Metagenome / Metatranscriptome Family F082104

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082104
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	61 residues
Representative Sequence	MELRLTDKEEELLLELLQEQHKHLLHEIAKADHHEFRTALRHRCTALEGIMEKLKAPVHSAA
Number of Associated Samples	67
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.19 %
% of genes near scaffold ends (potentially truncated)	18.58 %
% of genes from short scaffolds (< 2000 bps)	64.60 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.372 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (36.283 % of family members)
Environment Ontology (ENVO)	Unclassified (38.938 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.363 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.11% β-sheet: 0.00% Coil/Unstructured: 48.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.4: YciF-like	d2gyqa1	2gyq	0.91296
a.23.1.1: HSC20 (HSCB), C-terminal oligomerisation domain	d1fpoa2	1fpo	0.90384
a.25.1.1: Ferritin	d1vjxa1	1vjx	0.90369
a.29.6.0: automated matches	d1xg2b1	1xg2	0.89802
a.25.1.0: automated matches	d5hjfa_	5hjf	0.89749

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13602	ADH_zinc_N_2	11.50
PF00905	Transpeptidase	10.62
PF08240	ADH_N	9.73
PF13419	HAD_2	7.08
PF00107	ADH_zinc_N	6.19
PF05239	PRC	4.42
PF08486	SpoIID	4.42
PF00903	Glyoxalase	1.77
PF00118	Cpn60_TCP1	1.77
PF03448	MgtE_N	1.77
PF08448	PAS_4	0.88
PF10569	Obsolete Pfam Family	0.88
PF03030	H_PPase	0.88
PF02786	CPSase_L_D2	0.88
PF00753	Lactamase_B	0.88
PF12850	Metallophos_2	0.88
PF13480	Acetyltransf_6	0.88
PF04366	Ysc84	0.88
PF00346	Complex1_49kDa	0.88
PF08245	Mur_ligase_M	0.88
PF02368	Big_2	0.88
PF02954	HTH_8	0.88
PF00266	Aminotran_5	0.88
PF13177	DNA_pol3_delta2	0.88
PF13174	TPR_6	0.88
PF13507	GATase_5	0.88
PF01168	Ala_racemase_N	0.88
PF01943	Polysacc_synt	0.88
PF01144	CoA_trans	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2385	Peptidoglycan hydrolase (amidase) enhancer domain SpoIID	Cell wall/membrane/envelope biogenesis [M]	4.42
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.77
COG2239	Mg/Co/Ni transporter MgtE (contains CBS domain)	Inorganic ion transport and metabolism [P]	1.77
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.88
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.88
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.88
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.88
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.88
COG3808	Na+ or H+-translocating membrane pyrophosphatase	Energy production and conversion [C]	0.88
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.32 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.54 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	18.58 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.42 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.65 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.88 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	15.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.77 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.88 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.77 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.88 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.88 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	0.88 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.88 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.88 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.77 %
Lacipirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae	0.88 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.88 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.88 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.77 %
Bythopirellula	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Bythopirellula	0.88 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	0.88 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.88 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.88 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.42 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.77 %
Bythopirellula goksoeyrii	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Bythopirellula → Bythopirellula goksoeyrii	0.88 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.88 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.88 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.88 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_101735002	Not Available	528	Open in IMG/M
3300003218\|JGI26339J46600_10007490	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3190	Open in IMG/M
3300003218\|JGI26339J46600_10124816	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300003219\|JGI26341J46601_10092199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300004080\|Ga0062385_10256460	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300004080\|Ga0062385_10353202	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300004092\|Ga0062389_102271388	Not Available	715	Open in IMG/M
3300004152\|Ga0062386_100055200	All Organisms → cellular organisms → Bacteria	2996	Open in IMG/M
3300004152\|Ga0062386_100149199	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300004152\|Ga0062386_101592774	Not Available	545	Open in IMG/M
3300004635\|Ga0062388_100765944	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300005439\|Ga0070711_100080363	All Organisms → cellular organisms → Bacteria	2321	Open in IMG/M
3300005524\|Ga0070737_10007378	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9739	Open in IMG/M
3300008784\|Ga0103637_1000513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1211	Open in IMG/M
3300008786\|Ga0103639_1001662	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300009630\|Ga0116114_1191274	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300009644\|Ga0116121_1035573	Not Available	1575	Open in IMG/M
3300009698\|Ga0116216_10436638	Not Available	793	Open in IMG/M
3300010048\|Ga0126373_10238743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1782	Open in IMG/M
3300010339\|Ga0074046_10092781	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1953	Open in IMG/M
3300010339\|Ga0074046_10891586	Not Available	517	Open in IMG/M
3300010339\|Ga0074046_10927907	Not Available	504	Open in IMG/M
3300010341\|Ga0074045_10003385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14373	Open in IMG/M
3300010341\|Ga0074045_10042990	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3313	Open in IMG/M
3300010341\|Ga0074045_10073008	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300010341\|Ga0074045_10233273	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300010341\|Ga0074045_10430999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	852	Open in IMG/M
3300010341\|Ga0074045_10478482	Not Available	802	Open in IMG/M
3300010376\|Ga0126381_100660438	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300010376\|Ga0126381_103710055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300010379\|Ga0136449_100000508	All Organisms → cellular organisms → Bacteria	109454	Open in IMG/M
3300010379\|Ga0136449_100008258	All Organisms → cellular organisms → Bacteria	29504	Open in IMG/M
3300011418\|Ga0153954_1168294	Not Available	544	Open in IMG/M
3300014155\|Ga0181524_10050311	All Organisms → cellular organisms → Bacteria	2648	Open in IMG/M
3300014156\|Ga0181518_10060025	All Organisms → cellular organisms → Bacteria	2238	Open in IMG/M
3300014156\|Ga0181518_10070954	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300014156\|Ga0181518_10130829	All Organisms → cellular organisms → Bacteria → Acidobacteria	1366	Open in IMG/M
3300014164\|Ga0181532_10000009	All Organisms → cellular organisms → Bacteria	263954	Open in IMG/M
3300014164\|Ga0181532_10054799	All Organisms → cellular organisms → Bacteria	2618	Open in IMG/M
3300014492\|Ga0182013_10636159	Not Available	540	Open in IMG/M
3300016702\|Ga0181511_1015813	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7151	Open in IMG/M
3300016702\|Ga0181511_1249685	All Organisms → cellular organisms → Bacteria	3392	Open in IMG/M
3300016730\|Ga0181515_1005176	Not Available	784	Open in IMG/M
3300016730\|Ga0181515_1374880	Not Available	537	Open in IMG/M
3300016750\|Ga0181505_10378205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300017941\|Ga0187850_10209505	Not Available	889	Open in IMG/M
3300017955\|Ga0187817_10614928	Not Available	693	Open in IMG/M
3300017961\|Ga0187778_10112213	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Bythopirellula → Bythopirellula goksoeyrii	1700	Open in IMG/M
3300017966\|Ga0187776_10893306	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	645	Open in IMG/M
3300017973\|Ga0187780_10674651	Not Available	744	Open in IMG/M
3300017975\|Ga0187782_10800951	Not Available	729	Open in IMG/M
3300018060\|Ga0187765_10737025	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300018086\|Ga0187769_10011508	All Organisms → cellular organisms → Bacteria → Acidobacteria	5672	Open in IMG/M
3300018088\|Ga0187771_11804686	Not Available	519	Open in IMG/M
3300019284\|Ga0187797_1394580	Not Available	613	Open in IMG/M
3300019787\|Ga0182031_1272894	Not Available	817	Open in IMG/M
3300021405\|Ga0210387_11800720	Not Available	516	Open in IMG/M
3300021477\|Ga0210398_10031803	All Organisms → cellular organisms → Bacteria	4412	Open in IMG/M
3300021560\|Ga0126371_13654844	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300026035\|Ga0207703_10468043	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300027698\|Ga0209446_1011790	All Organisms → cellular organisms → Bacteria → Acidobacteria	2143	Open in IMG/M
3300027824\|Ga0209040_10220019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	971	Open in IMG/M
3300027825\|Ga0209039_10175091	Not Available	883	Open in IMG/M
3300027854\|Ga0209517_10188249	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300027902\|Ga0209048_10036971	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4085	Open in IMG/M
3300027968\|Ga0209061_1006287	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9745	Open in IMG/M
3300028558\|Ga0265326_10223772	Not Available	542	Open in IMG/M
3300031250\|Ga0265331_10082863	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
3300031708\|Ga0310686_112442274	All Organisms → cellular organisms → Bacteria → Acidobacteria	1278	Open in IMG/M
3300031708\|Ga0310686_119696545	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300031912\|Ga0306921_10815088	Not Available	1065	Open in IMG/M
3300032770\|Ga0335085_10000074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	342602	Open in IMG/M
3300032770\|Ga0335085_10007462	All Organisms → cellular organisms → Bacteria	16941	Open in IMG/M
3300032770\|Ga0335085_10154084	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2878	Open in IMG/M
3300032770\|Ga0335085_10157821	All Organisms → cellular organisms → Bacteria → Acidobacteria	2835	Open in IMG/M
3300032770\|Ga0335085_11488587	Not Available	706	Open in IMG/M
3300032782\|Ga0335082_10008261	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	11297	Open in IMG/M
3300032782\|Ga0335082_10194452	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1931	Open in IMG/M
3300032783\|Ga0335079_10002659	All Organisms → cellular organisms → Bacteria	20570	Open in IMG/M
3300032783\|Ga0335079_10090149	All Organisms → cellular organisms → Bacteria	3481	Open in IMG/M
3300032783\|Ga0335079_10199791	All Organisms → cellular organisms → Bacteria	2219	Open in IMG/M
3300032783\|Ga0335079_11089743	Not Available	809	Open in IMG/M
3300032783\|Ga0335079_11348574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	710	Open in IMG/M
3300032783\|Ga0335079_12335083	Not Available	507	Open in IMG/M
3300032805\|Ga0335078_10618518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1362	Open in IMG/M
3300032805\|Ga0335078_11171422	Not Available	891	Open in IMG/M
3300032805\|Ga0335078_12098020	Not Available	601	Open in IMG/M
3300032828\|Ga0335080_11105648	Not Available	801	Open in IMG/M
3300032828\|Ga0335080_12100060	Not Available	545	Open in IMG/M
3300032892\|Ga0335081_10007609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17332	Open in IMG/M
3300032892\|Ga0335081_10015401	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	12365	Open in IMG/M
3300032892\|Ga0335081_10032482	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8382	Open in IMG/M
3300032892\|Ga0335081_10046190	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6868	Open in IMG/M
3300032892\|Ga0335081_10078901	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4991	Open in IMG/M
3300032892\|Ga0335081_10413523	Not Available	1730	Open in IMG/M
3300032892\|Ga0335081_10733724	Not Available	1192	Open in IMG/M
3300032892\|Ga0335081_11967682	Not Available	625	Open in IMG/M
3300032893\|Ga0335069_10016021	All Organisms → cellular organisms → Bacteria	10472	Open in IMG/M
3300032893\|Ga0335069_12379150	Not Available	551	Open in IMG/M
3300032895\|Ga0335074_10007849	All Organisms → cellular organisms → Bacteria	14815	Open in IMG/M
3300032895\|Ga0335074_10014089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11225	Open in IMG/M
3300032898\|Ga0335072_10337479	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300032954\|Ga0335083_10424480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1130	Open in IMG/M
3300032955\|Ga0335076_10647564	Not Available	938	Open in IMG/M
3300033004\|Ga0335084_10322466	Not Available	1595	Open in IMG/M
3300033134\|Ga0335073_10011192	All Organisms → cellular organisms → Bacteria	12602	Open in IMG/M
3300033134\|Ga0335073_10032610	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7141	Open in IMG/M
3300033134\|Ga0335073_10654333	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300033134\|Ga0335073_11141663	Not Available	789	Open in IMG/M
3300033158\|Ga0335077_10320063	All Organisms → cellular organisms → Bacteria → Acidobacteria	1691	Open in IMG/M
3300033158\|Ga0335077_11156608	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300033158\|Ga0335077_12016087	Not Available	536	Open in IMG/M
3300033402\|Ga0326728_10000109	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	329138	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.46%
Host-Associated	Host-Associated	3.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.91%
Aquatic	Environmental → Aquatic	26.55%
Plants	Host-Associated → Plants	2.65%
Fungi	Host-Associated → Fungi	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.03%
Freshwater	Environmental → Aquatic → Freshwater	25.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%
Marine	Environmental → Aquatic → Marine	0.89%
Peat	Environmental → Terrestrial → Peat	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Mycelium	Host-Associated → Fungi → Mycelium	0.89%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	54.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	53.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	36.28%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.50%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	7.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.19%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.54%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.77%
Wetland Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil	1.77%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300008784	Microbial communities from wetland soil in Czech Republic - M1_cDNA	Environmental	Open in IMG/M
3300008786	Microbial communities from wetland soil in Czech Republic - M3_cDNA	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011418	Attine ant fungus gardens microbial communities from Florida, USA - TSFL038 MetaG	Host-Associated	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028558	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG	Host-Associated	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1017350022	3300001213	Wetland	MELRLTDKEQELLLELLNDHYKHLLHEINKAHYRDFKAALRVRCTAVEEIIERLKVPIPSAV*
JGI26339J46600_100074903	3300003218	Bog Forest Soil	MELRLTDKEEELLLELLQDHQKHLLHEINKAHHHEFKAGLRNRCIMVEEIIEKLQAVCSV
JGI26339J46600_101248161	3300003218	Bog Forest Soil	LTIMLSPKNMEVAMELRLTDKEEELLLELLQDHQKHLLHEINKADHHEFKVGLRNRCTMVEGIIERLQTVRSV*
JGI26341J46601_100921992	3300003219	Bog Forest Soil	MELRLTDKEEELLRELLQDYHKRLLHEINKTHHHEFKAGLRNRCIMVEEIIEKLQTVCSV
Ga0062385_102564602	3300004080	Bog Forest Soil	MELRLTDKEEELLLELLQDHQKHLLHEINKADHHEFKAGLRKRCTMVEGIIEKLQTVHSV
Ga0062385_103532022	3300004080	Bog Forest Soil	MELRLTSREEDLLRELLEEHQKHLLHEINKADHHEFKTNLRNRCTLVEGMIEKLQAVHST
Ga0062389_1022713882	3300004092	Bog Forest Soil	MELRLTSREEDLLRELLEEHQKHLLHEINKADHHEFKTNLRNRCTLVEGMIEKLQAVHSI
Ga0062386_1000552003	3300004152	Bog Forest Soil	MEMRLTEKEHKLLLEVLQEQHKHLLREIAKADHHEFKVALRHRCDMLEEIMHKMHEPVHAMA*
Ga0062386_1001491993	3300004152	Bog Forest Soil	AMELRLTDQEEELLRELLQEDHKHLLRDIAKADHHEFRAGLRNRCTLLESIMHKLQPVHSTL*
Ga0062386_1015927742	3300004152	Bog Forest Soil	MELRLTDKEEELLRELLQDYHKRLLHEINKTHHHEFKAGLRNRCIMVEEI
Ga0062388_1007659442	3300004635	Bog Forest Soil	MELRLTDKEEELLQELLQDHQKHLLHEINKADHHEFKTGLRNRYTMVEEIIKKLQTVHSV
Ga0070711_1000803632	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MELRLTDKEHELLLELLTEQQKHLLHEINKAHYHDAKTTLRQRCTMVEDILQRLNERVITPA*
Ga0070737_100073782	3300005524	Surface Soil	MELRLTYEEHELLLQLLQEHQKHLLLEIAKADHHDFKTALRHRCAAVEGIIGKLREPVASAA*
Ga0103637_10005131	3300008784	Wetland Soil	GTCLEVAMELRLTDQEEELLREILQDHHKHLLHEINKADHYEFKVGLRHRCTVVEGLIDKLQAVHSS*
Ga0103639_10016622	3300008786	Wetland Soil	MELRLTDQEEELLREILQDHHKHLLHEINKADHYEFKVGLRHRCTVVEGLIDKLQAVHSS
Ga0116114_11912742	3300009630	Peatland	MELRLTDKEEELLLELLQEQHKHLLHEIAKADHHEFRTALRHRCTALEGIMEKLKAPVHSAA*
Ga0116121_10355732	3300009644	Peatland	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCTALEGIMEKLKAPVHSVA*
Ga0116216_104366381	3300009698	Peatlands Soil	MELRLTEKEEELLQELLQDHQKHLLHEINKADHHEFKTGLRNRYTMVEGIIKKLQTVHSD
Ga0126373_102387433	3300010048	Tropical Forest Soil	MELRLTESEHQVLLQLLQEQQKHLLHEIAKADHHEFKVALRDRCNTLERILDKLTQPVHSAA*
Ga0074046_100927812	3300010339	Bog Forest Soil	MEVAMELRLTDKEEELLLELLQDHQKHLLHEINKADHHEFKVGLRNRCTMVEGIIERLQTVRSV*
Ga0074046_108915862	3300010339	Bog Forest Soil	MELRLTDQEEELLRELLQEDHKHLLRDIAKADHHEFRAGLRNRCTLLESIMHKLQPVHSTL*
Ga0074046_109279071	3300010339	Bog Forest Soil	MEVAMELRLTDKEEELLLELLQDHQKHLLHEINKAHYHEFKAGLRNRCIMLEQIIEKLQTVCSV*
Ga0074045_100033859	3300010341	Bog Forest Soil	MELRLTEKEEELLQELLQDHQKHLLHEINKADHHEFKTGLRNRYTMVEEIIKKLQTVHSV
Ga0074045_100429903	3300010341	Bog Forest Soil	MELRLTDKEEELLLELLQENQKRLLHEINKAHHHEFKAGLRNRCIMVEEIIEKLQTVCSV
Ga0074045_100730083	3300010341	Bog Forest Soil	MELRLTDQEELLRELLQDHHTHLLRDIAKADHHEFRAGLRNRCTLLESIMHKLQPVHSTL
Ga0074045_102332731	3300010341	Bog Forest Soil	MEVRLTDKEEELLQELLQDHQKHLLHEINKADHHEFKTGLRSRYTMVEEIIKKLQMVHSV
Ga0074045_104309992	3300010341	Bog Forest Soil	MELRLTDKEEELLLEVLQEHQRHLLHEINKADHHEFKTGLRKRCTMVEGLVEKLQAVHSV
Ga0074045_104784822	3300010341	Bog Forest Soil	AMELRLTDQEEEFLRELLQEHHKHLLHEIAKADHHEFRAGLRHRCTTLEGMMHKLQVVHSTA*
Ga0126381_1006604382	3300010376	Tropical Forest Soil	MELRLTNKEQELLLELLTEHQKHLLHEINKAHYLEAKTVLRLRCTLVEDILQRLNEHVIAPA*
Ga0126381_1037100551	3300010376	Tropical Forest Soil	MSLGTRKHLEVAMELRLTGKEEDLLRELLQEHHKHLLHEINKASHREFKTDLRNRCTLVEGMMEKLQAVRAA*
Ga0136449_10000050877	3300010379	Peatlands Soil	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCNALEGIMEKLKAPVHSAA*
Ga0136449_10000825812	3300010379	Peatlands Soil	MELRLTEKEEELLQELLQDHQKHLLHEINKADHHEFKTGLRNRYTMVEGIIKKLQTVHSV
Ga0153954_11682942	3300011418	Attine Ant Fungus Gardens	MELRLTDKEQDLLFELLGEQQKHLLHQINKAHLHECKIALRDRCTLVEELLQRLKQPVVSVA*
Ga0181524_100503113	3300014155	Bog	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCTALEGIMEKLKAPVHSAA*
Ga0181518_100600253	3300014156	Bog	MEVTMELRLTSKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCNALEGIMEKLKAPVHSAA*
Ga0181518_100709543	3300014156	Bog	MEVTMELRLTSKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCNALEGIMEKLKAPAHSAA*
Ga0181518_101308292	3300014156	Bog	MELRLTDKEEELLLELLQDHQKHLLHEINKADHHAFKTGLRNRYTMVEGLVDKLQTVHSV
Ga0181532_10000009128	3300014164	Bog	MELRLTDKEHGLLLELLQEQHKHLLRDIAKADHHEFRSALRDRCTALEGVMEKLRVPVHSAA*
Ga0181532_100547992	3300014164	Bog	MELRLTDKEQELLVALLQEQQKHLLHQIAKADHYEFKAVLRDQCNVLEGIMDKLKVPVPSAA*
Ga0182013_106361591	3300014492	Bog	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCTVLEGIMEKLKAPVHSAA*
Ga0181511_10158133	3300016702	Peatland	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCTALEGIMEKLKAPVHSAA
Ga0181511_12496852	3300016702	Peatland	MELRLTDKEHGLLLELLQEQHKHLLRDIAKADHHEFTSALRDRCTALEGVMEKLRVPVHSAA
Ga0181515_10051762	3300016730	Peatland	MELRLTSKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCNALEGIMEKLKAPAHSAA
Ga0181515_13748801	3300016730	Peatland	MELRLTDKEHGLLLELLQEQHKHLLRDIAKADHHEFRSALRDRCTALEGVMEKLRVPVHSAA
Ga0181505_103782052	3300016750	Peatland	LEVAMELRLTDKEEELLLELLQDHQKHLLHEINKADHHAFKTGLRNRYTMVEGLVDKLQTVHSV
Ga0187850_102095052	3300017941	Peatland	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCTALEGIMEKLKAPVHSVA
Ga0187817_106149282	3300017955	Freshwater Sediment	MELRLTDEEHDLLMDVLQEHQKHLLREIAKAHHHDYKVALRHRCNVLEGMMLKVKEPAPVLA
Ga0187778_101122132	3300017961	Tropical Peatland	MELQLTETEHRLLHEILQEQHKHLLREIAKADHHEFKKSLRHRCDTLEEIMHKMHEPVHAMV
Ga0187776_108933062	3300017966	Tropical Peatland	MELRLTDNEQELLLELLREQHKHLLHEINKAHHRDFKMALRQRCTVLEEIIQKVNEPVLTAA
Ga0187780_106746512	3300017973	Tropical Peatland	LQLTETEHRLLHEILQEQHKHLLREIAKADHHEFKKSLRHRCDTLEEIMHKMHEPVHAMV
Ga0187782_108009511	3300017975	Tropical Peatland	MELRLTDKESELLLQLLQERQKHFLHEIAKADHHEFKIALRQRCAALEGIMQKLNEPVHSAA
Ga0187765_107370251	3300018060	Tropical Peatland	MELRLTDKEEELLRELLQEHHKHLLHEINKASHREFKVDLRSRCAIVEGMIEKLQVMRAA
Ga0187769_100115082	3300018086	Tropical Peatland	MELRLTEKEQDLLRELLLDHQKHLLHEINKAAHHEFKTGLRNRYTMVDEILNKLQTKHWVGSE
Ga0187771_118046862	3300018088	Tropical Peatland	MELRLTDKEEELLLELLQEHQKHLLHEINKAHHHEFKTGLRNRCTMVEG
Ga0187797_13945802	3300019284	Peatland	ARAEVGMELQLTETEHRLLHEILQEQHKHLLREIAKADHHEFKKSLRHRCDTLEEIMHKMHEPVHAMV
Ga0182031_12728942	3300019787	Bog	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCTVLEGIMENLKAPVHSAA
Ga0210387_118007201	3300021405	Soil	MELRLTDKEQELLVEILQEQHKHLLHQIAKTDHYEFKTMLRNRCGVLEGLVEKIKAPVHTAA
Ga0210398_100318033	3300021477	Soil	MQLRLTDKEQELLTTFLQEPQKHLLHQIAKADHYEFRARLRDQYNVLEGIIGKLKVLVSSAA
Ga0126371_136548441	3300021560	Tropical Forest Soil	MELRLTENEHQVLLQLLQEQHKHLLHEIAKADHHEFKVALRDRCNTLERILDMLTRPVHSAA
Ga0207703_104680432	3300026035	Switchgrass Rhizosphere	MELRLTDKEHEPLLELLTEQQKHPLHEINKAHYHDAKTTLRQRCTMVEDILQRLNERVITPA
Ga0209446_10117901	3300027698	Bog Forest Soil	MEVRLTDKEEELLQELLQDHQKHLLHEINKADHHEFKTGLRSRYTMVEEIIKKLQ
Ga0209040_102200192	3300027824	Bog Forest Soil	KMEVAMELRLTDKEEELLLELLQDHQKHLLHEINKAHHHEFKAGLRNRCIMVEEIIEKLQAVCSV
Ga0209039_101750912	3300027825	Bog Forest Soil	MEVAMELRLTDKEEELLLELLQDHQKHLLHEINKAHHHEFKAGLRNRCIMVEEIIEKLQAVCSV
Ga0209517_101882491	3300027854	Peatlands Soil	MELRLTDKEEELLLEFLQEQHKHLLHEIAKADHHEFRTALRHRCNALEGIMEKLKAPVHSAA
Ga0209048_100369715	3300027902	Freshwater Lake Sediment	MELRLTDKEEELLMEVLHEQQKHLLHEIAKADHHEFKTTLRHRCTLLEGIIEKVQAVKAS
Ga0209061_100628713	3300027968	Surface Soil	MELRLTYEEHELLLQLLQEHQKHLLLEIAKADHHDFKTALRHRCAAVEGIIGKLREPVASAA
Ga0265326_102237721	3300028558	Rhizosphere	MELRLTDKEEELLAEVLREQQKHLLHEIAKADHHAFKTTLRNRCTLLEGIIEKVQAVHAG
Ga0265331_100828632	3300031250	Rhizosphere	MELRLTDKEEELLTEVLREQQKHLLHEIAKADHHAFKTTLRNRCTLLEGIIEKVQAVHAG
Ga0310686_1124422742	3300031708	Soil	MELRLTDKERELLLELLNEQQKHLLHQINKASHYDFKVALRERCTLLEGIQQRLKEAIAPAA
Ga0310686_1196965451	3300031708	Soil	MELRLTDKEQELLLELLQEQYKHFLLGIAKADHFAYKVELRARCTVLEGIVEKLKMPVHTAA
Ga0306921_108150882	3300031912	Soil	MELRLTDKEEELLREILQDHHKHLLHEINRADHHEFKTGLRNRCTVVEGLIDKLQTVRAV
Ga0335085_10000074235	3300032770	Soil	MELRLTDKEHELLLEVFQEYHKHLLHEIAKADYHDFRAALRCRCDTLEGILQKVNEPIHSVV
Ga0335085_1000746211	3300032770	Soil	MELRLTDEEEELLLELLQEQHKHLLHEINKAHHHDFKASLRNRCTMVEGMIENLRAVHSA
Ga0335085_101540842	3300032770	Soil	MEMRLTSEEEELLLELLQEQHKHLLHEINKAHHHDFKITLRSRCVTVEGIIEKLQAVHSV
Ga0335085_101578211	3300032770	Soil	MELRLTDEEKDLLLDLLQEDHKHLLHEIAKAHHHDFKVALRHRCSVLEGMMLKVKEPAPVLA
Ga0335085_114885871	3300032770	Soil	MELRLTDKEHELLVELLHEQHKHLLHEIAKADHHAFKSALRDRCALLEGIANKLNAPVH
Ga0335082_100082616	3300032782	Soil	MELRLTDKEEGLLRELLQEHHKHLLHEINKASHREFKVELRSRCAIVEGMIEKLQVARAA
Ga0335082_101944522	3300032782	Soil	MEMRLTSEEEELLLELLQEQHKHLLHEINKAHHHDFKIALRSRCVTVEGIIEKLQAVHSV
Ga0335079_1000265914	3300032783	Soil	MEMRLTEKEHTLLLEVLQEHHKHLLHEIAKADHHEFKMALHHRCDTLEEIMRKMHEPVHAMA
Ga0335079_100901493	3300032783	Soil	MELRLTEREHGLLLELLQERHKHLLHDIAKADHHAFREALRERCTTLEGVLEKLRVPVHSAA
Ga0335079_101997912	3300032783	Soil	MELRLTDSEHELLLQLLQEQHKHLLHEIAKADHHEFRTALRHRCTALEGIMEKLKAPVHSAA
Ga0335079_110897431	3300032783	Soil	MNLRLTDKEHDLLLEVFQEYHKHLLHEIAKADYYEFKAALRRRCDTLEGILQKLEEPVHLAAE
Ga0335079_113485742	3300032783	Soil	MELRLTDKEEELLRELLQEHHKHMLHEINKASHREFKTDLRNRCVMVEGMMERLQAAHAA
Ga0335079_123350831	3300032783	Soil	MELRLTDNEQELLLELLREQHKHLLHEINKAHHRDFKMALRQRCTVLEEIMQKVNEPVLTAA
Ga0335078_106185182	3300032805	Soil	MELRLTDKEEELLLQLLQEQHKHLLHEIAKADHHEFKTALRHRCTALEGIMEK
Ga0335078_111714222	3300032805	Soil	MELRLTDKEQDLLLELLQEWHKHLLHDIAKADHREFRMALRDRCDTLEGVLEKLRAPVHSAA
Ga0335078_120980201	3300032805	Soil	MELRLTEKEEALLLELLRDHHTHLLREIAKADHHDFKSNLRHRCDLLEGIMSKLQVAVH
Ga0335080_111056481	3300032828	Soil	MMLRLTENEEELLRELLQEHHKHLLHEINKASHREFKADLRNRCAAVEAMMEKLQAVHAA
Ga0335080_121000601	3300032828	Soil	METLVVAMELRLSDEEQELLLELLREQHKHLLHEINKAHHHDFKVGLRTRCTMVEGIIEKLQAVHS
Ga0335081_1000760912	3300032892	Soil	MELRLTEKEHELLLQLLQEQHKHLLHEIAKADHHQFRTELRGRCTVLEGMMAKLKEPVAA
Ga0335081_100154016	3300032892	Soil	MELRLTDKEEELLLQLLQEQHKHLLHEIAKADHHEFKTALRHRCTALEGIMEKLKAPVHSAA
Ga0335081_100324825	3300032892	Soil	MELRLTDKEHDLLIEILHEQHKHLLHEIAKTSHREFKTTLRDRCEVLEGLMRKAGEPVHVAA
Ga0335081_100461905	3300032892	Soil	MELRLTDEEHDLLLQFLEERHKHLLHDIAKADHHEFRQGLRDRCTTLERMLEKLRVPVHTAA
Ga0335081_100789014	3300032892	Soil	MELRLTDKEHELLLELLQEQHKHLLHEINKAHHHEFKVALRHRCELLEGMMQKVNEPVPAAA
Ga0335081_104135232	3300032892	Soil	MELRLTDKEHELLTELLQEQHKHLLHEIAKASHHDFKIALRHRCETLEAILSKVAESVHSAA
Ga0335081_107337243	3300032892	Soil	MELRLTEKEEALLLQCLQEQHKHLLHEIAKADHHEFKHALRDRCQMLESIMEKLHAMQTTAA
Ga0335081_119676821	3300032892	Soil	TMELRLTDNEQELLLELLREQHKHLLHEINKAHHRDFKMALRQRCTVLEEIMQKVNEPVLTAA
Ga0335069_100160218	3300032893	Soil	MELRLTDEERDLLLDLLQEDHKHLLHEIAKAHHHDFKVALRHRCSVLEGMMLKVKEPAPVLA
Ga0335069_123791502	3300032893	Soil	LTDREHDLLVELLQDHHKHLLREIAKADHHEFRTSLRRRCEVLERIMHELSEAYSTA
Ga0335074_100078496	3300032895	Soil	MELRLTDKEQELLLEILQEQHKHLLHEIAKTHHHDFKTILRDRCTVLEGILQKVNQPVPLTA
Ga0335074_100140894	3300032895	Soil	MELRLTDKEHDLLLELLQERHKHLLHDIAKADHHEFKTALRERCTTLEGVLEKLLTRVPSAA
Ga0335072_103374792	3300032898	Soil	MELRLTDKEQDLLRELLQEWHKHLLHDIAKADHREFRMALRDRCDTLEGVLEKLRAPVHSAA
Ga0335083_104244801	3300032954	Soil	MELRLTDKEHELLVELLHEQHKHLLHEIAKADHHAFKSALRDRCALLEGIAN
Ga0335076_106475641	3300032955	Soil	LLVTLWSAEVTMEMRLTEKEHTLLLEVLQEHHKHLLHEIAKADHHEFKMALHHRCDTLEEIMRKMHEPVHAMA
Ga0335084_103224662	3300033004	Soil	MELRLTDQEHDLLLELLQEQHKHLLHDIAKADHHQFRQALRDRCTALEGVLEKLRAPVHSAA
Ga0335073_100111923	3300033134	Soil	MELRLTEKEHELLLEILQEQHKHLLREIAKADHHEFRTALRQRCDALEGIMRKVREPVHSAA
Ga0335073_100326107	3300033134	Soil	MELQLTETEHRLLHELLQEQHKHLLREIAKADHHEFKKALHHRCDTLEEIMQKMHEPVHSAA
Ga0335073_106543332	3300033134	Soil	MELPLTDKEHELLLEVFQEYHRHLLHEIAKADHHEFKAALRRRCDTLEGILQKAEQQVHSAA
Ga0335073_111416632	3300033134	Soil	MELRLTDKEQELLLELLSEQQKHLLHQINKAHHHDFKVALRERCTLLEGMLRRLQEPVASVA
Ga0335077_103200631	3300033158	Soil	MELRLTEQEKQLLTELLQEQHKHLLHEIARAHHHDFKVTLRDRCTVLEGMMEKMGAPIHSAA
Ga0335077_111566082	3300033158	Soil	AMELRLTDKEAKLLLEVFQEYQRHLLHEIAKTDHLEFRAALRARCETLEGILEKANEPVYAVV
Ga0335077_120160871	3300033158	Soil	LGPLTRRAYNYVVSMETMEVAMELRLSDEEQELLLELLREQHKHLLHEINKAHHHDFKVGLRTRCTMVEGIIEKLQAVHSV
Ga0326728_100001094	3300033402	Peat Soil	MELRLTDKEHDVLLESLQEQHKHLLHDIAKADHHEFREALRDRCTALEGVLEKLRVPVHSAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082104

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences