Metagenome / Metatranscriptome Family F082269

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082269
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	56 residues
Representative Sequence	MKCDICNQHVENSEELQKHMEQAHPTGVADNLERPDLLGDTPEESAAVEAPLPTH
Number of Associated Samples	73
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.19 %
% of genes near scaffold ends (potentially truncated)	17.70 %
% of genes from short scaffolds (< 2000 bps)	64.60 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.611 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost (21.239 % of family members)
Environment Ontology (ENVO)	Unclassified (38.938 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (79.646 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.25% β-sheet: 2.41% Coil/Unstructured: 84.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF12697	Abhydrolase_6	5.31
PF09335	SNARE_assoc	2.65
PF13673	Acetyltransf_10	2.65
PF00561	Abhydrolase_1	2.65
PF10091	Glycoamylase	1.77
PF08386	Abhydrolase_4	1.77
PF07905	PucR	1.77
PF12728	HTH_17	1.77
PF00440	TetR_N	1.77
PF13439	Glyco_transf_4	1.77
PF10609	ParA	1.77
PF07784	DUF1622	1.77
PF03976	PPK2	1.77
PF02566	OsmC	0.88
PF12833	HTH_18	0.88
PF00982	Glyco_transf_20	0.88
PF08327	AHSA1	0.88
PF00356	LacI	0.88
PF13377	Peripla_BP_3	0.88
PF00005	ABC_tran	0.88
PF12679	ABC2_membrane_2	0.88
PF12804	NTP_transf_3	0.88
PF11964	SpoIIAA-like	0.88
PF00480	ROK	0.88
PF13683	rve_3	0.88
PF00753	Lactamase_B	0.88
PF00933	Glyco_hydro_3	0.88
PF07883	Cupin_2	0.88
PF00291	PALP	0.88
PF01734	Patatin	0.88
PF10431	ClpB_D2-small	0.88
PF14759	Reductase_C	0.88
PF07366	SnoaL	0.88
PF12695	Abhydrolase_5	0.88
PF01796	OB_aCoA_assoc	0.88
PF05532	CsbD	0.88
PF01152	Bac_globin	0.88
PF13561	adh_short_C2	0.88
PF00795	CN_hydrolase	0.88
PF00196	GerE	0.88
PF00534	Glycos_transf_1	0.88
PF00096	zf-C2H2	0.88
PF00583	Acetyltransf_1	0.88
PF08546	ApbA_C	0.88
PF04226	Transgly_assoc	0.88
PF00199	Catalase	0.88
PF05201	GlutR_N	0.88
PF13489	Methyltransf_23	0.88
PF04675	DNA_ligase_A_N	0.88
PF04055	Radical_SAM	0.88
PF01546	Peptidase_M20	0.88
PF02424	ApbE	0.88
PF00486	Trans_reg_C	0.88
PF13549	ATP-grasp_5	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2508	DNA-binding transcriptional regulator, PucR/PutR family	Transcription [K]	3.54
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	2.65
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	2.65
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	2.65
COG4828	Uncharacterized membrane protein	Function unknown [S]	1.77
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	1.77
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.77
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.88
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.88
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.88
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.88
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.88
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.88
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.88
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.88
COG0373	Glutamyl-tRNA reductase	Coenzyme transport and metabolism [H]	0.88
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.88
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.88
COG1545	Uncharacterized OB-fold protein, contains Zn-ribbon domain	General function prediction only [R]	0.88
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.88
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.88
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.87 %
Unclassified	root	N/A	12.39 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	41.59 %
Unclassified	root	N/A	12.39 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	2.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.77 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	41.59 %
Unclassified	root	N/A	12.39 %
unclassified Candidatus Dormibacteraeota	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota	2.65 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	41.59 %
Unclassified	root	N/A	12.39 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	2.65 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	41.59 %
Unclassified	root	N/A	12.39 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	2.65 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090004\|P1_DRAFT_NODE_55993_len_1356_cov_23_924778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1406	Open in IMG/M
2088090008\|P3_DRAFT_NODE_521191_len_803_cov_24_499378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	853	Open in IMG/M
2140918006\|ConsensusfromContig56099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	973	Open in IMG/M
3300000878\|AL9A1W_1295223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300000878\|AL9A1W_1378227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	817	Open in IMG/M
3300000880\|AL20A1W_1025444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1083	Open in IMG/M
3300000887\|AL16A1W_10013429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	555	Open in IMG/M
3300001086\|JGI12709J13192_1000169	All Organisms → cellular organisms → Bacteria	12119	Open in IMG/M
3300001086\|JGI12709J13192_1000889	All Organisms → cellular organisms → Bacteria	4942	Open in IMG/M
3300001086\|JGI12709J13192_1001191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4130	Open in IMG/M
3300001154\|JGI12636J13339_1010068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1462	Open in IMG/M
3300001154\|JGI12636J13339_1052629	Not Available	501	Open in IMG/M
3300001333\|A21PFW6_1066820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1394	Open in IMG/M
3300001537\|A2065W1_10028204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4114	Open in IMG/M
3300001593\|JGI12635J15846_10006605	All Organisms → cellular organisms → Bacteria	9939	Open in IMG/M
3300001593\|JGI12635J15846_10014390	All Organisms → cellular organisms → Bacteria	6593	Open in IMG/M
3300001593\|JGI12635J15846_10806174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	538	Open in IMG/M
3300002025\|smpD1_1007430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1149	Open in IMG/M
3300002028\|A17_1543706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	767	Open in IMG/M
3300002853\|draft_1002825	All Organisms → cellular organisms → Bacteria	1773	Open in IMG/M
3300004479\|Ga0062595_100246910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1153	Open in IMG/M
3300005437\|Ga0070710_10465586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	859	Open in IMG/M
3300005537\|Ga0070730_10026161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4457	Open in IMG/M
3300005545\|Ga0070695_100745268	Not Available	781	Open in IMG/M
3300005938\|Ga0066795_10001020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6121	Open in IMG/M
3300005938\|Ga0066795_10016954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2041	Open in IMG/M
3300005938\|Ga0066795_10108221	All Organisms → cellular organisms → Bacteria → Terrabacteria group	827	Open in IMG/M
3300005938\|Ga0066795_10109095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	824	Open in IMG/M
3300005947\|Ga0066794_10003754	All Organisms → cellular organisms → Bacteria	4006	Open in IMG/M
3300005947\|Ga0066794_10140331	Not Available	726	Open in IMG/M
3300005947\|Ga0066794_10239443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	545	Open in IMG/M
3300005994\|Ga0066789_10025148	All Organisms → cellular organisms → Bacteria	2638	Open in IMG/M
3300006055\|Ga0097691_1000045	All Organisms → cellular organisms → Bacteria	109850	Open in IMG/M
3300006055\|Ga0097691_1037216	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1829	Open in IMG/M
3300006057\|Ga0075026_100674626	All Organisms → cellular organisms → Bacteria → Terrabacteria group	615	Open in IMG/M
3300006059\|Ga0075017_100484092	All Organisms → cellular organisms → Bacteria → Terrabacteria group	937	Open in IMG/M
3300006864\|Ga0066797_1024659	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300006864\|Ga0066797_1099000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1021	Open in IMG/M
3300006893\|Ga0073928_10004309	All Organisms → cellular organisms → Bacteria	21229	Open in IMG/M
3300009029\|Ga0066793_10326710	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	884	Open in IMG/M
3300009029\|Ga0066793_10547892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	660	Open in IMG/M
3300009660\|Ga0105854_1360227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	521	Open in IMG/M
3300010379\|Ga0136449_100672089	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300010861\|Ga0126349_1062648	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300010880\|Ga0126350_10739492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3012	Open in IMG/M
3300011120\|Ga0150983_14319640	Not Available	531	Open in IMG/M
3300011444\|Ga0137463_1305629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	581	Open in IMG/M
3300011971\|Ga0120175_1044954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	503	Open in IMG/M
3300011996\|Ga0120156_1000859	All Organisms → cellular organisms → Bacteria	10705	Open in IMG/M
3300011996\|Ga0120156_1004059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3575	Open in IMG/M
3300011997\|Ga0120162_1033320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1410	Open in IMG/M
3300011998\|Ga0120114_1017226	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300011998\|Ga0120114_1026539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1187	Open in IMG/M
3300012004\|Ga0120134_1012513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1304	Open in IMG/M
3300012014\|Ga0120159_1031536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1823	Open in IMG/M
3300012014\|Ga0120159_1042007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1498	Open in IMG/M
3300013758\|Ga0120147_1014298	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300013763\|Ga0120179_1000001	All Organisms → cellular organisms → Bacteria	117424	Open in IMG/M
3300013763\|Ga0120179_1039663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1098	Open in IMG/M
3300013764\|Ga0120111_1003852	All Organisms → cellular organisms → Bacteria	5393	Open in IMG/M
3300013766\|Ga0120181_1008276	All Organisms → cellular organisms → Bacteria	3111	Open in IMG/M
3300014052\|Ga0120109_1009168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2168	Open in IMG/M
3300014052\|Ga0120109_1025660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1318	Open in IMG/M
3300014823\|Ga0120170_1056094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	868	Open in IMG/M
3300014829\|Ga0120104_1056112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	748	Open in IMG/M
3300015193\|Ga0167668_1012789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1891	Open in IMG/M
3300015193\|Ga0167668_1017263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1621	Open in IMG/M
3300015193\|Ga0167668_1038339	Not Available	1036	Open in IMG/M
3300019888\|Ga0193751_1103580	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300021046\|Ga0215015_10502514	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1343	Open in IMG/M
3300021178\|Ga0210408_11434571	Not Available	519	Open in IMG/M
3300021418\|Ga0193695_1002808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3123	Open in IMG/M
3300021420\|Ga0210394_10006155	All Organisms → cellular organisms → Bacteria	13095	Open in IMG/M
3300021420\|Ga0210394_10361606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1276	Open in IMG/M
3300021420\|Ga0210394_10862635	Not Available	789	Open in IMG/M
3300021432\|Ga0210384_10089859	All Organisms → cellular organisms → Bacteria	2758	Open in IMG/M
3300021432\|Ga0210384_10277399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1509	Open in IMG/M
3300021432\|Ga0210384_10582457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1006	Open in IMG/M
3300021479\|Ga0210410_10437228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1171	Open in IMG/M
3300021479\|Ga0210410_10846439	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300021479\|Ga0210410_11783875	Not Available	509	Open in IMG/M
3300022557\|Ga0212123_10000601	All Organisms → cellular organisms → Bacteria	114224	Open in IMG/M
3300022557\|Ga0212123_10033246	All Organisms → cellular organisms → Bacteria → Proteobacteria	5218	Open in IMG/M
3300025457\|Ga0208850_1031454	All Organisms → cellular organisms → Bacteria → Terrabacteria group	912	Open in IMG/M
3300025504\|Ga0208356_1000045	All Organisms → cellular organisms → Bacteria	45933	Open in IMG/M
3300025581\|Ga0208355_1029631	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1507	Open in IMG/M
3300025939\|Ga0207665_10303932	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300026223\|Ga0209840_1032405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1193	Open in IMG/M
3300026271\|Ga0209880_1015422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1939	Open in IMG/M
3300026271\|Ga0209880_1103897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	574	Open in IMG/M
3300027565\|Ga0209219_1005181	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2801	Open in IMG/M
3300027565\|Ga0209219_1054905	All Organisms → cellular organisms → Bacteria → Terrabacteria group	994	Open in IMG/M
3300027565\|Ga0209219_1057579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	969	Open in IMG/M
3300027587\|Ga0209220_1000160	All Organisms → cellular organisms → Bacteria	28885	Open in IMG/M
3300027587\|Ga0209220_1000189	All Organisms → cellular organisms → Bacteria	26238	Open in IMG/M
3300027587\|Ga0209220_1000350	All Organisms → cellular organisms → Bacteria	16793	Open in IMG/M
3300027587\|Ga0209220_1006246	All Organisms → cellular organisms → Bacteria	3182	Open in IMG/M
3300027667\|Ga0209009_1000142	All Organisms → cellular organisms → Bacteria	29143	Open in IMG/M
3300027674\|Ga0209118_1000799	All Organisms → cellular organisms → Bacteria	15942	Open in IMG/M
3300027674\|Ga0209118_1033055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1582	Open in IMG/M
3300027857\|Ga0209166_10117093	Not Available	1475	Open in IMG/M
3300028047\|Ga0209526_10037513	All Organisms → cellular organisms → Bacteria	3412	Open in IMG/M
3300028047\|Ga0209526_10636585	Not Available	679	Open in IMG/M
3300029636\|Ga0222749_10105417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1329	Open in IMG/M
3300030975\|Ga0099845_1309170	Not Available	561	Open in IMG/M
3300031670\|Ga0307374_10000061	All Organisms → cellular organisms → Bacteria	169948	Open in IMG/M
3300031670\|Ga0307374_10002976	All Organisms → cellular organisms → Bacteria	29455	Open in IMG/M
3300031670\|Ga0307374_10074907	All Organisms → cellular organisms → Bacteria	3176	Open in IMG/M
3300031670\|Ga0307374_10537561	Not Available	614	Open in IMG/M
3300031671\|Ga0307372_10033261	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5498	Open in IMG/M
3300031671\|Ga0307372_10095387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2408	Open in IMG/M
3300032160\|Ga0311301_12121826	Not Available	649	Open in IMG/M
3300032756\|Ga0315742_13435568	Not Available	511	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.69%
Aquatic	Environmental → Aquatic	5.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.69%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.65%
Sediment	Environmental → Aquatic → Sediment	2.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.98%
Loam	Environmental → Terrestrial → Soil → Loam	21.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.16%
Clay	Environmental → Terrestrial → Soil → Clay	5.31%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.65%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	30.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.58%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	14.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.62%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	5.31%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	21.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	18.58%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	11.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.73%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	5.31%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.42%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	2.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.77%
Permafrost And Active Layer Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil	1.77%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.77%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.89%
Hydrocarbon Resource Environments	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Hydrocarbon Resource Environments	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090004	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
2088090008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
2140918006	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300001086	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002025	Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_D1	Environmental	Open in IMG/M
3300002028	Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17	Environmental	Open in IMG/M
3300002853	PDIso9.ppmwps2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300011971	Permafrost microbial communities from Nunavut, Canada - A7_80cm_12M	Environmental	Open in IMG/M
3300011996	Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M	Environmental	Open in IMG/M
3300011997	Permafrost microbial communities from Nunavut, Canada - A15_80cm_18M	Environmental	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300013758	Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013766	Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300014829	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300026271	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030975	Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest - Alaskan Soil AK pilot (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P1_DRAFT_00214210	2088090004	Soil	MECDICGQNVENSEDLQKHKERAHPTGMGDKFMDNLEKPDLLGDTPQESATSEIPKATH
P3_DRAFT_00605500	2088090008	Soil	MECDICGQNVENSEDLQKHKERAHPTGMGDKSMDNLEKPDLLGDTPEESATSEIPKATH
P1_C_02089020	2140918006	Soil	MECDICGQNVENSEDLQKHKERAHPTGDGDKSMDNLEKPDLLGDTPEESAASEAPIPTH
AL9A1W_12952231	3300000878	Permafrost	MECDICGQDVENSEDLQKHKEQSHATGVVDTLERPDPIGDTPEESA
AL9A1W_13782272	3300000878	Permafrost	MKCDICGEDVENSEQLQKHMEQAHATGMGDKSVEELEQPDLLGDTPEESAASEIPKPNH*
AL20A1W_10254441	3300000880	Permafrost	DLQKHKERAHPTGMGDKSIDNVEKPDLLGDTPEESATSEMPKATH*
AL16A1W_100134291	3300000887	Permafrost	MECDICGQDVENSEDLQKHKEQSHATGVVDTPERPDPIGDTPEESAASEIPEATH*
JGI12709J13192_100016914	3300001086	Forest Soil	MNCDICGEAVENSEELQKHMERAHPTGVGDPETPDLVGDTPEESAASETRQATH*
JGI12709J13192_10008892	3300001086	Forest Soil	MECDICGQDVENSEDLQKHKEQAHVTGVGDGLERPDLVGDTPEESAASAIPTTSH*
JGI12709J13192_10011918	3300001086	Forest Soil	MECDICGQDVENSEELQKHKERAHATGVGDNLERPDLLEDAPEESAASEIPNAT*
JGI12636J13339_10100683	3300001154	Forest Soil	CDICGQSVENSEELEKHTEQAHPTGAGDNLERPDLLGDTPEQSAAVEVPQPTH*
JGI12636J13339_10526292	3300001154	Forest Soil	DICGEAVENSEELQKHMERAHPTGVGDPETPDLVGDTPEESAASETRQATH*
A21PFW6_10668201	3300001333	Permafrost	MECDICGQNVENSEDLQKHKERAHPTGMGDKSIDNVEKPDLLGDTPEESATSEMPKATH*
A2065W1_100282042	3300001537	Permafrost	MKCDVCSQEVGNSEELQKHKELAHPAGADNLEKPDLLGDTPEESAAIEVAQPTQ*
JGI12635J15846_100066054	3300001593	Forest Soil	MKCDICGQSVENSEELEKHTEQAHPTGAGDNLERPDLLGDTPEQSAAVEVPQPTH*
JGI12635J15846_100143907	3300001593	Forest Soil	MKCDICNQDVDNSEELQKHMEQAHPTSVADNLERPDMLGDTPEESAAVEGPLPTH*
JGI12635J15846_108061742	3300001593	Forest Soil	MKCDICDQHVENSEELQKHIEQAHPTGVGDDLEKPDLLGDTPEESAVVEPPLPTH*
smpD1_10074302	3300002025	Permafrost And Active Layer Soil	MECDICGQNVENSEDLQKHKERAHPTGMGDKSIDNLEKPDLLGDTPEESATSEMPKATH*
A17_15437062	3300002028	Permafrost And Active Layer Soil	MCGQNVENSEDLQKHKERTHPTGMGDKSMDNLEKPDLLGDTPEESATSEMPKATH*
draft_10028252	3300002853	Hydrocarbon Resource Environments	MDCDICGQDVENSEELQKHMEQAHPTGVGDLEKPDLVGDTPEESAASETRQATH*
Ga0062595_1002469101	3300004479	Soil	MKCDICGQGFESSEDLQKHLDGAHHTNDKLESPDLIGDTPEESAAVAIPRPTH*
Ga0070710_104655861	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VDCDICGQDVENSEELRKHMERAHPTGVGDLEKPDLLGDTPEESAASETRQPTH*
Ga0070730_100261613	3300005537	Surface Soil	MKCDVCSQEVGNSEELQKHMDLTHPAGADNLEKPDLLGDTPEESAAIEVAQPTH*
Ga0070695_1007452681	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKCDICGQGFESSEDLQKHLDGAHHTNDTLESPDLIGDTPEESAAVAIPRPTH*
Ga0066795_100010207	3300005938	Soil	MKCDICGQGVENSEELEKHREREHPTNVGDNLESPDLKGDTPEESAAAETPQPTH*
Ga0066795_100169543	3300005938	Soil	MKCDICGQAVENSEELEKHREREHPTNVGDNLESPDLMGDTPEESAGVEPPLPTH*
Ga0066795_101082211	3300005938	Soil	MKCDICGQDVENSDDLQNHKEREHPTGVGDSSADDMEKPDLLGDTPEESTASESPKATY*
Ga0066795_101090953	3300005938	Soil	ICGQDVENSEDLQKHMEQAHPTAAGDNLETPDLVGDTPDESAASEVPKATY*
Ga0066794_100037542	3300005947	Soil	MKCDICGQGVENSEELEKHREREHPTNVGDNLESPDLVGDTPEESAAAETPQPTH*
Ga0066794_101403311	3300005947	Soil	MKCDICGQDVENSEDLQKHMEQAHPTGAGDNLETPDLVGDTPDESAAS
Ga0066794_102394431	3300005947	Soil	MECDICGQDVTNSEELQKHQEQMHPTGEGDKSMDNLERPDLVGDTPEESAASETPKPTY*
Ga0066789_100251481	3300005994	Soil	MECDICGQDVKNSEELQKHRERMHPTGEGDKSMDNLEKPDLLGDTPEESAASETPKASH*
Ga0097691_1000045105	3300006055	Arctic Peat Soil	MKCDICGQAVDNSEELQKHTEREHPAGVGDNLESPDLMGDTPEESAAVEAPLPTH*
Ga0097691_10372163	3300006055	Arctic Peat Soil	MKCDICSQDVENSEDLQKHKELAHPAGVSDKSDKSMDNLEQPDLSEDSPEESPAIETPVPIH*
Ga0075026_1006746261	3300006057	Watersheds	MKCDICGQDVENSEELEKHTEQAHASGVGDNLERPDLLGDTPEESSAVEVPQPTH*
Ga0075017_1004840922	3300006059	Watersheds	MKCDICSEEFGDSKELQKHMALVHPAGEGTLESPDRIGDTLEESAAVEVAQPTH*
Ga0066797_10246592	3300006864	Soil	MKCDICGQDVENSEDLQKHMEQAHPTGAGDNLETPDLVGDTPDESAASEVPKATY*
Ga0066797_10990001	3300006864	Soil	MECDICGQDVKNSEELQKHQEQMHPTGEGDKSMDNLERPDLVGDTPEESAASETPKPTY*
Ga0073928_1000430919	3300006893	Iron-Sulfur Acid Spring	MKCDICDEHVENSEALQKHMEAAHPAGVDDLEKPDLLGDTPEESAAIEAPLPTH*
Ga0066793_103267102	3300009029	Prmafrost Soil	MECDICGQDVKNSEELQKHRERMHPTGEADKSMDNLEKPDLLGDTPEESATSEAPLPTH*
Ga0066793_105478921	3300009029	Prmafrost Soil	MECDICGEDVENSEDLQKHKERAHPTGMGDKAMGNLETPDLLGDTPEESATSEIPKATH*
Ga0105854_13602272	3300009660	Permafrost Soil	MECDICGQDVKNSEELQKHRERMHPTGEGDKSMDNLEKPDLLGDTPEESAESETPKASH*
Ga0136449_1006720893	3300010379	Peatlands Soil	MECDFCGQEMDNAEALQKHKERAHPDGLGDQSADNLETPDLSGDTPEESATRDAP
Ga0126349_10626482	3300010861	Boreal Forest Soil	MKCDLCDQHVENSEELQKHMELAHPAGAGDNLERPDLVGDTPEESAAVEAPLPTH*
Ga0126350_107394923	3300010880	Boreal Forest Soil	MKCDICGHAVENSEELQKHVEREHPTGAADNLETPDLLGDTPEESAAVDIPLPTH*
Ga0150983_143196401	3300011120	Forest Soil	VPSQDRLFGLAHRSLFEEAIMKCDICDQHVENSEELQKHMEQAHPSGAGDNLERPDLLGDTPEESAAAEPPLPTH*
Ga0137463_13056292	3300011444	Soil	MKCDICSQDVENSEELQKHMEREHASGMGDKSMDNLEKPDMLGDTSAESAAIETPLPTH*
Ga0120175_10449542	3300011971	Permafrost	AWQGDLFAKEAIMECDICGQNVENSEDLQKHKERAHPTGMGDKSIDNVEKPDLLGDTPEESATSEMPKATH*
Ga0120156_10008598	3300011996	Permafrost	MECDICGEEVENSDDLQKHKERAHATGVADNLERPDLLGDTPEESAASEIPKAT*
Ga0120156_10040592	3300011996	Permafrost	MCGQNVENSEDLQKHKERAHPTGMGDKSIDNLEKPDLLGDTPEESATSEMPKATH*
Ga0120162_10333203	3300011997	Permafrost	MECDICGQNVENSEDLQKHKERAHPTGMGDKSIDNVEKPDLLGDTPEESATSEIPTATHQRR*
Ga0120114_10172262	3300011998	Permafrost	VISSAKEAIMKCDICGEDVENSEQLQKHMEQAHATGMGDKSVEELEQPDLLGDTPEESAASEIPKPNH*
Ga0120114_10265392	3300011998	Permafrost	MECDMCGQNVENSEDLQKHKERAHPTGMGDKSIDNLEKPDLLGDTPEESATSEMPKATH*
Ga0120134_10125132	3300012004	Permafrost	MKCDICGEDVENSEQLQKHMAQAHATGMGDKSVEELEQPDLLGDTPEESAASEIPKPNH*
Ga0120159_10315364	3300012014	Permafrost	MKCEICGEDVKNSEELQKHMERLHPTDEGDTEKGESPDLLGDTPDESAEIETPLPTN*
Ga0120159_10420072	3300012014	Permafrost	MECDICGQNVENSEDLQKHKERAHPTGMGDKSMDNLEKPDLLGDTPEESATSEMPKATH*
Ga0120147_10142983	3300013758	Permafrost	MECDICGQDVENSEDLQKHKEQSHATGVVDTPERPDPIGDTPEESAASE
Ga0120179_10000012	3300013763	Permafrost	MKCDICNEHVENSEELQKHMEAAHPVGVGDNLERPDLLGDTPEESAVVETQLPTH*
Ga0120179_10396633	3300013763	Permafrost	CGQNVENSEDLQKHKERAHPTGMGDKSIDNVEKPDLLGDTPEESATSEMPKATH*
Ga0120111_10038523	3300013764	Permafrost	MECDICGEDVENSDDLQKHKERAHATGAGDNLERPDVLGDTPEESAASEIPKAT*
Ga0120181_10082764	3300013766	Permafrost	MECDICGEDVENSDDLQKHKERAHATGVADNLERPDLLGDTPEESAASEIPKAT*
Ga0120109_10091684	3300014052	Permafrost	SAKEAIMKCDICGEDVENSEQLQKHMEQAHATGMGDKSVEELEQPDLLGDTPEESAASEIPKPNH*
Ga0120109_10256603	3300014052	Permafrost	MECDICGEDVENSDDLQKHKERAHATGVGDNLERSDLLGDTPEESAASEIPKAT*
Ga0120170_10560941	3300014823	Permafrost	HKEQSHATGVVDTPERPDPIGDTPEESAASEIPEATH*
Ga0120104_10561123	3300014829	Permafrost	ENSEDLQKHKEQSHATGVVDTPERPDPIGDTPEESAASEIPEATH*
Ga0167668_10127892	3300015193	Glacier Forefield Soil	MKCDICNQQVDNSEELQKHMEQAHPTGAGDNLERPDLLGDTPEESAAEETPQPTH*
Ga0167668_10172632	3300015193	Glacier Forefield Soil	VKEAIMDCDICGQAVENSEELQKHMEKAHPTGVGDPETPDLVGDTPEESAASETRQATH*
Ga0167668_10383391	3300015193	Glacier Forefield Soil	MECEICGQDIENSEELLNHKEQMHPQDKGDKSIDNLERPDLLGVTPEESAASETPKPTS*
Ga0193751_11035801	3300019888	Soil	MKCDLCNQSVENSEELQKHMELAHPAGAGNNSVKDLERPDLLGDTPEESADVEPPLPTH
Ga0215015_105025142	3300021046	Soil	VECDICGQDIENSEELQKHKEGAHPAGVGDKSMDNLEKPDLLRDTQEESAASENAKPTY
Ga0210408_114345711	3300021178	Soil	MKCDVCSHEVGNSEELQKHKELAHPAGADNLEKPDLLGDTPEESAAIEVAQPTH
Ga0193695_10028084	3300021418	Soil	MECDICGQNVENSEELQKHKEGAHPTGMGDKSMDNLEKPDLLGDTPEESATSEIPKATH
Ga0210394_1000615512	3300021420	Soil	MKCDICGHAVENSEELQKHVEREHPTGAENLETPDLLGDTPEESAAVDIPLPTH
Ga0210394_103616062	3300021420	Soil	MKCDICNQHVENSEELQKHMEQAHPTGVADNLERPDLLGDTPEESAAVEAPLPTH
Ga0210394_108626351	3300021420	Soil	ASDPFAKVAVMKCDICSHEVGNSEELQKHKELAHPAGADNLEQPDLRGDTAEESAAAEVALPTH
Ga0210384_100898596	3300021432	Soil	MQCDICGQDIENSEDLQKHLERAHPAPLGDKSLDNLERPDLVGDVPDESAVIGIPEPTH
Ga0210384_102773992	3300021432	Soil	MKCDICDQHVENSEELQKHMEQAHPSGAGDNLERPDLLGDTPEESAAAEPPLPTH
Ga0210384_105824571	3300021432	Soil	MECDICGQDVENSEDLQKHKEQAHAAGAGDKLERPDLVGDAAGESAASAVPKAT
Ga0210410_104372283	3300021479	Soil	MHCDVCSQEVGNSEELQKHKELAHPAGADNLERPDLLGDSPEESAAIEVSQAAH
Ga0210410_108464391	3300021479	Soil	MKCDICDQHVENSEELQKHMEAAHPAGAGDLEKPDLLGDTPEESAAVEA
Ga0210410_117838751	3300021479	Soil	SDLSAQEAIMKCDICNQHVDNSEELHNHMEQAHPAGAGDTLERPDLLGDTPEESAAAETPLPTH
Ga0212123_1000060113	3300022557	Iron-Sulfur Acid Spring	MDCDICGQDVENSEELQKHMEQAHPTGVGDLEKPDLVGDTPEESAASETRQATH
Ga0212123_100332464	3300022557	Iron-Sulfur Acid Spring	MKCDICDEHVENSEALQKHMEAAHPAGVDDLEKPDLLGDTPEESAAIEAPLPTH
Ga0208850_10314541	3300025457	Arctic Peat Soil	MECDICGQDVKNSEELQKHRERMHPTGEGDKSMDNLEKPDLLGDTPEESAASETPKASH
Ga0208356_100004537	3300025504	Arctic Peat Soil	MKCDICGQDVENSEDLQKHKEQAHPTGVGDKLETPDLLDDTPEESAASEVPKATY
Ga0208355_10296312	3300025581	Arctic Peat Soil	MKCDICSQDVENSEDLQKHKELAHPAGVSDKSDKSMDNLEQPDLSEDSPEESPAIETPVPIH
Ga0207665_103039323	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKCDICGQGFESSEDLQKHLDGAHHTNDKLESPDLIGDTPEESAAVAIPRPTH
Ga0209840_10324051	3300026223	Soil	MKCDICGQAVENSEELEKHREREHPTNVGDNLESPDLMGDTPEESAGVEPPLPTH
Ga0209880_10154224	3300026271	Soil	MKCDICGQGVENSEELEKHREREHPTNVGDNLESPDLKGDTPEESAAAETPQPTH
Ga0209880_11038972	3300026271	Soil	MKCDICGQDVENSDDLQNHKEREHPTGVGDSSADDMEKPDLLGDTPEESTASESPKATY
Ga0209219_10051813	3300027565	Forest Soil	MQCDICGQDVGNSDQLEKHKEQMHPTDEGEKSIDNLEKPDHLGETPEQSATSEAPRPQH
Ga0209219_10549052	3300027565	Forest Soil	MKCDICGQDVENSEDLQKHKEQAHPTGEGDKSVDNLERPDLVADAPEESAGSEIQRPVH
Ga0209219_10575791	3300027565	Forest Soil	MKCDICGQSVENSEELEKHTEQAHPTGAGDNLERPDLLGDTPEQSAAVEVPQPTH
Ga0209220_100016020	3300027587	Forest Soil	MECDICGQDVENSEDLQKHKEQAHVTGVGDGLERPDLVGDTPEESAASAIPTTSH
Ga0209220_100018913	3300027587	Forest Soil	MNCDICGEAVENSEELQKHMERAHPTGVGDPETPDLVGDTPEESAASETRQATH
Ga0209220_100035013	3300027587	Forest Soil	MECDICGQDVENSEELQKHKERAHATGVGDNLERPDLLEDAPEESAASEIPNAT
Ga0209220_10062464	3300027587	Forest Soil	VECDICGQVVENSEDLQKHKERTHPAGLGDESIDNLEKPDPLDDTPEESDVGEVPKGNH
Ga0209009_10001421	3300027667	Forest Soil	MKCDICSQDVENSEELQKHMEREHASGMGDKSMDNLEKPDMLGDTSAESAAIETPLPTH
Ga0209118_10007997	3300027674	Forest Soil	MKCDICNQNVDNSEELQKHMEQAHPTSVADNLERPDMLGDTPEESAAVEGPLPTH
Ga0209118_10330553	3300027674	Forest Soil	VECDICGQVVENSEDLQKHKERTHPAGLGDESIDNLEKPDPSDDTPEESDVGEVPKRNH
Ga0209166_101170932	3300027857	Surface Soil	MKCDVCSQEVGNSEELQKHMDLTHPAGADNLEKPDLLGDTPEESAAIEVAQPTH
Ga0209526_100375133	3300028047	Forest Soil	VECDICGQVVENSEDLQRHKERAHPAGLSDESTDNLEKPDPLDDTPEESDVGEGPKGNQ
Ga0209526_106365851	3300028047	Forest Soil	MKCDVCSQEVGNSEELQKHKELTHPAGADNLEKPDLLGDTSDESAAIEVAEPTH
Ga0222749_101054172	3300029636	Soil	MKCDICDQHVENSEELQKHMEQAHTSGAGDNLDRPDLLGDTPEESAAAEPPLPTH
Ga0099845_13091701	3300030975	Boreal Forest Soil	KCDICNQNVDNSEELQKHMEEAHPTGVADSLERPDLLGDTPEESAAVVAPLPTH
Ga0307374_10000061118	3300031670	Soil	MKCDVCNQEVGNSEELQKHKELTHPAGVENLEKPDLEKPDLLGDTPEESAAVEGAQPTH
Ga0307374_1000297616	3300031670	Soil	MKCDVCSQEVGNSEELQKHKELTHPAGADKLEKPDLLGDTPEESAAIEVSQPTH
Ga0307374_100749074	3300031670	Soil	MKCDICRQEVGNSEELQKHMELTHPAGSDNLEKPDLLGDTPEESAAIEVAQPTH
Ga0307374_105375611	3300031670	Soil	GTSDPFGKEAIMKCDVCSQEVGTSEELRKHKELTHPAGAEDLAEDLEKPELLGDTPEESAAVEVAQAAH
Ga0307372_100332617	3300031671	Soil	MKCDVCSQEVGTSEELRKHKELTHPAGAEDLAEDLEKPELLGDTPEESAAVEVAQAAH
Ga0307372_100953871	3300031671	Soil	MKCDICSQEVGNSEELQKHMELTHPAGSENLEKPDLLGDTPEESAAIEVAQPTH
Ga0311301_121218261	3300032160	Peatlands Soil	MECDFCGQEMDNAEALQKHKERAHPDGLGDQSADNLETPDLSGDTPEESATRDAPK
Ga0315742_134355681	3300032756	Forest Soil	PRIYLPREAIMKCDICNEHVENSEELQKHMEQAHPTGAADTLERPDLLGDTPEESAAVEAPLPTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082269

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences