NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F082152

Metagenome / Metatranscriptome Family F082152

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F082152
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 57 residues
Representative Sequence TPGVPVLAKKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT
Number of Associated Samples 92
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 4.55 %
% of genes near scaffold ends (potentially truncated) 97.35 %
% of genes from short scaffolds (< 2000 bps) 97.35 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater
(38.053 % of family members)
Environment Ontology (ENVO) Unclassified
(46.018 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(75.221 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 4.71%    β-sheet: 14.12%    Coil/Unstructured: 81.18%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.21
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004796|Ga0007763_11555729Not Available618Open in IMG/M
3300007600|Ga0102920_1200435Not Available641Open in IMG/M
3300008108|Ga0114341_10536909Not Available519Open in IMG/M
3300008111|Ga0114344_1252862Not Available507Open in IMG/M
3300008261|Ga0114336_1364833Not Available513Open in IMG/M
3300009158|Ga0114977_10672109Not Available553Open in IMG/M
3300009158|Ga0114977_10745100Not Available519Open in IMG/M
3300009159|Ga0114978_10832370Not Available519Open in IMG/M
3300009161|Ga0114966_10774678Not Available519Open in IMG/M
3300009163|Ga0114970_10730013Not Available525Open in IMG/M
3300009182|Ga0114959_10614309Not Available519Open in IMG/M
3300009184|Ga0114976_10675333Not Available519Open in IMG/M
3300009684|Ga0114958_10485348Not Available594Open in IMG/M
3300010354|Ga0129333_11733842Not Available507Open in IMG/M
3300012711|Ga0157607_1049132Not Available548Open in IMG/M
3300012716|Ga0157605_1132143Not Available526Open in IMG/M
3300012722|Ga0157630_1197629Not Available539Open in IMG/M
3300012754|Ga0138278_1061467Not Available525Open in IMG/M
3300012757|Ga0157628_1065639Not Available519Open in IMG/M
3300012768|Ga0138276_1179037Not Available683Open in IMG/M
3300012968|Ga0129337_1117557Not Available513Open in IMG/M
3300013005|Ga0164292_10981777Not Available528Open in IMG/M
3300013295|Ga0170791_13145560Not Available543Open in IMG/M
3300013295|Ga0170791_16096767Not Available528Open in IMG/M
3300016683|Ga0180042_119777Not Available525Open in IMG/M
3300016691|Ga0180055_1113130Not Available507Open in IMG/M
3300016699|Ga0180058_1006012Not Available525Open in IMG/M
3300017788|Ga0169931_10980849Not Available525Open in IMG/M
3300017788|Ga0169931_10988503Not Available522Open in IMG/M
3300020162|Ga0211735_10662719Not Available504Open in IMG/M
3300020162|Ga0211735_10675919Not Available501Open in IMG/M
3300020162|Ga0211735_10676035Not Available501Open in IMG/M
3300020183|Ga0194115_10484775Not Available509Open in IMG/M
3300020220|Ga0194119_10837591Not Available541Open in IMG/M
3300021091|Ga0194133_10614121Not Available523Open in IMG/M
3300021376|Ga0194130_10385067Not Available750Open in IMG/M
3300021376|Ga0194130_10648630Not Available518Open in IMG/M
3300021963|Ga0222712_10793741Not Available523Open in IMG/M
3300024282|Ga0255217_1064580Not Available526Open in IMG/M
3300024483|Ga0255224_1133735Not Available522Open in IMG/M
3300024487|Ga0255222_1075490Not Available514Open in IMG/M
3300024530|Ga0256322_1057764Not Available696Open in IMG/M
3300024533|Ga0256299_1123498Not Available516Open in IMG/M
3300024535|Ga0255303_1117857Not Available522Open in IMG/M
3300024558|Ga0255232_1110430Not Available569Open in IMG/M
3300024558|Ga0255232_1127795Not Available525Open in IMG/M
3300024560|Ga0256306_1092209Not Available712Open in IMG/M
3300024568|Ga0255238_1165160Not Available520Open in IMG/M
3300024850|Ga0255282_1093119Not Available522Open in IMG/M
3300025726|Ga0255258_109497Not Available513Open in IMG/M
3300025733|Ga0255262_107795Not Available525Open in IMG/M
3300025760|Ga0255249_1095645Not Available510Open in IMG/M
3300026410|Ga0256325_1061230Not Available519Open in IMG/M
3300026410|Ga0256325_1061247Not Available519Open in IMG/M
3300026425|Ga0256300_1058908Not Available551Open in IMG/M
3300026569|Ga0255277_1065413Not Available933Open in IMG/M
3300027162|Ga0255212_1089595Not Available520Open in IMG/M
3300027285|Ga0255131_1074231Not Available534Open in IMG/M
3300027293|Ga0255132_1110184Not Available546Open in IMG/M
3300027299|Ga0255124_1084300Not Available532Open in IMG/M
3300027300|Ga0255140_1089427Not Available524Open in IMG/M
3300027306|Ga0255220_1099457Not Available539Open in IMG/M
3300027333|Ga0255138_1085990Not Available517Open in IMG/M
3300027336|Ga0255128_1100894Not Available538Open in IMG/M
3300027336|Ga0255128_1104363Not Available523Open in IMG/M
3300027339|Ga0255210_1109309Not Available502Open in IMG/M
3300027710|Ga0209599_10208304Not Available529Open in IMG/M
3300027736|Ga0209190_1368369Not Available526Open in IMG/M
3300027746|Ga0209597_1377228Not Available523Open in IMG/M
3300027769|Ga0209770_10313445Not Available596Open in IMG/M
3300027770|Ga0209086_10387539Not Available565Open in IMG/M
3300027804|Ga0209358_10557924Not Available511Open in IMG/M
3300027806|Ga0209985_10479311Not Available524Open in IMG/M
3300027892|Ga0209550_10862359Not Available501Open in IMG/M
3300027963|Ga0209400_1371362Not Available523Open in IMG/M
3300028077|Ga0256323_1062283Not Available522Open in IMG/M
3300028077|Ga0256323_1062288Not Available522Open in IMG/M
3300028077|Ga0256323_1062924Not Available519Open in IMG/M
3300028078|Ga0255259_1065964Not Available516Open in IMG/M
3300028081|Ga0255260_1071355Not Available516Open in IMG/M
3300028097|Ga0255261_1034873Not Available818Open in IMG/M
3300028105|Ga0255254_1092132Not Available609Open in IMG/M
3300028113|Ga0255234_1103788Not Available750Open in IMG/M
3300028252|Ga0256360_1055368Not Available525Open in IMG/M
3300028257|Ga0255257_1054298Not Available540Open in IMG/M
3300028257|Ga0255257_1057490Not Available522Open in IMG/M
3300029699|Ga0255233_1122010Not Available519Open in IMG/M
3300031758|Ga0315907_11284386Not Available507Open in IMG/M
3300031784|Ga0315899_10726365Not Available919Open in IMG/M
3300031784|Ga0315899_11382830Not Available597Open in IMG/M
3300031784|Ga0315899_11662173Not Available526Open in IMG/M
3300031786|Ga0315908_11510345Not Available523Open in IMG/M
3300031787|Ga0315900_10796875Not Available652Open in IMG/M
3300031951|Ga0315904_11270854Not Available559Open in IMG/M
3300032050|Ga0315906_11287733Not Available522Open in IMG/M
3300032050|Ga0315906_11301795Not Available518Open in IMG/M
3300032093|Ga0315902_11226174Not Available536Open in IMG/M
3300032093|Ga0315902_11325820Not Available505Open in IMG/M
3300033994|Ga0334996_0535437Not Available516Open in IMG/M
3300034066|Ga0335019_0823857Not Available522Open in IMG/M
3300034094|Ga0335014_0477955Not Available529Open in IMG/M
3300034094|Ga0335014_0477955Not Available529Open in IMG/M
3300034094|Ga0335014_0486354Not Available523Open in IMG/M
3300034103|Ga0335030_0857787Not Available526Open in IMG/M
3300034108|Ga0335050_0467619Not Available547Open in IMG/M
3300034108|Ga0335050_0469825Not Available545Open in IMG/M
3300034116|Ga0335068_0546178Not Available529Open in IMG/M
3300034120|Ga0335056_0671403Not Available528Open in IMG/M
3300034200|Ga0335065_0774263Not Available540Open in IMG/M
3300034272|Ga0335049_0701441Not Available612Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater38.05%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater19.47%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake12.39%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater9.73%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake4.42%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.42%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.42%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton2.65%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.89%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.89%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.89%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.89%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface0.89%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004796Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007600Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3EnvironmentalOpen in IMG/M
3300008108Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NAEnvironmentalOpen in IMG/M
3300008111Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NAEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009182Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009684Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300012711Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES133 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012716Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES130 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012722Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES163 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012754Freshwater microbial communities from Lake Montjoie, Canada - M_130821_M_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012757Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES161 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012768Freshwater microbial communities from Lake Montjoie, Canada - M_130710_M_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012968Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300016683Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES128 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016691Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES124 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016699Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES160 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300021091Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40mEnvironmentalOpen in IMG/M
3300021376Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surfaceEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300024282Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepB_8dEnvironmentalOpen in IMG/M
3300024312Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepA_8dEnvironmentalOpen in IMG/M
3300024483Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024487Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024530Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024533Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024535Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024558Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024560Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024568Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024850Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025726Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025733Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025760Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026410Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026425Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026569Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027162Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8dEnvironmentalOpen in IMG/M
3300027285Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8dEnvironmentalOpen in IMG/M
3300027293Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8dEnvironmentalOpen in IMG/M
3300027299Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8dEnvironmentalOpen in IMG/M
3300027300Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8dEnvironmentalOpen in IMG/M
3300027306Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8dEnvironmentalOpen in IMG/M
3300027333Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8dEnvironmentalOpen in IMG/M
3300027336Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8dEnvironmentalOpen in IMG/M
3300027339Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepA_8dEnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027746Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027804Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027806Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028077Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028078Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028081Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028097Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028105Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028113Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028252Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028257Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029699Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031786Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034094Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077EnvironmentalOpen in IMG/M
3300034103Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119EnvironmentalOpen in IMG/M
3300034108Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034120Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M
3300034272Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0007763_1155572913300004796Freshwater LakePGVPVLEKKPAGYVSVILPPISSLPPAVVVNENVVAADVLPATRSDVAIANEGSVA*
Ga0102920_120043523300007600EstuarinePLICALGDPALAKKPDGYVSVMLLPAASAPPAVVVKVNVAAAELFPATRSDAAIANETSVTWD*
Ga0114341_1053690923300008108Freshwater, PlanktonSGVPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT*
Ga0114344_125286223300008111Freshwater, PlanktonIVTPKVPTEVVKKPDGYVSVMVLLVASAPPKVVVNENVAAAAVFPATRSPVAIVNEGLVG
Ga0114336_136483323300008261Freshwater, PlanktonPLICTLGDPALAKKPDGYVSVMLLPAASAPPAVVVKENVAAVPALPATRSDAAIANEALVT*
Ga0114977_1067210923300009158Freshwater LakeALSKNADGYLSVMLLLVAIAPPSLVVNENVAAADALPATQSDAAIANEAFVT*
Ga0114977_1074510013300009158Freshwater LakeLIDTPGVPVLAKKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT
Ga0114978_1083237023300009159Freshwater LakeAAKKPDGYVSVMVPPVAIAPPAEVVKENVAAAAVLLATRSAGDIEKEVLVT*
Ga0114966_1077467813300009161Freshwater LakeKKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT*
Ga0114970_1073001323300009163Freshwater LakePAPLIDTPGVPVLAKKPDGYVSVMLLPVASAPPAVVVNENVAPADALPATRSDAAIANEALVT*
Ga0114959_1061430913300009182Freshwater LakeKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT*
Ga0114976_1067533323300009184Freshwater LakeLAKKPAGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIPNEALVT*
Ga0114958_1048534823300009684Freshwater LakePGVPDVAKKPDGYVSVMVLLVASAPPAVAVNENVAAADALPATRSDAAIANEALVT*
Ga0129333_1173384223300010354Freshwater To Marine Saline GradientLGDPALAKKPDGYVSVMLLPAASAPPAVVVKENVAAVPALPATRSDAAIANEALVT*
Ga0157607_104913223300012711FreshwaterICTLGDPALAKKPDGYVSVMLLPAASAPPAVVVKANVAAVPALPATRSDAAIANEVLVT*
Ga0157605_113214313300012716FreshwaterGDPALAKKPDGYVSVMLLPAASAPPAVVVKANVAAVPALPATRSDAAIANEVLVT*
Ga0157630_119762913300012722FreshwaterLICTLGDPALAKKPDGYVSVMLLPAASAPPAVVVKANVAAVPALPATRSDAAIANEVLVT
Ga0138278_106146713300012754Freshwater LakeVGGPVPLICTPGVPVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPATRSDADIANEGLVA*
Ga0157628_106563913300012757FreshwaterPLIDTPGVPVLAKKPAGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIPNEALVT*
Ga0138276_117903713300012768Freshwater LakeGVPVAAKKPDGYVCVMLLPTASAPPAVVVNETVAEAPVLPATRSDAAIVNEVLVT*
Ga0129337_111755713300012968AqueousICTLGDPALAKKPDGYVSVMLLPAASAPPAVVVKENVAAVPALPATRSDAAIANEALVT*
Ga0164292_1098177723300013005FreshwaterPPPLIVTSGVPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT*
Ga0170791_1314556013300013295FreshwaterPADSVAVGVAVVAQKPDGYVNVTAVGPAPPAVVVNENVAAADVFPASRSDAAIANNTLVT
Ga0170791_1609676723300013295FreshwaterTSGVPVLEKKPDGYVSVMLLPLASPPPAVVVNENVAAADVFPATRSDAAIANNALVT*
Ga0180042_11977713300016683FreshwaterGGPPPLICTPGVPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSDVAIANKALVT
Ga0180055_111313023300016691FreshwaterPPLICTPGVPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSDVAIANKALVT
Ga0180058_100601213300016699FreshwaterVPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSDVAIANKALVT
Ga0169931_1098084913300017788FreshwaterGVPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSDVAIANKALVT
Ga0169931_1098850323300017788FreshwaterGVPVLEKKPAGYVSVILPPISSLPPAVVVNENVAAADVLPATRSDVAIANEGPVA
Ga0211735_1066271923300020162FreshwaterTSGVPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT
Ga0211735_1067591923300020162FreshwaterEKKLDGYVSVMVPPVASAPPAVAVNENVAAAELLPATRSDVAIANEGLVT
Ga0211735_1067603523300020162FreshwaterEKKPVGYVSVILLPISSLPPAVVVNENVAAADGLPATRSDVAIANEGSVA
Ga0194115_1048477523300020183Freshwater LakeKPAGYVSVILPPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0194119_1083759113300020220Freshwater LakePPLIVTSGVPALEKKPDGYVSVMLLPLASAPPAVVVNENVAAADVFPATRSDAATANNALVT
Ga0194133_1061412113300021091Freshwater LakeEVAKKPDGYVSVMLLPAASAPPAVVLNDKVTAAFVLPATRSDAAIKNEVSVT
Ga0194130_1038506723300021376Freshwater LakeATMVPVVPPLIVTPKVPAEVVKKPDGYVSVIVLLVASAPPAVVVNENVAAAAVFPATRSAVAIVNEGLVG
Ga0194130_1064863023300021376Freshwater LakeVAEVAKKLDGYVSVMLLPAASAPPAVVLNDKVTAAFVLPATRSDAAIKNEVSVT
Ga0222712_1079374123300021963Estuarine WaterLIATPGVPVLEKKPDGYVSVMLLPLASAPPAEVVNDTVAAAGVLPATRSDAAISNEVFVA
Ga0255217_106458023300024282FreshwaterPGVPVLEKKPAGYVSVILPPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0255219_107745223300024312FreshwaterAVNVVLAAEITPVGLPDAAKKPVGYASVMVPPAASSPPALVVNENVAAAPVLPATRSALATANEAPVT
Ga0255224_113373513300024483FreshwaterTPGVPVLEKKPDGYVSVMLLPLASAPPAEVVNDTVAAAGVLPATRSDAAIVNEVIVA
Ga0255222_107549013300024487FreshwaterLICTPGVPVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPAKRSDADIANEGLVA
Ga0256322_105776413300024530FreshwaterKPDGYVSVIVLLVASAPPAVVVNENVAAADALPATRSPVAIVNEGSVG
Ga0256299_112349813300024533FreshwaterPPLTPLIVAAGDPVPEKKPDGYVSVMVLPLESAPPAVVVNEKVAAAELLPATRSDVAIANEGLVT
Ga0255303_111785713300024535FreshwaterLICTPGVPVLEKKPVGYVSVMALPAASAPPAVVVNEKVAAADVLPATRSDADIANEGLVA
Ga0255232_107489123300024558FreshwaterVPPTTPPIDTAGVPVLKKKLGGYVSVMLLPPASAPPAVVLNANVAAAGVFPTKRSAVAIVNEVLVG
Ga0255232_111043023300024558FreshwaterGDPALAKKPDGYVSVMLLPAASAPPAVVVKANVAAVPALPATRSDAAIANEVLVT
Ga0255232_112779513300024558FreshwaterVGGPVPLICTPGVPVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPAKRSDADIANEGLVA
Ga0256306_109220913300024560FreshwaterPLICTPGVPVLEKKPAGYVSVMVLPISSLPPAVVVNENVAAAGVLPATRSDVAIANEGSV
Ga0255238_116516023300024568FreshwaterMGQKKADGYVSVILLPGGSAPPAVVLNENVTVAFVLPATRSDA
Ga0255282_109311913300024850FreshwaterLICTPGVPVLEKKPAGYVSVILPPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0255258_10949713300025726FreshwaterPKVPSAVVKKPDGYVSVIVLLVASAPPAVVVNENVAAAPVLPATRSDVAIPNKALVT
Ga0255262_10779523300025733FreshwaterLIDTPGVPVPAKKPHGYVSVMVLPVASAPPALVVNDTVAAAGVLPATRSDAAISNEVFVT
Ga0255249_109564523300025760FreshwaterVPVLEKKPAGYVSVILPPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0256325_106123013300026410FreshwaterPLIDTPGVPVLAKKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFV
Ga0256325_106124723300026410FreshwaterPLMDAPGVAVAAKKPDGYVSVMVPPVAIAPPAEVVKENVAAAAVLLATRSAGDIEKEVLV
Ga0256300_105890813300026425FreshwaterGPLPLICTPGVPVLEKKPTGYVSVILPPVASAPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0255277_106541313300026569FreshwaterVLEKKLDGYVRVMVPPVASAPPAVVVNENVTAAPVLPATRSPAATANVTDVTAP
Ga0255212_108959523300027162FreshwaterKKPDGYVSVIVLLVASAPPAVVVNENVAAAAVFPATRSAVAIVNEGLVG
Ga0255131_107423123300027285FreshwaterTAGVADVAKKPDGYVSVILLPAASAPPAVVVKLNVAAAGVLPATRSDAAIANEVAVT
Ga0255132_111018423300027293FreshwaterPLICTPGVPVLAKKLDGYVNVMLLPTASAPPAVVVNENVAAADILPAIRSEVAIANDTPV
Ga0255124_108430013300027299FreshwaterLIVTSGVPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT
Ga0255140_108942713300027300FreshwaterSGVPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT
Ga0255220_109945723300027306FreshwaterGGPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT
Ga0255138_108599013300027333FreshwaterADVAKKPDGYVSVILLPAASAPPAVVVKLNVAAAGVLPATRSDAAIANEVAVT
Ga0255128_110089413300027336FreshwaterIVTSGVPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT
Ga0255128_110436313300027336FreshwaterLPVGGPVPLICTPGVPVLEKKPVGYVSVILLPISSLPPAVVVNENVAAAGVLPITRSDVAIANEGSVA
Ga0255210_110930913300027339FreshwaterPLICTPGVPVLEKKPTGYVSVMVLPISSLPPAVVVNENVAAAGVLPATRSDVAIANEGSV
Ga0209599_1020830423300027710Deep SubsurfacePVLEKKPVGYVNVMLLPISSLPPAVVVNENVAAAGVLPATRSPVAIANEGSVA
Ga0209190_136836923300027736Freshwater LakeLIDTPGVPDAAKKPDGYVSVMVLLVASAPPAVAVNENVAAADALPATRSDTAIANEVLVT
Ga0209597_137722813300027746Freshwater LakeTPGVPVLAKKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT
Ga0209770_1031344513300027769Freshwater LakeVPPLIVTPKVPAEVVKKPDGYVSVIVLLVASAPPAVVVNENVAAADALPATRSPVAIVNEGSVG
Ga0209086_1038753923300027770Freshwater LakeGVADVAKKPDGYVSVILLPAASAPPAVVVKLNVAAAGVLPATRSDAAIANEVAVT
Ga0209358_1055792413300027804Freshwater LakeTPGVAELEKKPDGYVSVMALPVASAPPAVVVNENVAVADVLPATRSDDAIEKDEIVD
Ga0209985_1047931123300027806Freshwater LakePVGGPPPLICTPGVPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSDVAIANKALVT
Ga0209550_1086235923300027892Freshwater LakeVGGPVPLICTPGVPVLEKKPVGYVSVILLPISSLPPAVVVNENVAAAGVLPITRSDVAIANEGSVA
Ga0209400_137136213300027963Freshwater LakePPLIDTPGVPVLAKKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT
Ga0256323_106228323300028077FreshwaterLIATPGVPVLEKKPDGYVSVMLLPLASAPPAEVVNDTVAAAGVLPATRSDAAIVNEVIVA
Ga0256323_106228813300028077FreshwaterPGVPVLEKKPAGYVSVILPPISSLPPAVVVNENVVAADVLPATRSDVAIANEGSVA
Ga0256323_106292413300028077FreshwaterPGVPVLAKKPDGYVSVMLLLVASAPPAVVVNENVAAADALPATRSDAAIANEAFVT
Ga0255259_106596413300028078FreshwaterKPDGYVSVMLLPEASAPPAVVVNDNVAAAEVLPATRSDVAIANEGLVT
Ga0255260_107135513300028081FreshwaterLIVAAGDPALAKKPDGYVSVMLLPEASAPPAVVVNDNVAAAEVLPATRSDVAIANEGLIT
Ga0255261_103487333300028097FreshwaterPDGYVNVMVLPIASAPPAVVVNENVVAADVLPATRSDVAIANEGSVA
Ga0255254_109213223300028105FreshwaterPVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAELLPATRSDVAIANEGLVT
Ga0255234_110378833300028113FreshwaterVAAGDPVPEKKSDGYVSVMVLPLESAPPAVAVNEKVAATELLPATRSDVAIANEGLVT
Ga0255234_121366113300028113FreshwaterVPPTTPPIDTAGVPELKKKLGGYVSVILLPPASAPPAVVLNANVAAAAVFPATRSAVAIVNEG
Ga0256360_105536813300028252FreshwaterGVPVLEKKPAGYVSVILLPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0255257_105429813300028257FreshwaterAVAAKKPDGYVSVMVPPVAIAPPAEVVKENVAAAAVLLATRSAGDIEKEVLVT
Ga0255257_105749013300028257FreshwaterGPPPLIVTPGVPVLTKNAEGYVSVIVPPMATHPPAVVVNENVAEAPVLPATRSDVAIANEVLVT
Ga0255233_112201013300029699FreshwaterPPLTPLIVAWGVPVLEKKPDGYVSVMALPVASAPPAVVVNENVAVADVLPATRSDDAIEKDEIVD
Ga0315907_1128438613300031758FreshwaterVPVLEKKPVGYVSVILLPVASSPPAVVVNEKVAAADVLPATRSDVAITNEGSVA
Ga0315899_1072636533300031784FreshwaterAKKADGYVSVILLPGASAPPAVVLNENVTVAFVLPATRSDAAIENKVPVT
Ga0315899_1138283023300031784FreshwaterTPLMVTAGDPALAKKPDGYVSVMVLPVASAPPAVVVNENVAAAPALPAKRSDDAIANKGLVT
Ga0315899_1166217323300031784FreshwaterGPLPLICTPGVPVLEKKPAGYVSVILPPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0315908_1151034523300031786FreshwaterVLEKKPDGYVNVMVLPVASAPPAVVVNENVAAADVLPATRSDAAITNEGPVT
Ga0315900_1079687523300031787FreshwaterPPPLIATPGVPVLEKKPDGYVSVMLLPLASAPPAEVVNDTVAAAGVLPATRSDAAISNEVFVA
Ga0315904_1127085413300031951FreshwaterPLIVTPKVPAEVEKKPDGYVSVIVLLVASAPPAVVVNENVAAAAVFPATRSAVAIVNEGLVG
Ga0315906_1128773323300032050FreshwaterVPLICTPGVPVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPAKRSDAVISKKDS
Ga0315906_1130179513300032050FreshwaterAGDPALAKKPDGYVSVMLLPEASAPPAVVVNDNVAAAEVLPATRSDVAIANEGLIT
Ga0315902_1122617423300032093FreshwaterIDTPGVPVPAKKPHGYVSVMVLPVASAPPALVVNDTVAAAGVLPATRSDAAISNEVFVT
Ga0315902_1132582013300032093FreshwaterVLEKKLDGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSAVAIANKALVT
Ga0334996_0535437_1_1593300033994FreshwaterVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPAKRSDADIANEGLVA
Ga0335019_0823857_3_1643300034066FreshwaterPALAKKPDGYVSVMVLPVASAPPAVVVNENVAVAPALPAKRSDDAIANKGLVT
Ga0335014_0477955_3_1583300034094FreshwaterMPLICTPGVPVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPAKRSD
Ga0335014_0477955_372_5273300034094FreshwaterLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPAKRSDADIANEGLVA
Ga0335014_0486354_1_1923300034094FreshwaterLTPLIVTAGAPVLEKKPDGYVNVMVLPVASAPPAVVVNENVAAADVLPATRSDAAITNEGPVT
Ga0335030_0857787_375_5243300034103FreshwaterKKPVGYVNVMLLPISSLPPAVVVNENVAAAGVLPATRSPVAIANEGSVA
Ga0335050_0467619_2_1723300034108FreshwaterLGDPALAKKPDGYVSVMLLPAASAPPAVVVKENVAAAELLPATRSDVAMLNEGLVT
Ga0335050_0469825_363_5453300034108FreshwaterLICTPGVPVLEKKPVGYVNVMLLPISSLPPAVVVNENVAAAGVLPATRSPVAIANEGSVA
Ga0335068_0546178_351_5273300034116FreshwaterMPLICTPGVPVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPAKRSDADIANEG
Ga0335056_0671403_383_5263300034120FreshwaterPDGYVSVIVLLVASAPPAVVVNENVAAAAVFPATRSAVAIVNEGLVG
Ga0335065_0774263_381_5393300034200FreshwaterMPLICTPGVPVLEKKPVGYVSVMVLPVASAPPAVVVNENVAAADVLPATRSEK
Ga0335049_0701441_422_6103300034272FreshwaterPPLIVTSGVPALEKKPDGYVSVTLLPLASAPPAVVVNENVAAADVFPATRSDAAIANDTLVT


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.