Metagenome / Metatranscriptome Family F082258

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082258
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	63 residues
Representative Sequence	VRPRLTEQGAKRRGERERTVGLDPEDEAARWLEEQDPAPPPKPSKSLFKSKELHRWRQKRGG
Number of Associated Samples	91
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.63 %
% of genes near scaffold ends (potentially truncated)	23.01 %
% of genes from short scaffolds (< 2000 bps)	86.73 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.611 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.354 % of family members)
Environment Ontology (ENVO)	Unclassified (24.779 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.248 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00903	Glyoxalase	30.09
PF12681	Glyoxalase_2	11.50
PF00296	Bac_luciferase	8.85
PF03449	GreA_GreB_N	3.54
PF00009	GTP_EFTU	2.65
PF13449	Phytase-like	1.77
PF01061	ABC2_membrane	1.77
PF01058	Oxidored_q6	0.88
PF07690	MFS_1	0.88
PF00512	HisKA	0.88
PF02518	HATPase_c	0.88
PF12704	MacB_PCD	0.88
PF08044	DUF1707	0.88
PF07883	Cupin_2	0.88
PF07730	HisKA_3	0.88
PF00291	PALP	0.88
PF00441	Acyl-CoA_dh_1	0.88
PF05872	HerA_C	0.88
PF04828	GFA	0.88
PF08002	DUF1697	0.88
PF01551	Peptidase_M23	0.88
PF03447	NAD_binding_3	0.88
PF00115	COX1	0.88
PF04982	HPP	0.88
PF13466	STAS_2	0.88
PF00892	EamA	0.88
PF13376	OmdA	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	8.85
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	3.54
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	0.88
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	0.88
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	0.88
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	0.88
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.88
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	0.88
COG3448	CBS-domain-containing membrane protein	Signal transduction mechanisms [T]	0.88
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.88
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.88
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.88
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.88
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.88
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.61 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	58.41 %
Unclassified	root	N/A	12.39 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	56.64 %
Unclassified	root	N/A	12.39 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.93 %
Unclassified	root	N/A	12.39 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	9.73 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.77 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	15.04 %
Unclassified	root	N/A	12.39 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7.08 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	2.65 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1.77 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.04 %
Unclassified	root	N/A	12.39 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	2.65 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	1.77 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.88 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.04 %
Unclassified	root	N/A	12.39 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	2.65 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	1.77 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	0.88 %
Aeromicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Aeromicrobium	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.04 %
Unclassified	root	N/A	12.39 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	2.65 %
unclassified Paenibacillus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus	1.77 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.88 %
Aeromicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Aeromicrobium	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.04 %
Unclassified	root	N/A	12.39 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	2.65 %
Paenibacillus sp. P22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. P22	1.77 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.88 %
Aeromicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Aeromicrobium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2222190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14253644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300000956\|JGI10216J12902_100120364	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300000956\|JGI10216J12902_111464510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	879	Open in IMG/M
3300004081\|Ga0063454_100923971	Not Available	692	Open in IMG/M
3300004153\|Ga0063455_101673092	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300004156\|Ga0062589_102701762	Not Available	517	Open in IMG/M
3300004463\|Ga0063356_101285663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1069	Open in IMG/M
3300004463\|Ga0063356_101723577	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300004463\|Ga0063356_102158518	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300004643\|Ga0062591_100918243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	823	Open in IMG/M
3300005093\|Ga0062594_102711339	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005328\|Ga0070676_10644880	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005329\|Ga0070683_101833713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300005332\|Ga0066388_100850527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1498	Open in IMG/M
3300005338\|Ga0068868_101170344	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300005441\|Ga0070700_100780138	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005456\|Ga0070678_101621406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	608	Open in IMG/M
3300005467\|Ga0070706_100229011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1735	Open in IMG/M
3300005536\|Ga0070697_101035872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	730	Open in IMG/M
3300005536\|Ga0070697_101364190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300005543\|Ga0070672_100939634	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300006876\|Ga0079217_10566507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	727	Open in IMG/M
3300006918\|Ga0079216_10410508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	855	Open in IMG/M
3300006918\|Ga0079216_11373847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300007004\|Ga0079218_10390242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1180	Open in IMG/M
3300009137\|Ga0066709_104172977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300009147\|Ga0114129_11335831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300009147\|Ga0114129_11730798	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300009789\|Ga0126307_10001546	All Organisms → cellular organisms → Bacteria	15173	Open in IMG/M
3300009789\|Ga0126307_10032222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4037	Open in IMG/M
3300010036\|Ga0126305_11247902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300010037\|Ga0126304_11006568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300010039\|Ga0126309_10105284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1459	Open in IMG/M
3300010039\|Ga0126309_10334087	Not Available	887	Open in IMG/M
3300010041\|Ga0126312_10143732	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300010041\|Ga0126312_10195917	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300010043\|Ga0126380_12020708	Not Available	528	Open in IMG/M
3300010166\|Ga0126306_11834204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300010359\|Ga0126376_12116117	Not Available	606	Open in IMG/M
3300010868\|Ga0124844_1307769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300011107\|Ga0151490_1319085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. P22	744	Open in IMG/M
3300012186\|Ga0136620_10270885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300012212\|Ga0150985_113434781	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300012530\|Ga0136635_10301997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300012668\|Ga0157216_10018133	All Organisms → cellular organisms → Bacteria	3704	Open in IMG/M
3300012681\|Ga0136613_10023918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3497	Open in IMG/M
3300012682\|Ga0136611_10000045	All Organisms → cellular organisms → Bacteria	64084	Open in IMG/M
3300012911\|Ga0157301_10176412	Not Available	701	Open in IMG/M
3300014326\|Ga0157380_12159833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Aeromicrobium	620	Open in IMG/M
3300014745\|Ga0157377_10678557	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300015200\|Ga0173480_10113899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1332	Open in IMG/M
3300015371\|Ga0132258_10170932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5240	Open in IMG/M
3300015371\|Ga0132258_11832772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1528	Open in IMG/M
3300015371\|Ga0132258_12043930	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300015372\|Ga0132256_100464772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1374	Open in IMG/M
3300015373\|Ga0132257_100758211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1209	Open in IMG/M
3300017695\|Ga0180121_10107300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300017789\|Ga0136617_10005830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11036	Open in IMG/M
3300018056\|Ga0184623_10089789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1417	Open in IMG/M
3300018056\|Ga0184623_10159929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1040	Open in IMG/M
3300018076\|Ga0184609_10494291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300018429\|Ga0190272_10270967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1291	Open in IMG/M
3300018432\|Ga0190275_11383030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	781	Open in IMG/M
3300018432\|Ga0190275_12202624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300018465\|Ga0190269_10376944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	866	Open in IMG/M
3300018466\|Ga0190268_10888687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300018466\|Ga0190268_10918834	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300018466\|Ga0190268_11704784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300018468\|Ga0066662_10605193	Not Available	1026	Open in IMG/M
3300018469\|Ga0190270_10007738	All Organisms → cellular organisms → Bacteria	5848	Open in IMG/M
3300018469\|Ga0190270_10043989	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M
3300018469\|Ga0190270_11089820	Not Available	831	Open in IMG/M
3300018469\|Ga0190270_13005597	Not Available	533	Open in IMG/M
3300018476\|Ga0190274_10241901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1628	Open in IMG/M
3300018476\|Ga0190274_10379045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1360	Open in IMG/M
3300018481\|Ga0190271_10036604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4033	Open in IMG/M
3300018920\|Ga0190273_12054184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300019767\|Ga0190267_11275777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300020003\|Ga0193739_1061219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	964	Open in IMG/M
3300021972\|Ga0193737_1057506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300025167\|Ga0209642_10157270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1315	Open in IMG/M
3300025908\|Ga0207643_11111874	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300025910\|Ga0207684_10113028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2325	Open in IMG/M
3300025917\|Ga0207660_10776186	Not Available	782	Open in IMG/M
3300025920\|Ga0207649_11548756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300025926\|Ga0207659_10608704	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300025927\|Ga0207687_10311182	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300025935\|Ga0207709_11665726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300025938\|Ga0207704_10836432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	771	Open in IMG/M
3300025940\|Ga0207691_10434916	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300026089\|Ga0207648_10960445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. P22	800	Open in IMG/M
3300027691\|Ga0209485_1224229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300028589\|Ga0247818_10650692	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300028608\|Ga0247819_10701287	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300028771\|Ga0307320_10419207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300028802\|Ga0307503_10423749	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300028812\|Ga0247825_10658387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	752	Open in IMG/M
3300028814\|Ga0307302_10122186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1252	Open in IMG/M
3300028889\|Ga0247827_10597695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300030336\|Ga0247826_10116326	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300031548\|Ga0307408_101134386	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300031548\|Ga0307408_102141651	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300031858\|Ga0310892_10773945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	664	Open in IMG/M
3300031858\|Ga0310892_11367641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300031940\|Ga0310901_10558103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300031995\|Ga0307409_100978673	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300032126\|Ga0307415_101929187	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300034354\|Ga0364943_0430464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.57%
Host-Associated	Host-Associated	27.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.72%
Plants	Host-Associated → Plants	27.43%
Aquatic	Environmental → Aquatic	8.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.50%
Freshwater	Environmental → Aquatic → Freshwater	6.19%
Sediment	Environmental → Aquatic → Sediment	2.65%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.21%
Loam	Environmental → Terrestrial → Soil → Loam	10.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.73%
Ice	Environmental → Aquatic → Freshwater → Ice	6.19%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.19%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.08%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.08%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	6.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.19%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.35%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.08%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	6.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.54%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.65%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_22221903	3300000033	Soil	VRYRLTEQGAKRRAERERGXGLSPEDEAARWLEEHDPEPTPEAPKSLFKSKELHRWRQKRGSPPS*
ICChiseqgaiiFebDRAFT_142536443	3300000363	Soil	RQQHRGGEPQPVRYRLTEQGAKRRAERERGXGLSPEDEAARWLEEHDPEPTPEAPKSLFKSKELHRWRQKRGSPPS*
JGI10216J12902_1001203642	3300000956	Soil	VTKREDAAKRRGERERQAGLDPEDEAARWLEEHDPPPALPPSKSKFKSPELHRWRRQQQRRDG*
JGI10216J12902_1114645102	3300000956	Soil	MRPRLTEEGAKRRGERERNVGLSPADEAARWLEENDPKPAPEPSKSLFKSKELHRWRRKRGGEPS*
Ga0063454_1009239712	3300004081	Soil	VRRPTREGAKKRAERERQTGLDPDDEAARWLSEHDPEPPPPESKSRFKAKELHRWRQRHQKS*
Ga0063455_1016730922	3300004153	Soil	KRAERERQTGLDPDDEAARWLSEHDPQPPPPESKSRFKAKELHRWRQRHQKS*
Ga0062589_1027017621	3300004156	Soil	VKQRPTEKGAKRRGERERNVGLDPDDEAARWLAEQDPEPPPQPSKSLFKSKELHRWRQKKRSG*
Ga0063356_1012856632	3300004463	Arabidopsis Thaliana Rhizosphere	MRPRLTEKGAKRRGERERSVGIDPEDEAARWLEEQDPKPPPEPSKSRFKSKELHRWRQKRGSS*
Ga0063356_1017235772	3300004463	Arabidopsis Thaliana Rhizosphere	MRPRLTHDGAKRRAERERQAGLDPEDDAALWLDQHDPLTTPPPSKSKFKSTELHRWRQKQQRGGG*
Ga0063356_1021585181	3300004463	Arabidopsis Thaliana Rhizosphere	VRHRLTEQGAKRRAERERGVGLSAEDEAARWLEEHDPKPAPEPPKSLFKSKELHRWRQKRGGSPPS*
Ga0062591_1009182432	3300004643	Soil	VRPRLTEQSAKRRGERERNVGLDPEDEAARWLEEQDPEPPPKPSKSLFKSKELHRWRQKRGG*
Ga0062594_1027113391	3300005093	Soil	MRPRLTHEGAKRRAERERQAGLEPEDEAARWLEEHDPPAPPPESKSKFKSPELHRWRQKQQRGDG*
Ga0070676_106448802	3300005328	Miscanthus Rhizosphere	MRPRLTHEGAKRRAERERQTGLEPEDEAARWLEEHDPPAPPPESKSKFKSPELHRWRQKQQRGDG*
Ga0070683_1018337131	3300005329	Corn Rhizosphere	MAVKRSLTSEGARRRGERERAAGLDPEDEAGRWLAEHDPAPQPAPPRSLGKSKELHRWRQRQ
Ga0066388_1008505273	3300005332	Tropical Forest Soil	MRRINEAAKKRAERERRTGLDPDDEAAKWLSEHDPKQPPPESKSRFKSKELHRWRQRQGKS*
Ga0068868_1011703442	3300005338	Miscanthus Rhizosphere	VTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRQKQQRGGG*
Ga0070700_1007801382	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPRASKSKFKSTELHRWRQKQQRGGG*
Ga0070678_1016214062	3300005456	Miscanthus Rhizosphere	RGGEPQPVTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRQKQQRGGG*
Ga0070706_1002290112	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VRYRLTEQGAKRRAERERGVGLSPEDDAARWLEEHDPEPTPEPPKSLFKSKELHRWRQKRGG*
Ga0070697_1010358722	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VRYRLTEQGAKRRAERERGVGLSPEDEAARWLEEHDPEPTPEPPKSLFKSKELHRWRQKRGG*
Ga0070697_1013641902	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VRARLTEKGAKRRAERERGVGIDPEDEAARWLEEQDPEPPPRPSKSLFKSKALHRWRQKRGG*
Ga0070672_1009396342	3300005543	Miscanthus Rhizosphere	VTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRLKQQRGGG*
Ga0079217_105665071	3300006876	Agricultural Soil	MRYRLTEKGAKRRGDRERNAGLEPEDDAARWLEEHDPTPPPEPSKSLVKSKELHRWR
Ga0079216_104105082	3300006918	Agricultural Soil	MTKRENAAKRRGERERQVGLDPEDEAARWLEEKDPAPAPPPSKSRFKSKELHRWRQKQAKKP*
Ga0079216_113738473	3300006918	Agricultural Soil	MRYRLTEKGAKRRGDRERNAGLEPEDDAARWLEEHDPTPPPEPSKSLVKSKELHRWRKARGG*
Ga0079218_103902422	3300007004	Agricultural Soil	MRYRLTEKGAKRRGDRERNAGLEPEDDAARWLEEHDPTPPPEPSKSLVKSKELHRWRKARSG*
Ga0066709_1041729771	3300009137	Grasslands Soil	LKRDAAKRRAEREQLAGLDPEDEAARWLREHDPPPEPVTPKGAFKSKALHRWRQQRGRQASPPK*
Ga0114129_113358311	3300009147	Populus Rhizosphere	MADRRREAAKRRGERERRTGLEADDEAARWLEEHEPPPAPEAPKSVGKS
Ga0114129_117307983	3300009147	Populus Rhizosphere	VAAKRGLTHRGAQKRGERERAAGLEPDDEAARWLAEHDPPPAPPTSRSLFKSKELHRWRQKRGG*
Ga0111538_120124422	3300009156	Populus Rhizosphere	MSRKREITSRGAQRLGERERETGLDADDEAARWLREHDPLPEPAPSKSAFKSKELHRWRQRRQRGET*
Ga0126307_100015467	3300009789	Serpentine Soil	VKPRPTHEGAKRRAERERSTGLDPEDEAARWLEEHDPPPAAPPSKSKLKSSELHRWRRKQQPGGG*
Ga0126307_100322225	3300009789	Serpentine Soil	LRPRLTHQGAQRRAERERRTGLEPEDEAARWLKEHDPPPKPPESKSKFKSTELHRWRQKQQRGG*
Ga0126305_112479022	3300010036	Serpentine Soil	MRPRLTHDGAKRRAERERQTGLEPDDEAARWLDDKDPPPKPPESKSKFKSTELHRWRQKQQRGG*
Ga0126304_110065681	3300010037	Serpentine Soil	LRPRLTHQGAQRRAERERRTGLEPEDEAARWLEEHDPPPKPPESKSKFKSTELHRWRQKQQRGG*
Ga0126309_101052843	3300010039	Serpentine Soil	MRPRLTHEGAKRRAERERQTGLDPDDEAARWLDERDPPPKPPESKSKFKSTELHRWRQKQQRGD*
Ga0126309_103340872	3300010039	Serpentine Soil	RGGEPQPVKRRPVEEAARRRAERERQSGLEPEDEAARWLEEHDPPPAPPDSKSKFKSTELHRWRQRQQRGGA*
Ga0126312_101437322	3300010041	Serpentine Soil	MRPRLTHEGAKGRGERERQAGLDPDDEAARWLDDKDPPPKPPESKSKFKSTELHRWRQKQQRGG*
Ga0126312_101959172	3300010041	Serpentine Soil	MSPKHRLTHEGARRRAEREREVGLDADDEAARWLAEHDPPEPERPKSVGKSKALHRWRQHPPRP*
Ga0126380_120207081	3300010043	Tropical Forest Soil	RRNEVAKKRAERERQTGLDPDDEAAKWLEEHDPKQPPPVSKSRFKSKELHRWLQRQGKS*
Ga0126306_118342042	3300010166	Serpentine Soil	VRYRLTEKGAEKRGERERAVGLEPEDEAARWLAENDPEPAPEPSKSLFKSKELHRWRKARGR*
Ga0126376_121161172	3300010359	Tropical Forest Soil	VGRRHEAAKKRAERERQAGLDPEDEAARWLSEHDPPPPEPESKSRFKSKELHRWRQGQQK
Ga0134127_123830531	3300010399	Terrestrial Soil	RRGGEPQPVTKREEAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPES*
Ga0124844_13077692	3300010868	Tropical Forest Soil	MRRINEAAKKRAERERRTGLDPDDEAAKWLSEHDPKQPPPESKSRFKSKELHR
Ga0151490_13190852	3300011107	Soil	EPQPVTKREDAAKRRGERERQTGLDPEDEAARWLADHDPPAPPPESKSKFKSTELHRWRQKQQRGGG*
Ga0136620_102708852	3300012186	Polar Desert Sand	VRPRLTEQGAKRRGERERTVGLDPEDEAARWLEEQDPAPPPKPSKSLFKSKELHRWRQKRGG*
Ga0150985_1134347811	3300012212	Avena Fatua Rhizosphere	MSKEQALRRSEKERQTGLDPDDEAGRWLADNDPKPPPPESKGRFKSKELHRWRQRQQGK*
Ga0136635_103019972	3300012530	Polar Desert Sand	VSNWPRSTSGGAEKRGERERAAGLDAEDEAARWLEEHDPKPPPPVPKSLTKSKGLHRWRQGKPKAP*
Ga0157216_100181332	3300012668	Glacier Forefield Soil	VRPRLTEKGAKRRGERERNVGLNPEDEAARWLEEHSPEPPPEPSKSLFKSKELHRWRRTRGG*
Ga0136613_100239182	3300012681	Polar Desert Sand	MKRRPSEEGAKRRGEREREAGLDPEDDAARWLDEHDPEPKPAVPKSVGKSKALHRWRQRKS*
Ga0136611_1000004537	3300012682	Polar Desert Sand	VSNWPRSTSGGAKKRGDRERAAGLDADDEAARWLEEHDPKPPPPVPKSLTKSKGLHRWRQGKPKAP*
Ga0157301_101764121	3300012911	Soil	QPVKQRPTEKGAKRRGERERNVGLDPDDEAARWLAEQDPEPPPQPSKSLFKSKELHRWRQKRGG*
Ga0157380_121598332	3300014326	Switchgrass Rhizosphere	VPGKRPTREQALRRAERERQTGLDPDDDAARWLEERDPKPPPPESKSKFKSKELHRWRQRRTGN*
Ga0157377_106785572	3300014745	Miscanthus Rhizosphere	VTKREEAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRQKQQRGGG*
Ga0173480_101138992	3300015200	Soil	VKQRPTEKGAKRRGERERNVGLDPDDEAARWLAEQDPEPPPQPSKSLFKSKELHRWRQKKRGG*
Ga0132258_101709328	3300015371	Arabidopsis Rhizosphere	LTHRGAQKRGERERAAGLDPEDEAARWLAEHDPPPAPAESKSLFKSKDLHRWRQRRQQRS
Ga0132258_118327723	3300015371	Arabidopsis Rhizosphere	MASKRPLTSRGAQRRGERERQAGLEPDDDAARWLAEHDAPPPEAPSKSLFKSKELHRWRQRQQQGS*
Ga0132258_120439302	3300015371	Arabidopsis Rhizosphere	VRGKRLTKEQALRRSERERQTGLDPEDEAGRWLEEHDPKPPPPESKSRFKSKELHRWRQSQRK*
Ga0132256_1004647723	3300015372	Arabidopsis Rhizosphere	VAAKRGLTHTGAQKRGERERQAGLDPADDAARWLGEHDPPPAPAPSKSLFKSKELHRYRQRQQKGS*
Ga0132257_1007582112	3300015373	Arabidopsis Rhizosphere	LTRRGAQKRGERERAAVLDPEDEAASWLAEHDPPPAPAESKSLFKSKDLHRWRQRRQQRS
Ga0180121_101073003	3300017695	Polar Desert Sand	MRPRLTEQGAKRRGERERTVGLDPQDEAARWLEEQDPAPPPKPSKSLFKSKELHRWRQKRGG
Ga0180121_101220002	3300017695	Polar Desert Sand	VSNWPRSTSGGAEKRGERERAAGLDAEDEAARWLEEHDPKPPPPVPKSLTKSKGLHRWRQGRPKAP
Ga0136617_100058302	3300017789	Polar Desert Sand	MKRRPSEEGAKRRGEREREAGLDPEDDAARWLDEHDPEPKPAVPKSVGKSKALHRWRQRK
Ga0184623_100897891	3300018056	Groundwater Sediment	VRPRLTEKGAKRRGERERGVGIDPEDEAARWLEEQDPAPPPEPSKSLFKSKELHRWRQKRGGKP
Ga0184623_101599292	3300018056	Groundwater Sediment	VRFRLTEKGTKRRGERERNVGLSPEDEAARWLEENDPKPAPEPSKSLFKSKELHRWRQKRGG
Ga0184609_104942912	3300018076	Groundwater Sediment	VKQRPTEKGAKRRAERERSVGLDPDDEAARWLAEQDPEPPPQPSKSLFKSKELHRWRQKRGG
Ga0190272_102709673	3300018429	Soil	VRHRLTEQGAKRRGERERNAGLEPEDAAAKWLEEHEPTQPPEPSKSLFKSKELHRWRKARGERPGG
Ga0190275_113830301	3300018432	Soil	MRPRLTHEGAKRRAERERQAGLDPEDAAARWLEEQDPPPAPPASKSKFKSKELHRWREQQKRGG
Ga0190275_122026241	3300018432	Soil	VTKREDAAKRRGERERQVGLEEDEAARWLEEHDPPPKAPESKSRFKSKELHRWREGQKRRPGS
Ga0190269_103769442	3300018465	Soil	GAKRRAERERQTGLDPEDEAGRWLEDHDPPPTPPESKSKFKSTELHRWRQRQQRGG
Ga0190268_108886871	3300018466	Soil	VRPRLTEKGAKRRGERERGVGIDPEDEAARWLEEQDPKPPPEPSKSRFKSKELHR
Ga0190268_109188342	3300018466	Soil	VTRREDEAKRRAERERQVGLDPADAAARWLEEQDPPPAPPASKSRFKSKELHRWRQKQQRGG
Ga0190268_117047842	3300018466	Soil	VKPRPTEQGAKRRGKRERAVGIDPEDEAARWLDEQDPKPPPEPSKSRFKSKELHRWRQKRGG
Ga0066662_106051933	3300018468	Grasslands Soil	VEPVRKLTRDGAKKRAERERETGLDTADAAAKWLEEHDPKPAPSEPKSRFKSKELHRWRQRQQKKS
Ga0190270_100077381	3300018469	Soil	VRARLTEKGAKRRGERERGVGIDPEDEAARWLEEQDPEPPPEPSKSRFKSKELHRWRQKRGG
Ga0190270_100439892	3300018469	Soil	VTKREDAAKRRGERERQAGLDTDDEAARWLEEHDPPAAPPPSKSKFKSPELHRWRQKQQRGGG
Ga0190270_110898202	3300018469	Soil	VKPRLTEEGAKRRGERERAVGLDADDEAARWLAERDPAPPPEPSKSRFKSKELHRWRQKRGGKA
Ga0190270_130055972	3300018469	Soil	LTHEGAKRRAERERQTGLDPEDEAARWLAEQDPPPAPPSSKSKFKSKELHRWREQRRRDE
Ga0190274_102419014	3300018476	Soil	VTKREDAAKRRGERERQTGLDPEDEAARWLEEHDRPPAPPPSKSKFKSPELHRWRQKQQRGD
Ga0190274_103790452	3300018476	Soil	MKPRLTEEGAKRRGERERAVGLDAEDEAARWLAERDPAPPPEPSKSRFKSKELHRWRQKRGGKA
Ga0190271_100366044	3300018481	Soil	VTKREDAAKRRGERERQAGLDPDDAAARWLEEREPPPAPSPSKSRFKSKELHRWREQQKRDG
Ga0190273_120541842	3300018920	Soil	MRPRLTEKGAKRRGERERGVGIDPEDEAARWLEEQDPEPPPKPSKSRFKSKELHRWRQKRGG
Ga0190267_112757773	3300019767	Soil	EKGAKRRGERERRVGIDPEDEAARWLEEQDPEPPPEPSKSLFKSKELHRWRQKRGG
Ga0193739_10612192	3300020003	Soil	MRPRLTEQGAKRRGERERSVGIDPEDEAARWLEEQDPEPPPEPSKSRFKSKELHRWRQKRGG
Ga0193737_10575061	3300021972	Soil	EPQPMRPRLTEKGAKRRGERERGVGIDPEDEAARWLEERDPKPPPEPSKSLFKSKELHRWRQKRGG
Ga0209642_101572703	3300025167	Soil	VRYRLTEQGAKRRGERERKAGLEPEDEAARWLEEHDSTPPPEPPKSLFKSKELHRWRKARGG
Ga0207643_111118742	3300025908	Miscanthus Rhizosphere	VTKREEAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRQKQQRGGG
Ga0207684_101130284	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VRYRLTEQGAKRRAERERGVGLSPEDDAARWLEEHDPEPTPEPPKSLFKSKELHRWRQKRGG
Ga0207660_107761861	3300025917	Corn Rhizosphere	MAAKRGLTSEGARRRAERERAVGLDPEDAAAQWLAEHDPAPVPAPPKSLGKSKELHRWRQRQERSR
Ga0207649_115487562	3300025920	Corn Rhizosphere	MRPRLTHEGAKRRAERERQAGLEPEDEAARWLEEHDPPAPPPESKSKFKSPELHRLRQKQQRGDG
Ga0207659_106087042	3300025926	Miscanthus Rhizosphere	MRPRLTHEGAKRRAERERQTGLEPEDEAARWLEEHDPPAPPPESKSKFKSPELHRWRQKQQRGDG
Ga0207687_103111822	3300025927	Miscanthus Rhizosphere	MRPRLTHEGAKRRAERERQAGLEPEDEAARWLEEHDPPAPPPESKSKFKSPELHRWRQKQQRGDG
Ga0207709_116657261	3300025935	Miscanthus Rhizosphere	MRPRLTHEGAKRRAERERQAGLEPEDEAARWLEEHDPPAPPPESKSKFKSPELHRWRQK
Ga0207704_108364322	3300025938	Miscanthus Rhizosphere	VTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRQKQQRGGG
Ga0207691_104349162	3300025940	Miscanthus Rhizosphere	VTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRLKQQRGGG
Ga0207679_114786452	3300025945	Corn Rhizosphere	VTKREEAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELH
Ga0207648_109604452	3300026089	Miscanthus Rhizosphere	EPQPMRPRLTHEGAKRRAERERQAGLEPEDEAARWLEEHDPPAPPPESKSKFKSPELHRWRQKQQRGDG
Ga0209485_12242293	3300027691	Agricultural Soil	MRYRLTEKGAKRRGDRERNAGLEPEDDAARWLEEHDPTPPPEPSKSLVKSKELHRWRKARGG
Ga0247818_106506921	3300028589	Soil	GRQQRRGGEPQPVTKREDAVKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRQKQQRGGG
Ga0247819_107012872	3300028608	Soil	VTKREDAAKRRGERERQTGLDTDDEAARWLEEHDAPAAPPPSKSKFKSPELHRWRQKQQRGGG
Ga0307320_104192071	3300028771	Soil	EGGYRPFLCSETMKRKLTHEGAKKRAEHERTTGLDPEDDAARWLGEHDPKPAPPPKKFKSKELHKWRQRQQRGE
Ga0307503_104237492	3300028802	Soil	VTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPSAPPPESKSKFKSTELHRWRQKQQRGGG
Ga0247825_106583872	3300028812	Soil	VAAKRGLTHRGAQRRGERERATGLDPEDEAARWLADHDPPPAPAPSKSLFKSKELHRWRQRQQKGS
Ga0307302_101221861	3300028814	Soil	VKQRPTEKGAKRRGERERKVGLDPDDEAARWLAEGDPEPPPQPSKSLFKSKELHRWRQKRGG
Ga0247827_105976952	3300028889	Soil	MADRRREAAKRRGERERTTGLDPEDEAARWLEEHDPPPAPETPKSAGKSKQLHRWRQRRS
Ga0247826_101163263	3300030336	Soil	VTKREDAVKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRWRQKQQRGGG
Ga0307408_1011343861	3300031548	Rhizosphere	PRLTHEGAKRRAERERQAGVDPEDEVARWLAEQNPPPAPAPSKARFKSKELHRWQQRQQRGD
Ga0307408_1021416511	3300031548	Rhizosphere	THEGARRRGERERRVGLDPEDEATRWLEDHDPPPKPPESKSKFKSTALHRWRERQKHGAPADGR
Ga0310892_107739451	3300031858	Soil	VTKREDAAKRRGERERQTGLDPEDEAARWLDDHDPPAPPPESKSKFKSTELHRW
Ga0310892_113676412	3300031858	Soil	MRPRLTHEGAKRRAERERQAGLEPEDEAARWLEEHDPPTPPPESKSKFKSPELHRWREQRRREGS
Ga0310901_105581032	3300031940	Soil	MRPRLTHEGAKRRAERERQAGLEPEDEAARWLEEHDPPTPPPESKSKFKSPELHRWRQKQQRGD
Ga0307409_1009786732	3300031995	Rhizosphere	MRPRLTHEGAKGRGERERQAGLDPDDEAARWLDDKDPPPKPPESKSKFKSTELHRWRQKQQRGG
Ga0307415_1019291872	3300032126	Rhizosphere	VRPRLTHEGAKRRGERERSVGLDPEDEATRWLEEHDPPPKPPESKSKFKSTALHRWRERQKHGAPADGR
Ga0364943_0430464_283_471	3300034354	Sediment	VRARLTGKDAKRRGERERGVGIDPEDEAARWLEEQDPKPPPEPSKSRFKSKELHRWRQKRGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082258

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences