0209805_1150919	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300026548\|Ga0209161_10041830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3066	Open in IMG/M
3300027050\|Ga0209325_1022514	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300027376\|Ga0209004_1044329	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300027846\|Ga0209180_10715680	Not Available	543	Open in IMG/M
3300027862\|Ga0209701_10652191	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300027875\|Ga0209283_10856836	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300028017\|Ga0265356_1035674	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300029913\|Ga0311362_10265552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1843	Open in IMG/M
3300030494\|Ga0310037_10145596	Not Available	1077	Open in IMG/M
3300031231\|Ga0170824_107457439	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031545\|Ga0318541_10346456	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300031681\|Ga0318572_10477787	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300031708\|Ga0310686_107204656	All Organisms → cellular organisms → Bacteria → Acidobacteria	4042	Open in IMG/M
3300031708\|Ga0310686_110334038	All Organisms → cellular organisms → Bacteria	2553	Open in IMG/M
3300031708\|Ga0310686_115143391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300031781\|Ga0318547_10823296	Not Available	579	Open in IMG/M
3300031820\|Ga0307473_10481627	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300031823\|Ga0307478_10613291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	910	Open in IMG/M
3300031823\|Ga0307478_11600211	Not Available	538	Open in IMG/M
3300031845\|Ga0318511_10630733	Not Available	501	Open in IMG/M
3300031910\|Ga0306923_11175254	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300031945\|Ga0310913_10618930	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300031962\|Ga0307479_10103822	All Organisms → cellular organisms → Bacteria → Acidobacteria	2764	Open in IMG/M
3300031962\|Ga0307479_11530608	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300031962\|Ga0307479_12167935	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031962\|Ga0307479_12168126	Not Available	503	Open in IMG/M
3300032025\|Ga0318507_10522899	Not Available	516	Open in IMG/M
3300032039\|Ga0318559_10554043	Not Available	536	Open in IMG/M
3300032174\|Ga0307470_10472751	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300032180\|Ga0307471_102402408	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300032893\|Ga0335069_10006932	All Organisms → cellular organisms → Bacteria	16414	Open in IMG/M
3300032895\|Ga0335074_11171572	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 162	652	Open in IMG/M
3300033158\|Ga0335077_10546627	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300033402\|Ga0326728_10744537	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300033755\|Ga0371489_0427489	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.46%
Host-Associated	Host-Associated	3.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.76%
Aquatic	Environmental → Aquatic	17.70%
Plants	Host-Associated → Plants	3.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.11%
Freshwater	Environmental → Aquatic → Freshwater	17.70%
Peat	Environmental → Terrestrial → Peat	2.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.95%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	17.70%
Loam	Environmental → Terrestrial → Soil → Loam	7.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	12.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	12.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.19%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1008206191	3300000364	Soil	MQAASSLYSSFATLVLFLHALFIVWVVFGAWATRSRPVLRWLHIVSLVWGILTEL
JGI1027J12803_1061149222	3300000955	Soil	LMMHAAVLAQNFYSALAICVLLLHALYILWVVFGALLTRSR
JGI12636J13339_10123421	3300001154	Forest Soil	MHAAVLVSSLYSALAAAVLFLHALFILWVVFGALLTR
JGI26339J46600_100173853	3300003218	Bog Forest Soil	MQAAVLAPNFYSALAIVVLFLHALFILWVVFGALLPRSRPILRWLHVGSLIWES*
Ga0066683_102079413	3300005172	Soil	MVAVVLTTDTYSALATSVLVVHGLFILWVIFGAFLARSRPILRWLHIA
Ga0066684_109406051	3300005179	Soil	MDAVLLASNFYSALATAVLFLHGLFILWVIFGALLVRSRPILR
Ga0066388_1043880581	3300005332	Tropical Forest Soil	MRPVVAGGFYSVLATFVLVTHALFIFWVVFGAVVARSRPSLRRLHIASL
Ga0066682_100225346	3300005450	Soil	MGVNHFFSALAISVLFLHALFILWVIFGTLLTRSRPILRWLHIVSLVW
Ga0070730_108999362	3300005537	Surface Soil	MHTSPNLYSALATAVLFVHALFIVWVVFGAVVTRSRP
Ga0070732_103084971	3300005542	Surface Soil	MFAALVVSNFYSGLATAVLFLHGLFIFWVIFGALL
Ga0066704_108153971	3300005557	Soil	MRAAVMANFYSGLAVCILFLHALFILFFGALLTRSRPVLRWLHI
Ga0066706_106233431	3300005598	Soil	MFTAAIAPNVYSGLAACVLFLHMLFILWVVFGALLTVSRPILRWLHIV
Ga0070762_110147102	3300005602	Soil	MSAAVLVVNVYSGLAVCVLLLHALFIVWVVFGALFTRSR
Ga0066903_1060559832	3300005764	Tropical Forest Soil	MHAAPLYYALATAVLFLHALFIVWVVSGALVTRSRPVL
Ga0066903_1071922931	3300005764	Tropical Forest Soil	MHLAIRIPGVYSALAVAVLVVHALFIVWVVFGAFIARSRPWLQWLHIASL
Ga0068851_100597814	3300005834	Corn Rhizosphere	MQADPSLYSALAMFVLLVHALFILWIVFGVVLTRSRPVLRSLHIASLVWGVL
Ga0075425_1030131312	3300006854	Populus Rhizosphere	MHTAPNLYSALATAVLFLHALFIVWVVFGAVVTRSRPILR
Ga0075435_1016993241	3300007076	Populus Rhizosphere	VHTAPNLSSALATAVLFLHALFIVWVAFGAVVTRSRR
Ga0066710_1013313801	3300009012	Grasslands Soil	MVAVVLTTDTYSALATSVLVVHGLFILWVIFGAYLARSRPILRWLHI
Ga0066710_1015100981	3300009012	Grasslands Soil	MHARSFYSLLAVTVLIVHALFILWVVFGAFVTRSRPILR
Ga0066793_106656021	3300009029	Prmafrost Soil	VHTAVLASNFYFALAISVLFLHALFILWVVFGALLTRSRPILRWLHVCS
Ga0099830_109002362	3300009088	Vadose Zone Soil	MHAASALVASDFYSALATVILLLHALFILWVIFGTLLT
Ga0099792_111462441	3300009143	Vadose Zone Soil	MHAAVLASNFYSVLAISVLFLHVLFILWVVFGALLTRSRPILRWLHIA
Ga0116102_11339931	3300009632	Peatland	MRAVVSTHGVYAVLAVFVLFVHALFILWVVFGALLARSRPILRWLHIG
Ga0116120_10969681	3300009641	Peatland	MHAASAFVASDFYSALATAVLFLHAMFILWVVFGALLT
Ga0126373_100710554	3300010048	Tropical Forest Soil	MYAVVPTSNFYSVLATAVLFLHALFIVWVIFGALLTRSRPILRWLHI
Ga0126373_106270951	3300010048	Tropical Forest Soil	MYAVLLASNFYSVLATAVLFLHALFIVWVIFGALLTRSRPILRWLHI
Ga0126373_113732781	3300010048	Tropical Forest Soil	MHVAPNLYSALATVVLFLHALFIMWVVFGAVLTRS
Ga0134063_102677531	3300010335	Grasslands Soil	MHARSFYSLLAVTVLIVHALFILWVVFGAFVTRSRPILRWLHVGSLI
Ga0134063_106585791	3300010335	Grasslands Soil	MYAVLLASNFYSALATAVLFLHGLFILWVIFGALLVRGRPMLRWLHIAS
Ga0074046_106841551	3300010339	Bog Forest Soil	MHAVVLAPNFYSALAVSVLLLHALYILWVVFGALLTRSRPILRW
Ga0126381_1012036771	3300010376	Tropical Forest Soil	MYAVLLASNFYSVLATAVLFLHALFIVWVIFGALLTRSRPILRWLHIASL
Ga0126381_1039189922	3300010376	Tropical Forest Soil	VPANIYSALATAVLFVHALFIAWVVLGVLFARSRPVLRWLHIISLIWG
Ga0137389_102046701	3300012096	Vadose Zone Soil	MYAVLLASNFYSALATAVLFLHGLFILWVIFGALLVRSRPILRWLHIA
Ga0137389_106272001	3300012096	Vadose Zone Soil	MHAAVLASSLYSALAISILFLHALFILWVVFGALLTRS
Ga0137365_105019421	3300012201	Vadose Zone Soil	MFAVVLTRDTYSALATSVLAVHGLFIVWVIFGAFLARSRPILRRL
Ga0137363_115628321	3300012202	Vadose Zone Soil	MFTAAIAPNVYSGLAACVLFLHMLFILWVVFGALLTLSRPVLRWLHI
Ga0137377_105044311	3300012211	Vadose Zone Soil	MANFYSGLAVCMLFLHALFILWVVFGALLIRSRPVLRWL
Ga0126369_129493092	3300012971	Tropical Forest Soil	MAVIVSGEFYKALATLVLFVHILFIVWVVLGALLTRSRP
Ga0134081_102062931	3300014150	Grasslands Soil	MDAVLLASNFYSALATAVLFLHGLFILWVIFGALLVRSRPILRWLHIAS
Ga0182017_100609601	3300014494	Fen	MMHAAVLAFNFYSALATSVLFLHALFILWVVFGALLTRSRPI
Ga0182036_100894424	3300016270	Soil	MHAAILVSNIYSALAIFVLFLHTLFIVWVIFGALLTRS
Ga0182041_118697892	3300016294	Soil	MHAAILVSNIYSALAIFVLFLHTLFIVLVIFGALLTRSHPILRWLH
Ga0182041_120213352	3300016294	Soil	MHAVVIASNAYATLAISVLFLHAPFILWVVFGAFLTRSRPILRWLHI
Ga0182035_115929561	3300016341	Soil	MHAVILASSIYSALAISVLVLHALFILLVIFGALPTRQRLMLRWLHI
Ga0182039_107120111	3300016422	Soil	MHAAVLVSNIYSALAIFVLFLHTRFVLWVIFGALLTRSQPILRW
Ga0182039_113091691	3300016422	Soil	VFAIILGSNIYAGLAAGVLFLHALFVLWVVAGALLTRSRPVLRWVHI
Ga0187818_100631741	3300017823	Freshwater Sediment	MHAASSFYSALAVSVLFVHALFILWVIFGALLTRSRPILRWLHIAS
Ga0187818_102006901	3300017823	Freshwater Sediment	MQAASSLYSALAILVLLLHALFILWVVLGALVTRSRPVLRWLHIASL
Ga0187806_12541261	3300017928	Freshwater Sediment	MHAASGFVASDFYSALATAILFLHALFILWVIFGALLTRSRPLLRW
Ga0187814_102545521	3300017932	Freshwater Sediment	MHAASAFVASDFYSALATAVLFLHALFILWVVFGAL
Ga0187803_104256001	3300017934	Freshwater Sediment	MQAASSLYSALAILVLLLHALFILWVVFGALVTRS
Ga0187808_104856641	3300017942	Freshwater Sediment	MHAASAFVASGFYSALAIAVLFLHALFILWLIFGALLTRSRPLLRGLHIASLVWGILI
Ga0187879_105731161	3300017946	Peatland	MQATLVAANFCSGLAVCVLFLHALFIVWVVFGAVLTRSRPILRWLHMVS
Ga0187817_111119811	3300017955	Freshwater Sediment	MHAAVLASSFYSELAIFVLFLHALFILWVVFGALLTRSRPILR
Ga0187816_101305891	3300017995	Freshwater Sediment	MHAAVVASNFYSALATCVLLLHALFILWVIFGALL
Ga0187816_102366141	3300017995	Freshwater Sediment	MHAAVLASSFYSALAISVLFLHALFILWVVLGSLLTRSRPILRWLHVGSLVWG
Ga0187816_103761552	3300017995	Freshwater Sediment	MHADSTFGASGFYSALATAILFLHALFILWVIFGALLTRSRPLLRWLHIAS
Ga0187816_104580441	3300017995	Freshwater Sediment	MQAAVLAPNFYSALAIVVLFLHALFILWVVFGALLTRLRPVL
Ga0187815_101063643	3300018001	Freshwater Sediment	MHAAVLASSFYSALATSVLFLHALFTLWVVSGALLTRSRPILRWLHIASLVWGILTE
Ga0187876_12426272	3300018003	Peatland	VATLALNFYSVLAISVLFLHALFILWVVFGALLTRSRPI
Ga0187804_103221931	3300018006	Freshwater Sediment	MHAASVFVASDFYSALATAILLLHALFILWVIFGAL
Ga0187805_104331932	3300018007	Freshwater Sediment	MHAAVVASNFYSALATCVLFLHALFILWVIFGALLTRSGHIL
Ga0187771_108925132	3300018088	Tropical Peatland	MHVAPSIYAALATFVLFLHALFIVWVAFGAFLTRSR
Ga0066667_107316082	3300018433	Grasslands Soil	MTANSSGIYIELADVVLFLHAVFIAWMSFGALLTRSHPLLRRLHIASLIWG
Ga0066669_107748292	3300018482	Grasslands Soil	VHAAFAVIGVYSHLAIVVLILHALFILWVVFGALLTGHRPILRRLHIAS
Ga0179594_100453041	3300020170	Vadose Zone Soil	PGTGPFAAVARFVLSLHALFILWVVFGALLTRFRPILRWLHIASLI
Ga0210401_108297302	3300020583	Soil	MHTAPNLYSALATAVLFLHALFIVWVVFGAVFTCSR
Ga0210406_104004782	3300021168	Soil	MHVTSNLYSALTILVLLLHALFILWVVFGALVTRS
Ga0210410_102697451	3300021479	Soil	MHAATAFGASDFCSALATAILLLHALFILWVIFGACGRHTET
Ga0126371_107994271	3300021560	Tropical Forest Soil	MHAVLLASHFYSVLATAVLFLHALFIVWVIFGALLTR
Ga0137417_12192882	3300024330	Vadose Zone Soil	PFAAVARFVLLLHALFILWVVFGALLTRFRPILRWLHIASLI
Ga0208563_10876981	3300025501	Peatland	MRAAVFASDFYSALATAVLFLHALFILWVVFGAWLTRSRPVLR
Ga0208848_10419801	3300025509	Arctic Peat Soil	MQAVVLAPTFYSALAVSVLLLHALYILWVVFGALLTRS
Ga0207684_104601631	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MHAAFLASDFYSALATAVLFLHALFILWVVFGAFLAHSRLILRWLLGSF
Ga0207663_103956832	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MHAGPNLYSALATAVLFLHALFIVWVVFGAVLTRFRPIFRGLHII
Ga0209378_10734371	3300026528	Soil	MHAASSFHSALAIFVLFLHALFILWVVFGALLTRSRTVLRWLHIASLVWGILT
Ga0209805_11509192	3300026542	Soil	MCTVLLASNFYAALAIAVLFLHGLFILWVIFGAFLVRARPMFRW
Ga0209161_100418306	3300026548	Soil	MHARSFYSLLAVTVLIVHALFILWVVFGAFVTRSRPILRW
Ga0209325_10225141	3300027050	Forest Soil	MGVVLASNLYSALASVVLILHALFIVWVVFGALLTRGRLTLRWLHVV
Ga0209004_10443292	3300027376	Forest Soil	MQAASSLDSALAILVLFLHALFILWVIFGAFLARSRP
Ga0209180_107156802	3300027846	Vadose Zone Soil	MYAVLLASNFYSALATAVLFLHGLFIFWVIFGTLLVR
Ga0209701_106521912	3300027862	Vadose Zone Soil	MHAAVLGPTFYSALAVCVLFLHALFILWVVFGALLTRSRPILRWMH
Ga0209283_108568362	3300027875	Vadose Zone Soil	MHAAFVASNFYSALATAVLFLHALFILWVVFGAFLAHSRLILRWLLGS
Ga0265356_10356742	3300028017	Rhizosphere	MQAASGLYSSVAILVLFLHALFILWVVFGALVTPSQPVLRWLHIASLVWGG
Ga0311362_102655523	3300029913	Bog	MRACVLASNIYSALAISVLFLHALFILWVVFGALLTHSRPILRWLHVGSLV
Ga0310037_101455961	3300030494	Peatlands Soil	MHAAVVASNFYSALATCVLFLHALFILWVIFGALLTRSGQILRWLHI
Ga0170824_1074574391	3300031231	Forest Soil	MHAAVLASNFYSALAISVLLLHALYILWVVFGALLTRSRPMLR
Ga0318541_103464561	3300031545	Soil	MHAAILVSNIYSALAIFVLFLHTLFIVWVIFGALLTRSHPILRGLHISSV
Ga0318572_104777872	3300031681	Soil	MHAAVLVSNIYSALAIFVLFLHTLFIVWVIFGALLTRSRPVLRWLH
Ga0310686_1072046566	3300031708	Soil	MLGMQAASTFYSALAIFVLFLHALFILWVVFGALLTRSRPVLRWLHI
Ga0310686_1103340385	3300031708	Soil	MPAASTFYSALAIFVLFLHALFILWVVFGALLTRSRPVLRWLHI
Ga0310686_1151433911	3300031708	Soil	MHAASAFVASDFYSALATAVLFLHALFILWVVFGALLTRSRPVL
Ga0318547_108232962	3300031781	Soil	MHAAVLVSNIYSALAIFVLFLHTLFIVWVIFGALLTRSRPVLRWLHISSLVWGVLT
Ga0307473_104816272	3300031820	Hardwood Forest Soil	MHAAVLASSLYSALAISVLLLHALFILWVVFGALVTR
Ga0307478_106132911	3300031823	Hardwood Forest Soil	MHVAPNVYSALASAVLFLHALFIVWVVFGALLTRSRPILRWL
Ga0307478_116002111	3300031823	Hardwood Forest Soil	MDTTPNLYSALATAVLFLHALFIVWVVFGAVFTRSRPILRWLH
Ga0318511_106307331	3300031845	Soil	MHAAVLVSNIYSALAIFVLFLHTLFIVWVIFGALLTRSRPVLRWLHI
Ga0306923_111752541	3300031910	Soil	MHAVILASSIYSALAISVLVLHALFILLVIFGALPTRQRLMLRWLHISCLVWRILRDLLR
Ga0310913_106189302	3300031945	Soil	MHAAILVSNIYSALAIFVLFLHTLFIVWVIFGALLTRSHP
Ga0307479_101038221	3300031962	Hardwood Forest Soil	MYAVLLAPNFYSALATTVLFLHGLFIFWVIFGALLVRSR
Ga0307479_115306082	3300031962	Hardwood Forest Soil	MQAASTLYSGLATFVLFLHALFILWVVFGALVTHS
Ga0307479_121679351	3300031962	Hardwood Forest Soil	MQAASSLYSSFATLVLFPHALFIVWVVFGSWVTGLRPVLRWQHVVSLVW
Ga0307479_121681262	3300031962	Hardwood Forest Soil	MQAALSLYSALAIFVLCLHALFILWVVFGAFLTRWRSVLRWLHIASLV
Ga0318507_105228991	3300032025	Soil	MHAAVLVSNIYSALAIFVLFLHTLFIVWVIFGALLTRSRPVLR
Ga0318559_105540431	3300032039	Soil	MHAAVLVSNIYSALAIFVLFLHTLFIVWVIFGALLTRSHPILRWLHI
Ga0307470_104727512	3300032174	Hardwood Forest Soil	MHTAPNLYSDLATAVLFLHALFIVWVVFGAVFTTSRPIQRWLHIVSL
Ga0307471_1024024082	3300032180	Hardwood Forest Soil	MHAASAFVVSGFYSALAIAVLLHALFILWVIFGALLTRSRPVLRWLHIG
Ga0335069_1000693212	3300032893	Soil	MHAAVLASNFYSVLAISVLFLHALFILWVVFGALLTRSRPILR
Ga0335074_111715722	3300032895	Soil	MHVAVIASNFYSGLAASVLCLHALFILWVIFGALLTRSRPLLRWLHIA
Ga0335077_105466272	3300033158	Soil	MYAGLLASNFYSALATAVLFLHGLFILWVIFGALLVRSRPLL
Ga0326728_107445373	3300033402	Peat Soil	MHVATLALNFYSVLAISVLFLHALFILWVVFGALLTRSRPILRWLHVGSL
Ga0371489_0427489_477_602	3300033755	Peat Soil	MHAVVIASNIYSALAISVLFLHALFIPWVVFGALLTRSRPIL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F082275

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences