Basic Information | |
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Family ID | F082115 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 42 residues |
Representative Sequence | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Number of Associated Samples | 71 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 1.77 % |
% of genes near scaffold ends (potentially truncated) | 96.46 % |
% of genes from short scaffolds (< 2000 bps) | 71.68 % |
Associated GOLD sequencing projects | 66 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (68.142 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (43.363 % of family members) |
Environment Ontology (ENVO) | Unclassified (62.832 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (89.381 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 40.48% β-sheet: 0.00% Coil/Unstructured: 59.52% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Lake Freshwater Lentic Freshwater And Sediment Freshwater, Plankton Freshwater Lake Freshwater Freshwater Freshwater |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12421J11937_100507895 | 3300000756 | Freshwater And Sediment | IHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE* |
JGI25908J49247_100340025 | 3300003277 | Freshwater Lake | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ* |
JGI25908J49247_100398464 | 3300003277 | Freshwater Lake | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT* |
JGI25909J50240_10364131 | 3300003393 | Freshwater Lake | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ* |
JGI25907J50239_10494494 | 3300003394 | Freshwater Lake | KALEQAEAMRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT* |
JGI25912J50252_100535295 | 3300003412 | Freshwater Lake | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE* |
JGI25912J50252_100972433 | 3300003412 | Freshwater Lake | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNG* |
JGI25912J50252_101147003 | 3300003412 | Freshwater Lake | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ* |
JGI25926J51410_10326981 | 3300003490 | Freshwater Lake | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ* |
JGI25926J51410_10710971 | 3300003490 | Freshwater Lake | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT* |
Ga0007759_100523433 | 3300004836 | Freshwater Lake | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT* |
Ga0049081_100291991 | 3300005581 | Freshwater Lentic | NAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ* |
Ga0049081_101024921 | 3300005581 | Freshwater Lentic | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND* |
Ga0049081_103475491 | 3300005581 | Freshwater Lentic | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT* |
Ga0049084_101384481 | 3300005585 | Freshwater Lentic | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK* |
Ga0114339_12086801 | 3300008106 | Freshwater, Plankton | EAMRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK* |
Ga0114340_10159641 | 3300008107 | Freshwater, Plankton | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNK* |
Ga0114340_11238391 | 3300008107 | Freshwater, Plankton | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNEQH* |
Ga0114340_12177381 | 3300008107 | Freshwater, Plankton | NAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ* |
Ga0114343_100028451 | 3300008110 | Freshwater, Plankton | IHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND* |
Ga0114344_10301861 | 3300008111 | Freshwater, Plankton | KNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF* |
Ga0114344_12520101 | 3300008111 | Freshwater, Plankton | KNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNEQH* |
Ga0114346_10418491 | 3300008113 | Freshwater, Plankton | NAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND* |
Ga0114346_11471074 | 3300008113 | Freshwater, Plankton | KNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGGEQ* |
Ga0114347_100077938 | 3300008114 | Freshwater, Plankton | LKTENKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK* |
Ga0114347_10516911 | 3300008114 | Freshwater, Plankton | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE* |
Ga0114350_11469071 | 3300008116 | Freshwater, Plankton | FIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE* |
Ga0114351_100121149 | 3300008117 | Freshwater, Plankton | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK* |
Ga0114840_100009038 | 3300008258 | Freshwater, Plankton | MLXXXXXXXKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK* |
Ga0114841_100048938 | 3300008259 | Freshwater, Plankton | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK* |
Ga0114353_11248364 | 3300008264 | Freshwater, Plankton | HLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND* |
Ga0114363_11175425 | 3300008266 | Freshwater, Plankton | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGKQ* |
Ga0114364_10314171 | 3300008267 | Freshwater, Plankton | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGE* |
Ga0114878_100055338 | 3300008339 | Freshwater Lake | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK* |
Ga0114876_11178211 | 3300008448 | Freshwater Lake | FIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNEQH* |
Ga0114876_12659731 | 3300008448 | Freshwater Lake | KNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYK* |
Ga0114880_11010124 | 3300008450 | Freshwater Lake | EIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT* |
Ga0114880_12123521 | 3300008450 | Freshwater Lake | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGGKQ* |
Ga0177922_100459285 | 3300013372 | Freshwater | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNND* |
Ga0177922_101284011 | 3300013372 | Freshwater | EIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ* |
Ga0177922_103215731 | 3300013372 | Freshwater | MRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYEQTYGGGEQ* |
Ga0177922_105613641 | 3300013372 | Freshwater | AMRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGE* |
Ga0177922_109338311 | 3300013372 | Freshwater | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETHGGNK* |
Ga0177922_113033961 | 3300013372 | Freshwater | EIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ* |
Ga0181338_10323441 | 3300015050 | Freshwater Lake | KALEQAEAMRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF* |
Ga0181339_10178011 | 3300017700 | Freshwater Lake | NAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Ga0181364_10238681 | 3300017701 | Freshwater Lake | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNP |
Ga0181364_10498681 | 3300017701 | Freshwater Lake | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT |
Ga0181350_10000651 | 3300017716 | Freshwater Lake | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ |
Ga0181350_10768164 | 3300017716 | Freshwater Lake | RKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT |
Ga0181352_10408591 | 3300017747 | Freshwater Lake | RKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNKTFDQ |
Ga0181356_10681581 | 3300017761 | Freshwater Lake | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK |
Ga0181356_10718013 | 3300017761 | Freshwater Lake | KNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGE |
Ga0181357_10456067 | 3300017777 | Freshwater Lake | DEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK |
Ga0181357_10681694 | 3300017777 | Freshwater Lake | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGE |
Ga0181346_101510810 | 3300017780 | Freshwater Lake | RKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNG |
Ga0181346_10212186 | 3300017780 | Freshwater Lake | IHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ |
Ga0181346_10625106 | 3300017780 | Freshwater Lake | KNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGEGEQ |
Ga0181346_10665621 | 3300017780 | Freshwater Lake | DEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGE |
Ga0181348_10179251 | 3300017784 | Freshwater Lake | AMRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGE |
Ga0181361_1150613 | 3300019783 | Freshwater Lake | FIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ |
Ga0181359_100106321 | 3300019784 | Freshwater Lake | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF |
Ga0181359_10274697 | 3300019784 | Freshwater Lake | LNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNP |
Ga0181359_10683196 | 3300019784 | Freshwater Lake | HLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ |
Ga0181359_11597744 | 3300019784 | Freshwater Lake | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ |
Ga0181354_10406924 | 3300022190 | Freshwater Lake | IHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGE |
Ga0181354_10471311 | 3300022190 | Freshwater Lake | HLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGSEQ |
Ga0181351_11064771 | 3300022407 | Freshwater Lake | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT |
Ga0255114_10299016 | 3300027145 | Freshwater | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK |
Ga0255113_10342273 | 3300027147 | Freshwater | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND |
Ga0255131_10163271 | 3300027285 | Freshwater | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND |
Ga0255131_10295511 | 3300027285 | Freshwater | DEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF |
Ga0255126_10328621 | 3300027295 | Freshwater | KNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK |
Ga0255124_10042771 | 3300027299 | Freshwater | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Ga0255127_10488723 | 3300027301 | Freshwater | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Ga0255137_10484921 | 3300027375 | Freshwater | DEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYE |
Ga0255125_10147584 | 3300027534 | Freshwater | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND |
Ga0255125_10586511 | 3300027534 | Freshwater | EKQQIINAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF |
Ga0209552_10217986 | 3300027563 | Freshwater Lake | NAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ |
Ga0209651_10244377 | 3300027581 | Freshwater Lake | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ |
Ga0209651_10583824 | 3300027581 | Freshwater Lake | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT |
Ga0255123_10629103 | 3300027589 | Freshwater | EKEKQQIINAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF |
Ga0255120_10216801 | 3300027594 | Freshwater | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK |
Ga0208974_10427821 | 3300027608 | Freshwater Lentic | HLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNND |
Ga0208974_10734785 | 3300027608 | Freshwater Lentic | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYK |
Ga0208974_11859872 | 3300027608 | Freshwater Lentic | NAQMDMFIHLNNLPYGLEYIEKRQSAEDFSQQYYNETFGGNND |
Ga0209356_10738794 | 3300027644 | Freshwater Lake | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT |
Ga0209357_10777684 | 3300027656 | Freshwater Lake | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ |
Ga0208975_100230818 | 3300027659 | Freshwater Lentic | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND |
Ga0208975_10057191 | 3300027659 | Freshwater Lentic | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNEQH |
Ga0208975_10206336 | 3300027659 | Freshwater Lentic | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND |
Ga0209769_10235561 | 3300027679 | Freshwater Lake | FIHLNNLPYGLEYLEKRQSAEDFSQQYYNQTFGDESNT |
Ga0209769_11588951 | 3300027679 | Freshwater Lake | QMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Ga0209768_102860843 | 3300027772 | Freshwater Lake | MDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ |
Ga0209246_100259421 | 3300027785 | Freshwater Lake | HLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNG |
Ga0209353_100006751 | 3300027798 | Freshwater Lake | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGGEQ |
Ga0209354_100015751 | 3300027808 | Freshwater Lake | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGGEQ |
Ga0209990_100511171 | 3300027816 | Freshwater Lake | QAETMRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK |
Ga0209990_101469003 | 3300027816 | Freshwater Lake | DEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNND |
Ga0209990_104887591 | 3300027816 | Freshwater Lake | MFIQVNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Ga0209550_1002665211 | 3300027892 | Freshwater Lake | DMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGEGEQ |
Ga0315907_100634651 | 3300031758 | Freshwater | KDEIKNAQMDMFIHVNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNK |
Ga0315899_100278351 | 3300031784 | Freshwater | EIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF |
Ga0315900_100483831 | 3300031787 | Freshwater | NAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETF |
Ga0315900_104251981 | 3300031787 | Freshwater | MFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNEQH |
Ga0315909_106871451 | 3300031857 | Freshwater | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNEQH |
Ga0315901_112426801 | 3300031963 | Freshwater | KDEIKNAQMDMFIHVNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Ga0315906_112079751 | 3300032050 | Freshwater | IKNAQMDMFIHVNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNE |
Ga0315905_101314251 | 3300032092 | Freshwater | KDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETFGGGKQ |
Ga0315905_113162501 | 3300032092 | Freshwater | AMRKDEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ |
Ga0315902_102452051 | 3300032093 | Freshwater | LNNLPYGLEYLEKRQSAEDFSQQYYNETFGGNNEQH |
Ga0315902_102588546 | 3300032093 | Freshwater | AQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGNNGQ |
Ga0315903_100964437 | 3300032116 | Freshwater | DEIKNAQMDMFIHLNNLPYGLEYLEKRQSAEDFSQQYYNETYGGGEQ |
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