NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F082225

Metagenome Family F082225

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F082225
Family Type Metagenome
Number of Sequences 113
Average Sequence Length 37 residues
Representative Sequence MLDGDKKIFMTITLNFYIVVNKSYLYNYSEKITV
Number of Associated Samples 8
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.80 %
% of genes near scaffold ends (potentially truncated) 23.01 %
% of genes from short scaffolds (< 2000 bps) 46.02 %
Associated GOLD sequencing projects 6
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.097 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules
(83.186 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(100.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.61%    β-sheet: 0.00%    Coil/Unstructured: 48.39%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF07727RVT_2 2.65
PF00078RVT_1 1.77
PF00400WD40 1.77
PF13963Transpos_assoc 1.77
PF00150Cellulase 0.88
PF01490Aa_trans 0.88
PF00348polyprenyl_synt 0.88
PF06426SATase_N 0.88
PF13456RVT_3 0.88
PF01504PIP5K 0.88
PF03514GRAS 0.88
PF00665rve 0.88
PF02892zf-BED 0.88
PF16561AMPK1_CBM 0.88
PF00514Arm 0.88
PF03108DBD_Tnp_Mut 0.88
PF08284RVP_2 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG0142Geranylgeranyl pyrophosphate synthaseCoenzyme transport and metabolism [H] 0.88
COG0531Serine transporter YbeC, amino acid:H+ symporter familyAmino acid transport and metabolism [E] 0.88
COG0814Amino acid permeaseAmino acid transport and metabolism [E] 0.88
COG1045Serine acetyltransferaseAmino acid transport and metabolism [E] 0.88
COG2730Aryl-phospho-beta-D-glucosidase BglC, GH1 familyCarbohydrate transport and metabolism [G] 0.88
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.88
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.88
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.88
COG3934Endo-1,4-beta-mannosidaseCarbohydrate transport and metabolism [G] 0.88
COG4584TransposaseMobilome: prophages, transposons [X] 0.88


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A53.10 %
All OrganismsrootAll Organisms46.90 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300006943|Ga0099822_1000165All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae47464Open in IMG/M
3300006943|Ga0099822_1000321All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna41131Open in IMG/M
3300006943|Ga0099822_1000375All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta39327Open in IMG/M
3300006943|Ga0099822_1002270All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta23798Open in IMG/M
3300006943|Ga0099822_1003091All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata21184Open in IMG/M
3300006943|Ga0099822_1004041All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta19001Open in IMG/M
3300006943|Ga0099822_1005534All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae16499Open in IMG/M
3300006943|Ga0099822_1007856All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata13716Open in IMG/M
3300006943|Ga0099822_1011192All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta10984Open in IMG/M
3300006943|Ga0099822_1011506All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata10768Open in IMG/M
3300006943|Ga0099822_1011561All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata10740Open in IMG/M
3300006943|Ga0099822_1014186All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta9207Open in IMG/M
3300006943|Ga0099822_1015036All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta8767Open in IMG/M
3300006943|Ga0099822_1016227All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta8213Open in IMG/M
3300006943|Ga0099822_1017198All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata7777Open in IMG/M
3300006943|Ga0099822_1017475All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Mucuna → Mucuna pruriens7655Open in IMG/M
3300006943|Ga0099822_1017896All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta7479Open in IMG/M
3300006943|Ga0099822_1019080Not Available7040Open in IMG/M
3300006943|Ga0099822_1024103All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata5500Open in IMG/M
3300006943|Ga0099822_1025716Not Available5075Open in IMG/M
3300006943|Ga0099822_1032590All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata3688Open in IMG/M
3300006943|Ga0099822_1032614All Organisms → Viruses → Predicted Viral3684Open in IMG/M
3300006943|Ga0099822_1032686All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida3673Open in IMG/M
3300006943|Ga0099822_1033364All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta3555Open in IMG/M
3300006943|Ga0099822_1034090All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata3436Open in IMG/M
3300006943|Ga0099822_1035310All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata3248Open in IMG/M
3300006943|Ga0099822_1036250All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata3111Open in IMG/M
3300006943|Ga0099822_1039028All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata2754Open in IMG/M
3300006943|Ga0099822_1040636All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta2570Open in IMG/M
3300006943|Ga0099822_1041079All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata2518Open in IMG/M
3300006943|Ga0099822_1043883Not Available2246Open in IMG/M
3300006943|Ga0099822_1045711All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata2087Open in IMG/M
3300006943|Ga0099822_1047826Not Available1926Open in IMG/M
3300006943|Ga0099822_1050739All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata1727Open in IMG/M
3300006943|Ga0099822_1054412All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata1521Open in IMG/M
3300006943|Ga0099822_1055481Not Available1471Open in IMG/M
3300006943|Ga0099822_1058325Not Available1349Open in IMG/M
3300006943|Ga0099822_1059487Not Available1301Open in IMG/M
3300006943|Ga0099822_1060433Not Available1267Open in IMG/M
3300006943|Ga0099822_1061190Not Available1240Open in IMG/M
3300006943|Ga0099822_1065539Not Available1105Open in IMG/M
3300006943|Ga0099822_1066081Not Available1090Open in IMG/M
3300006943|Ga0099822_1067705Not Available1047Open in IMG/M
3300006943|Ga0099822_1068259All Organisms → Viruses → Predicted Viral1034Open in IMG/M
3300006943|Ga0099822_1068591All Organisms → Viruses → Predicted Viral1026Open in IMG/M
3300006943|Ga0099822_1068994Not Available1017Open in IMG/M
3300006943|Ga0099822_1072315Not Available944Open in IMG/M
3300006943|Ga0099822_1077079Not Available857Open in IMG/M
3300006943|Ga0099822_1079564Not Available817Open in IMG/M
3300006943|Ga0099822_1081822Not Available785Open in IMG/M
3300006943|Ga0099822_1083485Not Available763Open in IMG/M
3300006943|Ga0099822_1086014Not Available732Open in IMG/M
3300006943|Ga0099822_1086176Not Available730Open in IMG/M
3300006943|Ga0099822_1086567Not Available725Open in IMG/M
3300006943|Ga0099822_1088226Not Available707Open in IMG/M
3300006943|Ga0099822_1089062Not Available698Open in IMG/M
3300006943|Ga0099822_1089987Not Available688Open in IMG/M
3300006943|Ga0099822_1090072Not Available687Open in IMG/M
3300006943|Ga0099822_1090905Not Available678Open in IMG/M
3300006943|Ga0099822_1091911Not Available669Open in IMG/M
3300006943|Ga0099822_1094163Not Available648Open in IMG/M
3300006943|Ga0099822_1095480Not Available637Open in IMG/M
3300006943|Ga0099822_1109419Not Available542Open in IMG/M
3300006943|Ga0099822_1113031Not Available523Open in IMG/M
3300006943|Ga0099822_1114568Not Available515Open in IMG/M
3300006944|Ga0099823_1049133All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata2652Open in IMG/M
3300006944|Ga0099823_1051268Not Available2507Open in IMG/M
3300006944|Ga0099823_1065561Not Available1752Open in IMG/M
3300006944|Ga0099823_1075534Not Available1401Open in IMG/M
3300006944|Ga0099823_1090599Not Available1047Open in IMG/M
3300006944|Ga0099823_1097077Not Available936Open in IMG/M
3300006944|Ga0099823_1113804Not Available734Open in IMG/M
3300006944|Ga0099823_1130904Not Available604Open in IMG/M
3300006944|Ga0099823_1131932Not Available598Open in IMG/M
3300006944|Ga0099823_1136049Not Available575Open in IMG/M
3300006944|Ga0099823_1137646Not Available566Open in IMG/M
3300006944|Ga0099823_1137943Not Available565Open in IMG/M
3300006944|Ga0099823_1144992Not Available531Open in IMG/M
3300021320|Ga0214544_1000091All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae117959Open in IMG/M
3300021320|Ga0214544_1001758All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae45425Open in IMG/M
3300021320|Ga0214544_1002127All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata41760Open in IMG/M
3300021320|Ga0214544_1012350All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta11169Open in IMG/M
3300021320|Ga0214544_1012803All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta10648Open in IMG/M
3300021320|Ga0214544_1013597All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata9749Open in IMG/M
3300021320|Ga0214544_1018182All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata5948Open in IMG/M
3300021320|Ga0214544_1036608Not Available1253Open in IMG/M
3300021321|Ga0214542_1000966All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina56840Open in IMG/M
3300021321|Ga0214542_1001775All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae44656Open in IMG/M
3300021321|Ga0214542_1004087All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata29179Open in IMG/M
3300021321|Ga0214542_1006602All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata20978Open in IMG/M
3300021321|Ga0214542_1025039All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata3205Open in IMG/M
3300021324|Ga0214545_1010905Not Available12870Open in IMG/M
3300021324|Ga0214545_1020568All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata5230Open in IMG/M
3300021324|Ga0214545_1061633Not Available589Open in IMG/M
3300021327|Ga0214543_1017104All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata7247Open in IMG/M
3300021327|Ga0214543_1067520Not Available517Open in IMG/M
3300027296|Ga0209389_1017465All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata6478Open in IMG/M
3300027296|Ga0209389_1026046All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta5078Open in IMG/M
3300027296|Ga0209389_1026430All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta5030Open in IMG/M
3300027296|Ga0209389_1058466All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta2448Open in IMG/M
3300027296|Ga0209389_1075178Not Available1752Open in IMG/M
3300027296|Ga0209389_1119376Not Available746Open in IMG/M
3300027296|Ga0209389_1121383Not Available720Open in IMG/M
3300027296|Ga0209389_1122275Not Available709Open in IMG/M
3300027296|Ga0209389_1125435Not Available669Open in IMG/M
3300027357|Ga0209589_1001281All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta40890Open in IMG/M
3300027357|Ga0209589_1034444Not Available2262Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Root NodulesHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules83.19%
Root NodulesHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules16.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300006943Root nodule microbial communities of legume samples collected from California USA - Cow pea white BWHost-AssociatedOpen in IMG/M
3300006944Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BWHost-AssociatedOpen in IMG/M
3300021320Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3Host-AssociatedOpen in IMG/M
3300021321Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1Host-AssociatedOpen in IMG/M
3300021324Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4Host-AssociatedOpen in IMG/M
3300021327Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2Host-AssociatedOpen in IMG/M
3300027296Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)Host-AssociatedOpen in IMG/M
3300027357Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0099822_1000165173300006943Root NodulesMLDSDKKIFMAITLNFYIVVNKSYLYNYSEKITV*
Ga0099822_1000321363300006943Root NodulesMLDGDTKILMTITLNFYIIMYKRYLYNYSEKLRYD*
Ga0099822_1000375423300006943Root NodulesMLDGDKKIFMAITLNFDIVVNKNYLYNYSEKITV*
Ga0099822_100227093300006943Root NodulesMLDSDKKIFITITLNFYIVINKNYLYNYSEKIKV*
Ga0099822_1003091363300006943Root NodulesMLDGDKQIFMTITLNFDIVVNKSYLYNYSEKFIV*
Ga0099822_1004041243300006943Root NodulesMLDGDKKKFNAIILNFYIIVKKIYLYNYSKKITV*
Ga0099822_100553443300006943Root NodulesVSFELVYMLDGDKKLFMAITLNKSYLYNYSEKITV*
Ga0099822_100785613300006943Root NodulesMLDGDKIIFMTITLNFYIVVNKSYLYNYSEKITV*
Ga0099822_1011192123300006943Root NodulesMLNGDKKKFMAITFNFYIIVNKSYLYNYSEKVTV*
Ga0099822_101150623300006943Root NodulesMLDDDKKNIHDNYIKFYIVVNKCHLYNYSEKITV**
Ga0099822_1011561213300006943Root NodulesMLDGDRKIFMTITLNFDIVVNKSYLYNYSEKLQYD*
Ga0099822_101418693300006943Root NodulesMFDGDKKIMNITLNFYIIVKKIYLYNYSKKLHYDW*
Ga0099822_1015036103300006943Root NodulesMLDGDKKIFMTMTLNLYIVVNKSYLYNYREKITS*
Ga0099822_101622733300006943Root NodulesMLDGDKKIFIAITLNFYIIVNKSYLYNYSEKIIV*
Ga0099822_1017198123300006943Root NodulesMMLDSDKKIFMTITLKFYIVVNKGYLYNYSEKITV*
Ga0099822_1017475123300006943Root NodulesMLDGDKKKFMAITLNFFIIVNKSYLYNYSKKITL*LIMS*
Ga0099822_1017896103300006943Root NodulesMLNGDKKIFTKITLNFYILVNKSYLYNYSEKITV*
Ga0099822_101908033300006943Root NodulesMLGGDKKKIITITFNYYIIVNKFYLYNYSDKITHMIMG*
Ga0099822_102184623300006943Root NodulesMLDGDKKIMAITLNFYTIVNKIDLDNYSDKITVD*
Ga0099822_102373823300006943Root NodulesMLDGDKKIFMAITLKFYIVVIKIYLYSYSEKITV*
Ga0099822_102410323300006943Root NodulesMLDGDKKIFMTITLNFYIVVNKICLYNCSEKITV*
Ga0099822_102571633300006943Root NodulesMLDDDKRIFMAITLNFYIIVNKSYLFNYSEKITV*LIMS*
Ga0099822_103259053300006943Root NodulesMLHILDGDKKIFIGITFHFYMVVNRSYLYNYSEKIIV*
Ga0099822_103261423300006943Root NodulesMLDGDKKKFMTITINFYIVVNKSYLYNYSKKITV*
Ga0099822_103268623300006943Root NodulesMLDGDKKIFIIITLNFYIVVNKSYLYNYSEKIIV*
Ga0099822_103336473300006943Root NodulesMLDGDKKIFMAITLNFDIVVNESYSYNYSEKITI*
Ga0099822_103409023300006943Root NodulesMLDGDKKIFMTITLNFDIVVNKSYLYNYSEKITV*LI*
Ga0099822_103531013300006943Root NodulesMLDGDKKIFMKITLNFDIVVNKSYLYNYSEKITV*LI*
Ga0099822_103625033300006943Root NodulesMLDGDKKIFMTITLNLYIVVNKSYLYNYSEKVTV*
Ga0099822_103650143300006943Root NodulesVLDVDKKRIFMTITLNFYIVVNKNYLYNYSEKITVWLIMS*
Ga0099822_103902853300006943Root NodulesMLDGDKKIFMTITLNFYIVVNKSCYLYNYSEKIMV*
Ga0099822_104063623300006943Root NodulesMLDGDKKIFMTITLNFYIVVNKSYLYKYSEKIIV*
Ga0099822_104107973300006943Root NodulesMLDGDKKIFMTITLNFYIVVNKIYLYNYSKKITV*
Ga0099822_104388333300006943Root NodulesMLDGDKKIFIAITLNFYIVVNKSYLYNYSEKITV*LIIS*
Ga0099822_104571163300006943Root NodulesMLDSDKKKIHAITLNFYIIVNKSYLYNYSEKIIV*
Ga0099822_104782643300006943Root NodulesMLDGGKMKFMAITLNFYIIVNKFYLYNYSDKIIV*
Ga0099822_105073943300006943Root NodulesMLDGDKTKLIAITLNFYIIVNKIYLYSYSDKITV*
Ga0099822_105441213300006943Root NodulesF*TSIMLDGDKKIVMTITLKFYIVVNKSYLYNYSEKIIV*LIMS*
Ga0099822_105548113300006943Root NodulesMLDGDKQIFMTITLNFDIVVNKSYLYNYSEKITV*
Ga0099822_105832513300006943Root NodulesMLDGDKKILMTITLNFYIVVNKSYLYNYSDKITV*LIMS*
Ga0099822_105948713300006943Root NodulesMLDGDKKILITITLNFYIEVNKSYLYNCIGKITV*
Ga0099822_106043313300006943Root NodulesMLDGDKKILMTTTLNFYIVVNKSYLYNYSEKIIV*
Ga0099822_106119013300006943Root NodulesMLDGDKKILMTITLNLYIVVNKSYLYNYSDKITV*
Ga0099822_106553913300006943Root NodulesMLDGDKKIFMTITLNFYIVVNKSYLYNYSENITV*
Ga0099822_106608113300006943Root NodulesMLDGDKKILMTITLNFYIVVNKSYLYNYSEKLTV*
Ga0099822_106770513300006943Root NodulesKKILMTITLNFYIVVNKSYLYNYSEKITV*LIMS*
Ga0099822_106825913300006943Root NodulesMLDGDEKIFMTITLKFYIVVNKSYLYNYSSKITV*
Ga0099822_106859113300006943Root NodulesMLDGDKKILLTITLNFYIVVNKSYLYNYSDKITV*
Ga0099822_106861913300006943Root NodulesMLDGDKKLFMTITLNFYIAVNKSYLYNYSEKIII*
Ga0099822_106899413300006943Root NodulesSCIF*TSIMLDGDKKILMTITLNFYIVVNKSYLYNYSEKVTV*LIMS*
Ga0099822_107231513300006943Root NodulesMLDGDKTIFMTITLNFYIVVNKSYLYNYSKKITV*
Ga0099822_107707913300006943Root NodulesMLDGDKKIFMKITLNFYIVVNKSYLYNYSEKITI*
Ga0099822_107956413300006943Root NodulesMLDGDKKIFMTITLNFYIVVNKSYLYNYSEKITV*
Ga0099822_108182213300006943Root NodulesQYMLDGDKKIFMAITLNFYIVVNKSYLYNYSEKITI*LIMS*
Ga0099822_108348523300006943Root NodulesDLVSFEPIMLDGDKKIFMTITLNFYIVVNKSYLYNYSEKITI*
Ga0099822_108601413300006943Root NodulesMLDGDKKILMTITLNYYIVVNKSYLYNYSEKITV*
Ga0099822_108617613300006943Root NodulesMLDGNKKILMTITLNFYIIVNKSYLYNYSDKIAV*
Ga0099822_108656723300006943Root NodulesMLDGDKKILMTITLNFYIVVNKSYLYNYSEKITV*
Ga0099822_108822623300006943Root NodulesMLDGDKKIFMTIILDFYIVVNKSYLYNYSEKITV*
Ga0099822_108906213300006943Root NodulesMLDGDKKILMTIILNFYIVVNKSYLYNYSEKVTV*
Ga0099822_108998713300006943Root NodulesMLDGDKKILMTITLNFYIIVNKSYLYNYSEKITV*
Ga0099822_109007213300006943Root NodulesMLDGDKKILMTITLNLYIVVSKSYLYNYSDKITV*
Ga0099822_109090513300006943Root NodulesSYIF*TSIMLDGDKKIFMTITLDFYIVVNKSYLYNYSEKITI*
Ga0099822_109191113300006943Root NodulesMLDDDKKILITITLNFYIVVNKSYLYNYSEKIIV*
Ga0099822_109416313300006943Root NodulesF*TSIMLDGDKKIFMTITLDFYIVVNKSYLYNYSEKITV*
Ga0099822_109548013300006943Root NodulesMLDGDKKILMTITLNFYIVVNKSFLYNYSEKIIV*
Ga0099822_110941913300006943Root NodulesMLDSDKKILMTITLNFYIVVNKSYLYNYSEKMTV*
Ga0099822_111303113300006943Root NodulesMLDDDKKIFMTITLNFYIVVNKSYLYNYSEKITV*
Ga0099822_111456813300006943Root NodulesMLDGDKKLLMTIILNFYIVVNKSYLYNYSEKITV*
Ga0099823_104913353300006944Root NodulesSIMLDGDKKIFMTITLNFYIVVNKNYLYNYSEKITV*LIMS*
Ga0099823_105126843300006944Root NodulesMLDGDKNNSWKITLNFYIIVNKIYLYNYSEKIIV*
Ga0099823_106556133300006944Root NodulesYMLDGDKKIFLTITLNFYIVVNKSYLFNYNKKVTV*LIMS*
Ga0099823_107553423300006944Root NodulesMLDGDKKILMTITLNFYIVVNKSYLYNYSEKVTV*
Ga0099823_109059923300006944Root NodulesMLDGDKKIFMTITLNFDIVVNKSYLYNYSEKITV*
Ga0099823_109707723300006944Root NodulesMLDGDKKIFMAIILNFDIVLNKSYLYNYSEKITL*LI*
Ga0099823_111380413300006944Root NodulesNFNIDLVSFEPIMLDDDTKIFMTIILNFYIVLSKSCLYNYSEKLQYD*
Ga0099823_113090423300006944Root NodulesSYIF*TSIMLDGDKKIFMTITLDFYIVVNKSYLYNYSEKITV*
Ga0099823_113193213300006944Root NodulesNIDLVSFEPIMLDGDKKILMTITLNFYIVVNKSYLYNYSEKITV*
Ga0099823_113498013300006944Root NodulesMLDGDKKILMTITLNFYIVVNKNDLYNYSEKIKV*
Ga0099823_113604913300006944Root NodulesIF*TSIMLDGDKKILLTITLNFYIVVNKSYLYNYSDKITV**
Ga0099823_113764623300006944Root NodulesMLDGDKKIFMTITLDFYIVVNKSYLYNYSEKITI*
Ga0099823_113794313300006944Root NodulesKKILMTITLNFYIVVNKSYLYNYSEKVTV*LIMN*
Ga0099823_114499213300006944Root NodulesMLDGDKKIFMIITLNFYIVVNKSYLYNYSEKITV*
Ga0214544_1000091663300021320Root NodulesMLDGDTKILMTITLNFYIIMYKRYLYNYSEKLRYD
Ga0214544_1001758163300021320Root NodulesMLDGDKKIFMSITLNLYIVVNKSYLYNYSEKIIYD
Ga0214544_1002127113300021320Root NodulesMLDGDRKIFMTITLNFDIVVNKSYLYNYSEKLQYD
Ga0214544_100526663300021320Root NodulesMLDVDKKKLMAVTLKFYIIVNQIYLYNYSDKITVX
Ga0214544_101235073300021320Root NodulesMFDGDKKIMNITLNFYIIVKKIYLYNYSKKLHYDW
Ga0214544_101280313300021320Root NodulesMLDGDKQIFMTITLNFDIVVNKSYLYNYSEKITVXLI
Ga0214544_101359783300021320Root NodulesMMLDSDKKIFMTITLKFYIVVNKGYLYNYSEKITV
Ga0214544_101818253300021320Root NodulesMLDGDKKILMTITLNFYIVVNKSYLYNYSEKITVXLIMS
Ga0214544_103660813300021320Root NodulesMLDGDKKILMTITLNFYIVVNKSYLYNYSDKITVXLIMS
Ga0214542_100096613300021321Root NodulesSIMLDGDKKILMTITLNFYIVVNKSYLYNYSDKITV
Ga0214542_1001775273300021321Root NodulesMLDGDKKIFMSITLNLYIVVNKSYLYNYSEKIIYDX
Ga0214542_100408723300021321Root NodulesMLDGDKKIFMTITLNFDIVVNKSYLYNYSEKITVXLI
Ga0214542_100660213300021321Root NodulesMLDGNKKILMTITLNFYIIVNKSYLYNYSDKIAVXLIIS
Ga0214542_102503913300021321Root NodulesMLDGDKKIFMKITLNFDIVVNKSYLYNYSEKITVXLI
Ga0214545_101090513300021324Root NodulesMLDDDKRIFMAITLNFYIIVNKSYLFNYSEKITVXLIMS
Ga0214545_102056823300021324Root NodulesMLHILDGDKKIFIGITFHFYMVVNRSYLYNYSEKIIVXLIMS
Ga0214545_106163313300021324Root NodulesXTSIMLDGDKKILMTITLNFYIVVNKSYLYNYSEKITVXLIIS
Ga0214543_101710443300021327Root NodulesTSIMLDGDKKIVMTITLKFYIVVNKSYLYNYSEKIIVXLIMS
Ga0214543_106752013300021327Root NodulesRSYIFXTSIMLDGDKKIFMTITLDFYIVVNKSYLYNYSEKITV
Ga0209389_101746543300027296Root NodulesMLDVDKKIFMVIILNFSIIANKSYLYNYSEKITVXLIMS
Ga0209389_102604663300027296Root NodulesMLDGDNKNFMAITLNFYIVVNKSYLYNYSKKITIXLTMS
Ga0209389_102643033300027296Root NodulesMLDGDKNIFIAITSNFYIVVNKSCLYNYSEKIIVXLIMS
Ga0209389_105846623300027296Root NodulesMLDGDKKIFIAITLNFYIIVNKSYLYNYSEKIIVXLIMS
Ga0209389_107517823300027296Root NodulesYMLDGDKKIFLTITLNFYIVVNKSYLFNYNKKVTVXLIMS
Ga0209389_111937613300027296Root NodulesTSIMLDGDKKIFMTITLNFYIVVNKFYLYNYSKKITL
Ga0209389_112138313300027296Root NodulesGDKKIVMTITLKFYIVVNKSYLYNYSEKIIVXLIMS
Ga0209389_112227513300027296Root NodulesTSIMLDGDKKILMTITLNFYIVVNKSYLYNYSEKITVXLIMS
Ga0209389_112543513300027296Root NodulesTSIMLNGDKKILMTITLNFYIVVNKSYLYNYSEKNKK
Ga0209589_100128113300027357Root NodulesMLDGDKKIFMAIILNFDIVLNKSYLYNYSEKITLXLI
Ga0209589_103444413300027357Root NodulesIFXTSIMLDGDKKIFMTITLDFYIVVNKSYLYNYSEKITV


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