Metagenome / Metatranscriptome Family F082241

Basic Information
Family ID	F082241
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	65 residues
Representative Sequence	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP
Number of Associated Samples	98
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.57 %
% of genes near scaffold ends (potentially truncated)	46.02 %
% of genes from short scaffolds (< 2000 bps)	81.42 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Most Common Taxonomy
Group	Bacteria (64.602 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.274 % of family members)
Environment Ontology (ENVO)	Unclassified (44.248 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.062 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.96% β-sheet: 0.00% Coil/Unstructured: 52.04%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03795	YCII	36.28
PF13410	GST_C_2	12.39
PF13417	GST_N_3	10.62
PF00043	GST_C	9.73
PF12680	SnoaL_2	4.42
PF06983	3-dmu-9_3-mt	4.42
PF08327	AHSA1	3.54
PF10604	Polyketide_cyc2	1.77
PF00106	adh_short	0.88
PF07237	DUF1428	0.88
PF05988	DUF899	0.88
PF01638	HxlR	0.88
PF01872	RibD_C	0.88
PF01425	Amidase	0.88
PF13580	SIS_2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	36.28
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	9.73
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	9.73
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	4.42
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	4.42
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.88
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.88
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.88
COG5507	Uncharacterized conserved protein YbaA, DUF1428 family	Function unknown [S]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.60 %
Unclassified	root	N/A	35.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.60 %
Unclassified	root	N/A	35.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.60 %
Unclassified	root	N/A	35.40 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.79 %
Unclassified	root	N/A	35.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.40 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.09 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.40 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.47 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.40 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.54 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.65 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.40 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.40 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.40 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.40 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.65 %
Myxococcus stipitatus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → Myxococcus stipitatus	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003203\|JGI25406J46586_10011181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3945	Open in IMG/M
3300004156\|Ga0062589_101696800	Not Available	630	Open in IMG/M
3300004479\|Ga0062595_101238810	Not Available	666	Open in IMG/M
3300004643\|Ga0062591_102786252	Not Available	518	Open in IMG/M
3300005271\|Ga0065713_1001657	Not Available	516	Open in IMG/M
3300005289\|Ga0065704_10394530	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300005293\|Ga0065715_11108446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300005294\|Ga0065705_10026397	All Organisms → cellular organisms → Bacteria → Proteobacteria	1958	Open in IMG/M
3300005328\|Ga0070676_11296053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300005329\|Ga0070683_100033854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4662	Open in IMG/M
3300005331\|Ga0070670_100775994	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300005332\|Ga0066388_100320946	All Organisms → cellular organisms → Bacteria → Proteobacteria	2194	Open in IMG/M
3300005339\|Ga0070660_101256201	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300005340\|Ga0070689_101804651	Not Available	558	Open in IMG/M
3300005340\|Ga0070689_101886562	Not Available	546	Open in IMG/M
3300005343\|Ga0070687_100896307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300005354\|Ga0070675_101446090	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300005356\|Ga0070674_101432919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300005364\|Ga0070673_100670462	Not Available	950	Open in IMG/M
3300005529\|Ga0070741_10525439	All Organisms → cellular organisms → Bacteria → Proteobacteria	1067	Open in IMG/M
3300005529\|Ga0070741_10828364	Not Available	806	Open in IMG/M
3300005535\|Ga0070684_100016047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6117	Open in IMG/M
3300005548\|Ga0070665_100172036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2167	Open in IMG/M
3300005548\|Ga0070665_101199134	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300005614\|Ga0068856_100776494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	978	Open in IMG/M
3300005615\|Ga0070702_101134407	Not Available	626	Open in IMG/M
3300005616\|Ga0068852_102591691	Not Available	527	Open in IMG/M
3300005617\|Ga0068859_100844330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1002	Open in IMG/M
3300005719\|Ga0068861_100809399	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300005841\|Ga0068863_100352323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1434	Open in IMG/M
3300005844\|Ga0068862_101238006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300005983\|Ga0081540_1349329	Not Available	506	Open in IMG/M
3300005985\|Ga0081539_10010617	All Organisms → cellular organisms → Bacteria → Proteobacteria	7435	Open in IMG/M
3300006034\|Ga0066656_10596155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	715	Open in IMG/M
3300006894\|Ga0079215_10678416	Not Available	691	Open in IMG/M
3300009093\|Ga0105240_10137602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2923	Open in IMG/M
3300009098\|Ga0105245_11166515	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300009098\|Ga0105245_12275595	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300009101\|Ga0105247_11053732	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300009148\|Ga0105243_10071650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2803	Open in IMG/M
3300009148\|Ga0105243_11742653	Not Available	653	Open in IMG/M
3300009148\|Ga0105243_12931640	Not Available	517	Open in IMG/M
3300009545\|Ga0105237_10196590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2017	Open in IMG/M
3300009553\|Ga0105249_10319385	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300009610\|Ga0105340_1440882	Not Available	581	Open in IMG/M
3300010044\|Ga0126310_11079128	Not Available	637	Open in IMG/M
3300010399\|Ga0134127_10878919	Not Available	950	Open in IMG/M
3300010399\|Ga0134127_11801690	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300010400\|Ga0134122_13079541	Not Available	521	Open in IMG/M
3300010403\|Ga0134123_13353556	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → Myxococcus stipitatus	517	Open in IMG/M
3300010880\|Ga0126350_11454743	Not Available	906	Open in IMG/M
3300011119\|Ga0105246_10424792	Not Available	1110	Open in IMG/M
3300011119\|Ga0105246_12564577	Not Available	503	Open in IMG/M
3300012469\|Ga0150984_121523490	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300012893\|Ga0157284_10307311	Not Available	522	Open in IMG/M
3300012896\|Ga0157303_10132605	Not Available	647	Open in IMG/M
3300012913\|Ga0157298_10115177	Not Available	752	Open in IMG/M
3300012914\|Ga0157297_10406407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300012922\|Ga0137394_10502185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1030	Open in IMG/M
3300012985\|Ga0164308_10605714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	932	Open in IMG/M
3300012985\|Ga0164308_11564560	Not Available	607	Open in IMG/M
3300013308\|Ga0157375_10989361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	981	Open in IMG/M
3300013308\|Ga0157375_11986267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300014326\|Ga0157380_10179415	All Organisms → cellular organisms → Bacteria → Proteobacteria	1859	Open in IMG/M
3300014326\|Ga0157380_11305458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300014326\|Ga0157380_11725311	Not Available	684	Open in IMG/M
3300014968\|Ga0157379_11582263	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300015264\|Ga0137403_10599994	All Organisms → cellular organisms → Bacteria → Proteobacteria	966	Open in IMG/M
3300017965\|Ga0190266_10027836	All Organisms → cellular organisms → Bacteria → Proteobacteria	1756	Open in IMG/M
3300018000\|Ga0184604_10101117	Not Available	893	Open in IMG/M
3300018072\|Ga0184635_10011062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3151	Open in IMG/M
3300018081\|Ga0184625_10023509	All Organisms → cellular organisms → Bacteria → Proteobacteria	2965	Open in IMG/M
3300018081\|Ga0184625_10081886	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300018422\|Ga0190265_11917933	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300018429\|Ga0190272_12340957	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300018431\|Ga0066655_11139015	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300018432\|Ga0190275_10921651	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300018433\|Ga0066667_11717549	Not Available	564	Open in IMG/M
3300018468\|Ga0066662_11356961	Not Available	733	Open in IMG/M
3300018476\|Ga0190274_10730982	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038	Open in IMG/M
3300018482\|Ga0066669_11064064	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300019362\|Ga0173479_10248440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	781	Open in IMG/M
3300020060\|Ga0193717_1012939	All Organisms → cellular organisms → Bacteria → Proteobacteria	3888	Open in IMG/M
3300021082\|Ga0210380_10107845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1234	Open in IMG/M
3300021170\|Ga0210400_10690151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	840	Open in IMG/M
3300021339\|Ga0193706_1109305	Not Available	753	Open in IMG/M
3300021384\|Ga0213876_10174404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1144	Open in IMG/M
3300022756\|Ga0222622_10408168	All Organisms → cellular organisms → Bacteria → Proteobacteria	957	Open in IMG/M
3300025900\|Ga0207710_10011583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3711	Open in IMG/M
3300025907\|Ga0207645_10074665	All Organisms → cellular organisms → Bacteria	2170	Open in IMG/M
3300025912\|Ga0207707_10966451	Not Available	701	Open in IMG/M
3300025913\|Ga0207695_10405408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1248	Open in IMG/M
3300025918\|Ga0207662_10933946	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300025924\|Ga0207694_10031741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4037	Open in IMG/M
3300025931\|Ga0207644_10524870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	978	Open in IMG/M
3300025935\|Ga0207709_10073524	All Organisms → cellular organisms → Bacteria	2178	Open in IMG/M
3300025936\|Ga0207670_11242258	Not Available	631	Open in IMG/M
3300025937\|Ga0207669_10005673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5629	Open in IMG/M
3300025937\|Ga0207669_11267691	Not Available	625	Open in IMG/M
3300025945\|Ga0207679_11983372	Not Available	530	Open in IMG/M
3300026041\|Ga0207639_10117550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2179	Open in IMG/M
3300026116\|Ga0207674_11912889	Not Available	559	Open in IMG/M
3300026555\|Ga0179593_1078783	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300027886\|Ga0209486_10827590	Not Available	608	Open in IMG/M
3300028379\|Ga0268266_10223017	All Organisms → cellular organisms → Bacteria → Proteobacteria	1734	Open in IMG/M
3300028876\|Ga0307286_10026197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1903	Open in IMG/M
3300031740\|Ga0307468_100363670	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300032782\|Ga0335082_10055215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4085	Open in IMG/M
3300034155\|Ga0370498_109162	Not Available	649	Open in IMG/M
3300034155\|Ga0370498_169751	Not Available	532	Open in IMG/M
3300034157\|Ga0370506_063027	Not Available	793	Open in IMG/M
3300034257\|Ga0370495_0066427	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.87%
Host-Associated	Host-Associated	45.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.67%
Plants	Host-Associated → Plants	45.13%
Aquatic	Environmental → Aquatic	6.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.39%
Sediment	Environmental → Aquatic → Sediment	5.31%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.58%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.62%
Loam	Environmental → Terrestrial → Soil → Loam	8.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.42%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	7.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.54%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Miscanthus Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005271	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample from Bulk Soil Replicate 2: eDNA_1	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M
3300034157	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_18	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25406J46586_100111812	3300003203	Tabebuia Heterophylla Rhizosphere	MIEFKPRYFVLPAIALVVLAMLHPADGGRSAGCGVRSADPGIRASFASFQRTQSQTAAQVCRLASNNLP*
Ga0062589_1016968002	3300004156	Soil	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP*
Ga0062595_1012388102	3300004479	Soil	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACTVQMRDAGIRASFAEFQRTQSATAAKVCAIASNTLP*
Ga0062591_1027862521	3300004643	Soil	MIEFKPRFFVLPAIAVTVLAMLHAPADGGRARRDECGPAVRIADPGLRASFAAAAR
Ga0065713_10016572	3300005271	Miscanthus Rhizosphere	RYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKMCAIASNTLP*
Ga0065704_103945302	3300005289	Switchgrass Rhizosphere	MIEFKPRYFVLPAIALTVLGMLHPADGGRASRDVCVTQIRDPGIRASFAALRGNQSPTAAKACAIANNNLP*
Ga0065715_111084461	3300005293	Miscanthus Rhizosphere	MIEFKPRYFLPPGIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATA
Ga0065705_100263972	3300005294	Switchgrass Rhizosphere	MIEFKPRYFVLPVLALTVLGMLHPADGGRASRDACVTQIRDPGVRASFAALRGNQSPTAAKACAIANNNLP*
Ga0070676_112960532	3300005328	Miscanthus Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAK
Ga0070683_1000338543	3300005329	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYGPADGGRADDCAGLRTSDAGIRASFERFHRTQSATAAKICQVASNTLP*
Ga0070670_1007759942	3300005331	Switchgrass Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKMCAIASNTLP*
Ga0066388_1003209465	3300005332	Tropical Forest Soil	MIEFKPRFFVLPVIALTVLAMLHPADGGRSADCGGLRSADPGIRASFARFHATQSAAAAKICRVAANTLP*
Ga0070660_1012562012	3300005339	Corn Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFA
Ga0070689_1018046511	3300005340	Switchgrass Rhizosphere	MIEFKPRYFVLPAIAIAVLTMLHPASGGRATQDACAVPTRDPGIRASFETFSRGQSETAAKVCALASNNR*
Ga0070689_1018865622	3300005340	Switchgrass Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKVCAIAGNTLP*
Ga0070687_1008963071	3300005343	Switchgrass Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHAPADGGRAGACAVQMRDPGIRASFASFQRTQSATAA
Ga0070675_1014460901	3300005354	Miscanthus Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHAPADGGRAAQGGCFVQTRDPGIRASFDALRRAQSRTAAKVCAIASNNLP*
Ga0070674_1014329191	3300005356	Miscanthus Rhizosphere	MIEFKPRYFVLPAIAIAVLAMLHPATGGRAAQDGCAVQARDPGIRASFAAFE
Ga0070673_1006704621	3300005364	Switchgrass Rhizosphere	MIEFNPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKMCAIASNTLP*
Ga0070741_105254391	3300005529	Surface Soil	EPPMIEFKPGSFVLPAVALVVLALLHGPADGGRASDCAGLRTADAGIRASFESLHRTQSATAAKICQVASNTLP*
Ga0070741_108283641	3300005529	Surface Soil	MIEFKPGSFVLPAIALVVLALLYGPADGGRASDCGGLRTADAGIRASFENFRRTQSAAAAKICQMASNTLP*
Ga0070684_1000160474	3300005535	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYGPADGGRADDCAGLRTSDAGIRASFERFHRAQSATAAKICQVASNTLP*
Ga0070665_1001720363	3300005548	Switchgrass Rhizosphere	MIEFKPRTFVLPAIASAVLAMLHPADGGRVGACATQSRDPGIAHSFAAFGRGQSETAARVCALASNNH*
Ga0070665_1011991342	3300005548	Switchgrass Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQR
Ga0068856_1007764941	3300005614	Corn Rhizosphere	MIAFKPRFFVLPVIALTVLAMLHPADGGRSADCGGVRSADRGIRASFARFQQTQSAAAAKICRVAANTLP*
Ga0070702_1011344072	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	IALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKVCAIAGNTLP*
Ga0068852_1025916912	3300005616	Corn Rhizosphere	MIEFKPGSFVLPAIALVVLAMLYGPADGGRADDCAGLRTSDAGIRASFERFHRTQSATAAKICQVASNTLP*
Ga0068859_1008443302	3300005617	Switchgrass Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHAPADGGRAAQGGCFVQTRDPGIRASFDALRRAQSRTAAKVCAIASNLP*
Ga0068861_1008093991	3300005719	Switchgrass Rhizosphere	MIEFKPRYFVLPAIAIAVLAMLHPATGGRSAQEGCAVQTRDPGIRASFAAFERQQSSSAARVC
Ga0068863_1003523233	3300005841	Switchgrass Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSA
Ga0068862_1012380062	3300005844	Switchgrass Rhizosphere	MIEFKPRYFVLPAIALMVLAMLHAPADGGRAPQGGCFVQTRDPGIRASFDALRRAQSRTAAKVCAIASNNLP*
Ga0081540_13493291	3300005983	Tabebuia Heterophylla Rhizosphere	FVVWSGERQEPPMIEFTPRFLVLPVIALTVLAMLHPADGGRSTDCGGLRSADPGIRASFARFQETQSATAAKICRVAANTRP*
Ga0081539_100106173	3300005985	Tabebuia Heterophylla Rhizosphere	MIEFKPRFFVLPAIALVVLAMLHPADGGRSPGCGVRSADAGIRASFASFNRSQSPTAAQICRLASNNLP*
Ga0066656_105961553	3300006034	Soil	MIEFKPRFFVLPAIALTVLAMLYAPANGGRAAECGPSVRIADPGIRAS
Ga0079215_106784162	3300006894	Agricultural Soil	MIEFKPRYFVLPAIALTVLAMLHPADGGRASRDACVTQIRDPGVRASFEALPGNQ
Ga0105240_101376025	3300009093	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYGPADGGRADDCAGLRTSDAGIRASFERFHRTQSATAAKICQVASNTLL*
Ga0105245_111665152	3300009098	Miscanthus Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKVCA
Ga0105245_122755952	3300009098	Miscanthus Rhizosphere	MIEFKPRFFVLPAIAVTVLAMLHAPADGGRLGRGECGPAVRIADPGIRASFAAAARRQS
Ga0105247_110537322	3300009101	Switchgrass Rhizosphere	MIEFKPRYFLPPGIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICRAMFHPSHAGVTPAMAA*
Ga0105243_100716501	3300009148	Miscanthus Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHAPADGGRAAQGGCFVQTRDPGIRASFDALRR
Ga0105243_117426531	3300009148	Miscanthus Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHAPADGGRSAQGCAPRVADPAIQASFEAFRRTQSATASKICALANNNLP*
Ga0105243_129316402	3300009148	Miscanthus Rhizosphere	LPAIALTVLAMLHAPADGGRAPQGGCFVQTRDPGIRASFDALRRAQSRTAAKVCAIASNLP*
Ga0105237_101965904	3300009545	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYDPADGGRADDCAGLRTSDAGIRASFERFHRTQSATAAKICQVASNTLP*
Ga0105249_103193851	3300009553	Switchgrass Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHAPADGGRAGACAVQMRDPGIRASFASFQRTQSATAAK
Ga0105340_14408821	3300009610	Soil	RQERHMIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP*
Ga0126310_110791281	3300010044	Serpentine Soil	MNEFKPRYFVLPAIALTVLAMLHAPADGGRAGACTVQMRDAGIRASFAEFQRTQSAAAAKVCAIASNTLP*
Ga0134127_108789192	3300010399	Terrestrial Soil	MIEFKPRYFVLPAIALTVLAMLHPADGGRASRDACVTQIRDPGVRASFEALRGNQSATAAKACAIASNNLP*
Ga0134127_118016901	3300010399	Terrestrial Soil	MIEFKPRYFVLPAIALTVLTMLYVPADGGRSDRCGPEVRIADPGIRASFPAFKRRQ
Ga0134122_130795412	3300010400	Terrestrial Soil	MIEFKPRYFVLPAIALTVLGMLHPADGGRASRDVCVSQIRDPGIRASFAALRGNQSATAAKACAIANNNLP*
Ga0134123_133535562	3300010403	Terrestrial Soil	SGERQERPMIEFKPRYFVLPAIALTVLAMLHPADGGRASRDACVTQIRDPGVRASFEALRGNQSATAAKVCAIASNNLP*
Ga0126350_114547432	3300010880	Boreal Forest Soil	MIEFKPRTFVLPAIALAVLALLHAPADGGRASDCAALRSADAGIRASFQDFQRSQSATAAKICQMASNTLP*
Ga0105246_104247923	3300011119	Miscanthus Rhizosphere	MIDFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP*
Ga0105246_125645771	3300011119	Miscanthus Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAAQGGCFVQTRDPGIRASFDALRRAQSRTAAKVCAIASNNLP*
Ga0150984_1215234901	3300012469	Avena Fatua Rhizosphere	MIEFKPSFFVLPAIALTVLAMLYAPANGGRAAECGPAVRIADPGIRASFAQA*
Ga0157284_103073111	3300012893	Soil	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRPSFASFQRNQSATAAKICAIASNT
Ga0157303_101326051	3300012896	Soil	EFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP*
Ga0157298_101151772	3300012913	Soil	MIEFKPRYFLPPGIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP*
Ga0157297_104064071	3300012914	Soil	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRAS
Ga0137394_105021851	3300012922	Vadose Zone Soil	MIEFKPRYFVLPAIAIAVLTMLHPASGGRATQGACAVQIRDPGIRASFETFSRGQSETAAKVCALASNNR*
Ga0164308_106057141	3300012985	Soil	MAKMIEFKPRYFVLPAIALTVLAMLYVPADGGRATDCGPAVRISDPGIRASFAEA
Ga0164308_115645601	3300012985	Soil	ERHMIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKMCAIASNTLP*
Ga0157375_109893612	3300013308	Miscanthus Rhizosphere	MIEFKPRYFVLPAIAIAVLAMLHPATGGRSAQEGCAVQTRDPGIRASFAAFERQQSSSAARVCAAHANTVR*
Ga0157375_119862672	3300013308	Miscanthus Rhizosphere	MIEFKPRYFVLPAIAVAVLAMLHPASGGRSVPDACAVQARDPGIARSFEKFSRGQSETAAKVCAFASNNH*
Ga0157380_101794151	3300014326	Switchgrass Rhizosphere	MIEFKPRYFVLPAIAVAVLAMLHPASGGRSVPDACAVQTRDPGIARSFEKFNRGQSETAAKICAFASNNH*
Ga0157380_113054582	3300014326	Switchgrass Rhizosphere	MIEFRPRFFVLPAIAVTVLAMLHAPADGGRAAQGGCFVQTRDPGIRASFDALRRAQSRTAAKVCAIASNNLP*
Ga0157380_117253111	3300014326	Switchgrass Rhizosphere	PAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP*
Ga0157379_115822631	3300014968	Switchgrass Rhizosphere	MIEFKPRFFVLPAIAVTVLAMLHAPADGGRLGRGECGPAVRIADPGIR
Ga0137403_105999942	3300015264	Vadose Zone Soil	MIEFMPRSFVLPAIALAVLAMLHGPADGGRSGDCGVVRSADPGIRASFQSFHRNQSVTGAKI*
Ga0190266_100278363	3300017965	Soil	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP
Ga0184604_101011172	3300018000	Groundwater Sediment	MIEFKPRYFVLPAIAIAVLTMLHPASGGRATQGACAVQTRDPGIRASFETFSRGQSETAAKVCALASNNR
Ga0184635_100110624	3300018072	Groundwater Sediment	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKMCAIASNTLP
Ga0184625_100235097	3300018081	Groundwater Sediment	PPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTLP
Ga0184625_100818861	3300018081	Groundwater Sediment	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASF
Ga0190265_119179332	3300018422	Soil	MIEFKPRYFVLPAIALTVLAMLHPADGGRASRDACVTQIRDPGVRVSFEAFRGNQSATAAKACAMANNNLP
Ga0190272_123409572	3300018429	Soil	MIEFKPRYFVLPAIAIAVLAMLHPAASGRTAQQDACMVQTRDPGLRASFARFADTQSQTAAKVCALASNTIR
Ga0066655_111390151	3300018431	Grasslands Soil	MLEFKPRVFVLPAIAMTVLAMLHAPADGGRSAHEQCGPAMRIADSGIRPSFAAASRRQ
Ga0190275_109216512	3300018432	Soil	MIEFKPRYFVLPAIAIAVLTMLHPASGSRATQGACAAQIRDPGIRASFETFSKGQSETAAKICALANNNR
Ga0066667_117175491	3300018433	Grasslands Soil	MIEFKLRSFVLPAIALAVLAMLHGPADGGRSGDCGLVRSADPGIRASFQSFHRNQSATAGKICQLASNTLP
Ga0066662_113569611	3300018468	Grasslands Soil	MVEFKPRFFVVPAIALTVLAMLHAPADGGRSAQEQCGPVLRVADPGIRASFAAAARRESQ
Ga0190274_107309822	3300018476	Soil	MIELKPRFFVLPAIALTMLAMLYAPANGGRAGECGPAMRIADAGIRASFAEAERR
Ga0066669_110640641	3300018482	Grasslands Soil	MIEFKPRFFVLPAIALTVLAMLHAPADGGRVRHGACTGAHVADRGIRASFGDLRGTK
Ga0173479_102484401	3300019362	Soil	MIEFKPRFFVLPAIALSVLAMLYAPANGGHAGGCGPAVRIADPGIRASF
Ga0193717_10129397	3300020060	Soil	MIEFKPRYFVLPAIAIAVLTMLHPASGGRATQGACAVQTRDPDIRASFETFSRGQSETAAKVCALASNNR
Ga0210380_101078452	3300021082	Groundwater Sediment	MIEFRPRYFVLPAIAIAVLAMLHPASSGRAVQDACAVQMRDPGIRASFAAFERQQSSSAAKVCAVHANTVR
Ga0210400_106901511	3300021170	Soil	MIEFKPRYFVLPAIALMVLAMLHGPADGGRSGDCGAVRSADPGIRASFQNFHDTQSAAAAKLCRVANNNLP
Ga0193706_11093052	3300021339	Soil	PMIEFKPRYFVLPAIAIAVLTMLHPASGGRATQGACAVQTRDPGIRASFETFSRGQSETAAKICALANNNR
Ga0213876_101744042	3300021384	Plant Roots	MIELKPGSFVLPAIALVVLALLHGPADGGRASDCAGLRTADAGIRASFEAFHRTQSATAARICQVASNTLP
Ga0222622_104081681	3300022756	Groundwater Sediment	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFAS
Ga0207710_100115837	3300025900	Switchgrass Rhizosphere	MIEFKPRYFVLPAIALTVLAMCMPRPMAGGAGACAVQMRDPGIRASFASFQRTQSATAAKVCAIAGNTLP
Ga0207688_104495943	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MIEFKPRFFVLPAIALSVLAMLYAPANGGHAGGCGPAVRIADPGI
Ga0207645_100746654	3300025907	Miscanthus Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKVCAIAGNTLP
Ga0207707_109664511	3300025912	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYGPADGGRADDCAGLRTADAGIRASFERFHRAQSATAA
Ga0207695_104054081	3300025913	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYGPADGGRADDCAGLRTSDAGIRASFERFHRTQSATAAKICQVASNTLP
Ga0207662_109339461	3300025918	Switchgrass Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHAPADGGRSAQGCAPRVADPAIQASFEAFRRTQSATASKICALANNNLP
Ga0207694_100317417	3300025924	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYGPADGGRADDCAGLRTADAGIRASFERFHRAQSATAAKICQVASNTLP
Ga0207644_105248701	3300025931	Switchgrass Rhizosphere	MIEFKPRFFVLPAIALSVLAMLYAPANGGHAGGCGPAVRIADPGIRASFAKME
Ga0207709_100735244	3300025935	Miscanthus Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTPSAT
Ga0207670_112422581	3300025936	Switchgrass Rhizosphere	KPRYFVLPAIAIAVLTMLHPASGGRATQDACAVPTRDPGIRASFETFSRGQSETAAKVCALASNNR
Ga0207669_1000567310	3300025937	Miscanthus Rhizosphere	MIEFKPRYFLPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQ
Ga0207669_112676912	3300025937	Miscanthus Rhizosphere	LPPAIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKICAIASNTL
Ga0207679_119833721	3300025945	Corn Rhizosphere	MIEFKPRYFVLPAIALTVLAMLHVPADGGRSAQGCGTRIADPAIQASFAAFSRTQSATARKICALANNNVP
Ga0207639_101175501	3300026041	Corn Rhizosphere	MIEFKPRSFVLPAIALVVLAMLYGPADGGRADDCAGLRTSDAGIRASFERFHRAQSATAAKICQVASNTLP
Ga0207674_119128892	3300026116	Corn Rhizosphere	ALMVLAMLHAPADGGRAPQGGCFVQTRDPGIRASFDALRRAQSRTAAKVCAIASNNLP
Ga0179593_10787831	3300026555	Vadose Zone Soil	VLPAIALAVLATLHGPADGGHSGGCGAVRSADPGIRASFQSFHRNQSATAAKICQLASNNLP
Ga0209486_108275902	3300027886	Agricultural Soil	MIEFKPRYFVLPAIALTVLAMLHPADGGHASRDACVTQIRDPGVRASFEALRGNQSA
Ga0268266_102230172	3300028379	Switchgrass Rhizosphere	MIEFKPRTFVLPAIASAVLAMLHPADGGRVGACATQSRDPGIAHSFAAFGRGQSETAARVCALASNNH
Ga0307286_100261972	3300028876	Soil	MIEFKPRYFLPPGIALTVLAMLHAPADGGRAGACAAQMRDPGIRASFASFQRTQSATAAKVCAIASNTLP
Ga0307468_1003636702	3300031740	Hardwood Forest Soil	MIEFKPRYFVLPAIALTVLAMLHAPADGGRAASGACAVQVRDAGIRASFAAFQRTQSATA
Ga0335082_100552154	3300032782	Soil	MIEFKPRYFVLPVIALTVLAMLHPADGGQSADCGGLRSADPGIRASFARFHQTQSAAAAKICRVAANTLP
Ga0370498_109162_297_521	3300034155	Untreated Peat Soil	MSVMIEFKPRYFVLPAIAIAVLAMLHPASSGRALQDACAVQTRDPGIRASFANFERQQSSSAAKVCAVHANTVR
Ga0370498_169751_3_176	3300034155	Untreated Peat Soil	MIEFKPRFFVLPAIALTVLAMLYAPANGGRAGECGPAVSIADPGIRASFVKAERRQSA
Ga0370506_063027_2_196	3300034157	Untreated Peat Soil	FVLPAIALTVFAMLHLADGGRAATPCGMHSSDPGIRASFANFKRTQSTTAVRACALAANNLSEH
Ga0370495_0066427_1_126	3300034257	Untreated Peat Soil	MIEFKPRYFVLPAIAIAVLAMLHPASSGRAVQDACAVQTRDP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082241

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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