Basic Information | |
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Family ID | F082188 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 50 residues |
Representative Sequence | MSSMQIQQVLAEMRSLQARASGVAETPAAGAQPSDFANLMKNSVDQ |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 59.29 % |
% of genes near scaffold ends (potentially truncated) | 99.12 % |
% of genes from short scaffolds (< 2000 bps) | 92.92 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.35 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (64.602 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.159 % of family members) |
Environment Ontology (ENVO) | Unclassified (24.779 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (46.903 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 41.89% β-sheet: 0.00% Coil/Unstructured: 58.11% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.35 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Peatland Watersheds Soil Vadose Zone Soil Surface Soil Peatlands Soil Permafrost Soil Grasslands Soil Soil Forest Soil Hardwood Forest Soil Soil Untreated Peat Soil Tropical Peatland Permafrost Soil Fen Bog Soil Permafrost Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Fen Palsa Bog Peat Soil Host-Associated Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12635J15846_108577232 | 3300001593 | Forest Soil | MSSMQIQQVLAEMRSLQARASGAAETPTIGAQPSDFANLMKSSVDQVSTMQNQAAALAGD |
Ga0062385_113046281 | 3300004080 | Bog Forest Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSDFANLLKNS |
Ga0062384_1006992442 | 3300004082 | Bog Forest Soil | MSSMQIQQVLAEMRSLQARASGIAETPMAAAQPSDFANLMKNSVDHIATMQNQATAL |
Ga0062384_1012539711 | 3300004082 | Bog Forest Soil | MSSLQINQVLAEMRALQARAGGIAESPAAAAQPSDFARLMQDSVNHIA |
Ga0062387_1005248372 | 3300004091 | Bog Forest Soil | MSSMQIQQVLAEMRSLQARASGVAESPTVGTQPSDFANLMKDSV |
Ga0062387_1014456781 | 3300004091 | Bog Forest Soil | MSNMQITQVLAEMRALQARAEGVAPRAAAPLSTATAQPMDFANLMKGTVDRIATMQNQATALADS |
Ga0062389_1004345911 | 3300004092 | Bog Forest Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSDFANLLKNSVDQISTMHNQATALAD |
Ga0062389_1030990401 | 3300004092 | Bog Forest Soil | MSNMQITQVLAEMRALQARAEGVAPRAAAPLSTATAQPMDFANLMKGTVDRIATMQNQATALADSYEAGDKSVD |
Ga0062389_1033848952 | 3300004092 | Bog Forest Soil | MSSMQIQQVLAEMRSLQARASGIAETPMAAAQPSDFANLMKNSVDHIATMQ |
Ga0070731_105479822 | 3300005538 | Surface Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSEFANLLKNSVDHVAGMQNQATAL |
Ga0070696_1005530491 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MSSMQIQQVLAEMRSLQARASGVAEAPAVGAQPSDFANLMKNSVDHIATMQNQATALA |
Ga0070762_101522392 | 3300005602 | Soil | MSSMQIQQVLAEMRSLQARVSGAPEAPAAGAQPSDFANLMKSAVDQIATMQNQAN |
Ga0070763_100805552 | 3300005610 | Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSDFANLLKNSVEQVSSMHNQATALANAYEGG |
Ga0075028_1007471711 | 3300006050 | Watersheds | MSSMQIQQVLAEMRSLQARTSGAAETPAMGAQPSDFANLMKSSVDHIA |
Ga0075019_102257242 | 3300006086 | Watersheds | MQIQQVLAEMRSLQARASGVAETPMAAAQPSDFANLMKDSVDHIATMQNQATALANAYE |
Ga0099793_104616132 | 3300007258 | Vadose Zone Soil | MSSMQIQQVLAEMRSLQARASGVAQPPAAGAQPSDFASLMKNSVDRIATMQNQA |
Ga0104322_1327493 | 3300007819 | Permafrost Soil | MSSLQIQQVLAEMRSLQARASGAAEAPVAGVSATGAQPTDFANLLKGAVDQIA |
Ga0116229_102175293 | 3300009500 | Host-Associated | MSTLQIQQVLAQMRALQARASGAAPETAAATAQPSDFAS |
Ga0116229_110394011 | 3300009500 | Host-Associated | MSSMQIQQVLAEMRALQARASGASGAATDATAAGAQSVDFASLMKSSVDQISTMQNQ |
Ga0116122_11723531 | 3300009639 | Peatland | MQIQQVLAEMRALQARAMGGSGENASSSVSGTAQPSDFANLLKNSVDHIATMQNQ |
Ga0105857_12309892 | 3300009650 | Permafrost Soil | MSSMQIQQVLAEMRSLQARASGVAETPTIGAQPSDFANLMKSSVDHVSTMQNQAAALADAYEAGD |
Ga0116216_106605782 | 3300009698 | Peatlands Soil | MSSIQISQVLAEMRALQARASGTQTEAPQSIAEPSDFANMMKNQVD |
Ga0116227_107255382 | 3300009709 | Host-Associated | MSSLQIQQVLAEMRALQARASGAPAAAAPAGGVPPTDFASLLKGTVDNIATMQNQATSLAQAYEA |
Ga0116227_113788562 | 3300009709 | Host-Associated | MSSMQIQQVLAEMRSLQSRVSGLGELPTPNLSATDAAQPTDFASLLKNSMDHIASMQN |
Ga0116101_10023723 | 3300009759 | Peatland | MSSVQISQVLAEMRALQARASGVQAEAPQSAGEPSEFANRMKGQGDSVARMQNSAQALANSYEAGEKSVD |
Ga0116226_100536094 | 3300009787 | Host-Associated | MSSMQIQEVLSEMRALQARVSGVTSETASAEQPSDFAALLKNSMD |
Ga0116226_101538033 | 3300009787 | Host-Associated | MSSMQIQQVLAEMRALQARASGAATEPSGAGAIGAGAQAVDFASLMKNSV |
Ga0126359_13622432 | 3300010869 | Boreal Forest Soil | MSSMQIQQVLAEMRSLQARASGAAETPAMGAQPSDFANLMKSSVDHIATMQNQATALADAYEAGD |
Ga0126356_101982251 | 3300010877 | Boreal Forest Soil | MSSMQIQQVLSEMRALQARASGIAPEPAALVSQPSDFAHLMKTSIDGVATM |
Ga0137392_104547341 | 3300011269 | Vadose Zone Soil | MSSMQIQQVLAEMRSLQARASGVAQPPAAGAQPSDFANLMKNSVDRIATMQNQAT |
Ga0137358_101965882 | 3300012582 | Vadose Zone Soil | MSSMQIQQVLAEMRSLQARASGVAQPPAAGAQPSDFA |
Ga0137394_110444152 | 3300012922 | Vadose Zone Soil | MSSMQIQQVLSEMRALQARASGIAPEPAALVSQPSDFAHLMKTS |
Ga0137419_111064371 | 3300012925 | Vadose Zone Soil | MSSMQIQQVLAEMRSLQARASGVAEKPATGAQPSDFASLMKNSIDRIATMQNQATA |
Ga0181521_103193761 | 3300014158 | Bog | MSSIQISQVLAEMRALQARASGTQTEAPQSIAEPSDFANMMKNQVDNVAK |
Ga0182010_103867121 | 3300014490 | Fen | MQIQQVLAEMRALQARALGPPAETASAAAGAQPSDFANLLKNSVDQISTMQNQATSM |
Ga0182013_104163982 | 3300014492 | Bog | MSSMQIQQVLAEMRSLQARASGIAETPAAIEQPSDFANLMKNSVDHIATMQNQAT |
Ga0182019_112180251 | 3300014498 | Fen | MSSLQIQQVLAEMRSLQARASGVTESPVAAAQPSDFANLMKNSIDHVAAMQNQA |
Ga0182024_117387751 | 3300014501 | Permafrost | MQIQQVLAEMRSLQARASGVAEAPTATAQPSDFANLMKNSVDQVASMQNQATA |
Ga0181519_105414011 | 3300014658 | Bog | MSSLQISQVLAEMRSLQARAAGAAPPPPAAATATA |
Ga0182030_110507461 | 3300014838 | Bog | MQIQQVLSEMRALQARASGASGENAAIPTSSAQPSDFANLMKSSVDQISTM |
Ga0137414_10077392 | 3300015051 | Vadose Zone Soil | MSSMQITQVLAEMRALQARASGISEAPAYGSAPSAASAQPSAFANLMKGSVDSVA |
Ga0137418_107743831 | 3300015241 | Vadose Zone Soil | MSSMQITQVLAEMRALQARASGIAEPPAMAAQPSEF |
Ga0137409_113119831 | 3300015245 | Vadose Zone Soil | MSSMQIQQVLSEMRALQARASGIAPEPAALSAQPSDFANLMKTSIDGVATMQN |
Ga0187781_110122141 | 3300017972 | Tropical Peatland | MQIQQVLAEMRALQARAMGPSPEAPATAAAGAQPTDFARLLK |
Ga0187881_104328941 | 3300018024 | Peatland | MSSMQIQQVLAEMRALQARAMGGSGENASSSVSGTAQPSDFANLLKNS |
Ga0187863_107612782 | 3300018034 | Peatland | MSSMQIQQVLAEMRSLQARASGAPETPAIGAQPSDFANLMKNSVDQ |
Ga0187883_100219481 | 3300018037 | Peatland | MSSLQIQQVLAEMRSLQARAAGAPTDITPSSAQPTDFAALLKNSVDNIASMQNQ |
Ga0187887_102953262 | 3300018043 | Peatland | MSSMQIAQVLEQMRALQARTSGIAADAPQSAAQPSDFAQLLKSSVDQLSTMQNQATALAD |
Ga0187859_108402892 | 3300018047 | Peatland | MSSMQIQQVLSEMRALQARASGVSSEIAPSGVQPTDFADLMKNSVDHIASMQNQAT |
Ga0182031_13740331 | 3300019787 | Bog | MQIQQVLSEMRALQARASGAPEPSTPSAAQPADFAELMKSSV |
Ga0193727_10006531 | 3300019886 | Soil | MQITQVLAEMRALQARASGISEAPAYGSAPSAASAQPSAFA |
Ga0193729_11882832 | 3300019887 | Soil | MSSMQIQQVLSEMRALQARATGIAPEPAALSAQPSDFANLMKTSINGVATMQNQATALAN |
Ga0193718_10975062 | 3300019999 | Soil | MSSMQIQQVLAEMRSLQARASGVGETPTPAAGAQPSDFAN |
Ga0210403_108055982 | 3300020580 | Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSDFANLMKNSVDHVA |
Ga0210399_108371691 | 3300020581 | Soil | MSSMQIQQVLAEMRSLQARASGIAEPAGTAAQPSDFANLMKNSIDHVAAMQNQATS |
Ga0210406_102305911 | 3300021168 | Soil | MSSMQISQVLAEMRALQARASGISGAPAAAAQPSDFANLMKNSVDHVAGMQNQATALAN |
Ga0210406_103534901 | 3300021168 | Soil | MSSMQIQQVLAEMRSLQARASGVAEAPIAAGAPPSDFANLMKNSIDHISTMQNQATALADAYEAGD |
Ga0210388_106106021 | 3300021181 | Soil | MSSMQISQVLAEMRALQARASGISEAPAPAAQPSDFANLMKNSVDHIASMQNQ |
Ga0210389_115630782 | 3300021404 | Soil | MSSMQISQVLAEMRALQARASGISEAPAPAAQPSDFANLMKNSVDH |
Ga0210383_111846601 | 3300021407 | Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSDFAN |
Ga0210390_103263661 | 3300021474 | Soil | MSSMQINQVLAEMRALQARAGGAAEAPAAAAQPSDFANLMKDS |
Ga0210390_108840072 | 3300021474 | Soil | MQISQVLAEMRALQARASGISEAPAATAQPSEFANL |
Ga0210392_100890631 | 3300021475 | Soil | MSSMQIQQVLAEMRSLQARASGAAETPAMGAQPSDFANLMKSSVDHIATMQN |
Ga0210392_104074261 | 3300021475 | Soil | MSSMQIQQVLAEMRALQARASGGVEPQAAGAQPTDFARLLKGA |
Ga0210402_102060023 | 3300021478 | Soil | MSSMQIQQVLSEMRALQARAGGLAPEPAALSAQPSDFANLMKTS |
Ga0210402_106100152 | 3300021478 | Soil | MRALQARASGIAPEPAALVSQPSDFANLMKTSIDGVATMQNQATALAN |
Ga0210410_105113002 | 3300021479 | Soil | MQIQQVLAEMRSLQARASGVAETPMAAAQPSDFANLMKDS |
Ga0210410_107988702 | 3300021479 | Soil | MSSMQIQQVLAEMRSLHARASGIAESPGAAAQPSDFANLMKNSIDHVAAMQNQATSL |
Ga0179589_102044302 | 3300024288 | Vadose Zone Soil | MSSMQIQQVLAEMRSLQARASGVAETPVAGAPPSD |
Ga0224556_10839492 | 3300024295 | Soil | MSSLQIQQVLAEMRSLQARAAGAPTDITPSSAQPTDFAALLKNSVDNIASM |
Ga0209849_10123202 | 3300026215 | Soil | MQIQQVLAEMRSLQARASGVAETPAAAAQPSDFANLMKNSIDHI |
Ga0209131_11400512 | 3300026320 | Grasslands Soil | MSSMQIQQVLAEMRSLQARASGVAQPPAAGAQPSDFASLMKNSVDRIATM |
Ga0208238_10182641 | 3300027072 | Forest Soil | MSSMQIQQVLAEMRSLQARVSGAAEAPAAGAQPSDFA |
Ga0209655_100901082 | 3300027767 | Bog Forest Soil | MSSLQINQVLAEMRALQARAGGIAESPAAAAQPSDFARLMQDSVNHIAG |
Ga0209139_100620292 | 3300027795 | Bog Forest Soil | MQIQQVLAEMRSLQARASGVAETPSVAAQPSDFANLMKNSIDQVAGMQNQATALANAYE |
Ga0209139_100643311 | 3300027795 | Bog Forest Soil | MSSMQINQVLAQMRALQARAEGVSVAPQSAVTAQPTDFASLMK |
Ga0209208_100595561 | 3300027807 | Host-Associated | MSSMQIQQVLAEMRALQARASGAASGAATETGAAGAQ |
Ga0209112_100708652 | 3300027817 | Forest Soil | MSSMQISQVLAEMRALQARASGISHAPAPAAQPSDF |
Ga0209275_102709212 | 3300027884 | Soil | MSSMQIQQVLAEMRSLQARASGVAETPMAAAQPSDFANLMKDSVDHVASMQNQATALA |
Ga0209488_108045882 | 3300027903 | Vadose Zone Soil | MQIQQVLSEMRALQARASGIAPEPAALSAQPSDFANLM |
Ga0209698_107349701 | 3300027911 | Watersheds | MSSMQIQQVLAEMRALQARASGHAAEAMAPAVQPADFANLLKSSVDGVATM |
Ga0308309_108214991 | 3300028906 | Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSDFANLMKNSVDHVAGMQN |
Ga0311327_102533621 | 3300029883 | Bog | MSSLQISQVLAEMRALQARASGASTEAAAPSTTEPSDFAN |
Ga0311343_107435742 | 3300029953 | Bog | MSSMQIQQVLAEMRALQSRASGVAEPQVVGAEPSEFANMMKN |
Ga0302150_102239761 | 3300029956 | Bog | MSSMQIQQVLAEMRALQARALGPPAETASAAAGAQPSDFANLLKN |
Ga0311365_119400732 | 3300029989 | Fen | MSSMQIQQVLSEMRALQARASGIAAEPAALTSQPS |
Ga0302304_101915871 | 3300029993 | Palsa | MSSMQISQVLAEMRSLQARASGISEAPAAAAQPSDFANLLKNSVD |
Ga0311339_108380522 | 3300029999 | Palsa | MSSMQIQQVLAEMRSLQARASGVAETPAAGAQPSDFANLMKNSVDQ |
Ga0311339_118131101 | 3300029999 | Palsa | MSSMQIQQVLAEMRSLQARVSGAPEAPAAGAQPSDFANLMKSAV |
Ga0302178_103880531 | 3300030013 | Palsa | MSSMQISQVLAEMRSLQARASGISEAPPAAAQPSDFANLMKNSVDHIASMQNQATA |
Ga0302178_104298641 | 3300030013 | Palsa | MSSIQIQQVLAEMRALQARASGVSDALGSQAPAPGGQPTDFASLLKGTVDHIATMQNQATSLAQAYEA |
Ga0302274_103372001 | 3300030041 | Bog | MSSMQIQQVLAEMRALQARALGPPAETASAAAGAQPSDFA |
Ga0311349_112649782 | 3300030294 | Fen | MRALQARASGIAAEPAALTSQPSEFANLMKTSFNGVATMQNQATALANAYEA |
Ga0311370_104734852 | 3300030503 | Palsa | MSSMQIQQVLAEMRSLQARASGVAESPTVGTQPSDFANLLKDSV |
Ga0311370_112181171 | 3300030503 | Palsa | MSSLQIQQVLAEMRSLQSRVSGVADSVGSAPGAATA |
Ga0302183_101279142 | 3300030509 | Palsa | MSSMQIQQVLAEMRSLQARVSGAPEAPAAGAQPSDFANLMKSAVDQIATMQNQANAMADA |
Ga0302275_102379711 | 3300030518 | Bog | MQIQQVLAEMRSLQARASGVAETPVATAQPSDFANLMKNTVDQVAGMQNQ |
Ga0265461_108028012 | 3300030743 | Soil | MSSMQISQVLAEMRALQARASGISEAPAAAAQPSDFANLMKNSVKKGKEKE |
Ga0265771_10024092 | 3300031010 | Soil | MSSMQISQVLAEMRALQARASGISEAPPAAAQPSDFANLMKNSVDHIASMQNQATALAEA |
Ga0302308_104232611 | 3300031027 | Palsa | MSSMQIQQVLAEMRALQSRASGISPEAASGGAPPADFASLL |
Ga0170834_1091407521 | 3300031057 | Forest Soil | MSSMQISQVLAEMRALQARASGISEAPAASAQPSDFANLMKNSVDHVAGMQNQETALADAFEAKKA |
Ga0170824_1092485052 | 3300031231 | Forest Soil | MASMQIQQVLAEMRSLQARASGVAETPSLAAQPSD |
Ga0310686_1149436951 | 3300031708 | Soil | MSSMQIQQVLAEMRSLQARASGIGETPAAAAQPSDFANLMKNS |
Ga0307474_100966913 | 3300031718 | Hardwood Forest Soil | MSSMQITQVLAEMRALQARASGISEGPASAYAASAATAQPSEFANLMKGSVDSVASMQNHAT |
Ga0302321_1028017142 | 3300031726 | Fen | MSSMQIQQVLSEMRALQARASGLSGTEVATADAQPSDFAS |
Ga0307475_111844361 | 3300031754 | Hardwood Forest Soil | MQIQQVLAEMRSLQARASGVAETPMAAAQPSDFANLMKDSVDHIATMQNQATALAN |
Ga0307478_102941802 | 3300031823 | Hardwood Forest Soil | MSSMQIQQVLAEMRSLQARASGAAETPAMGAQPSDFANLMKSSVDHIATMQNQ |
Ga0307478_105716342 | 3300031823 | Hardwood Forest Soil | MSSMQITQVLAEMRALQARASGIAEAPAASAHPSDFANIM |
Ga0335079_106337272 | 3300032783 | Soil | MSSMQIQQVLAEMRALQARASGSTAETAAGAAQPADFASLLK |
Ga0371489_0236425_745_918 | 3300033755 | Peat Soil | MSSMQIQQVLAEMRALQARAMGGAGENASSSVSSAAQPSDFANLLKNSVDNIATMQNQ |
Ga0370514_026906_2_178 | 3300034199 | Untreated Peat Soil | MSSMQISQVLAEMRSLQARASGISEAPAAAAQPSDFANLLKNSVDQVSSMHNQATALAN |
Ga0370514_135850_450_632 | 3300034199 | Untreated Peat Soil | MSSMQIQQVLTEMRSLQARASGVAEAPTASAQPSDFANLMKNSVDQVASMQNQAAALAES |
Ga0370497_0021573_3_161 | 3300034965 | Untreated Peat Soil | MSSMQIQQVLAEMRSLQARASGVAEAPTVAAQPSDFANLMKNSIDHISTMQNQ |
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