Metagenome / Metatranscriptome Family F081934

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081934
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	63 residues
Representative Sequence	MERKADEEICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPLNEQSALAEAVKDSPAG
Number of Associated Samples	85
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.88 %
% of genes near scaffold ends (potentially truncated)	20.18 %
% of genes from short scaffolds (< 2000 bps)	76.32 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.754 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (23.684 % of family members)
Environment Ontology (ENVO)	Unclassified (41.228 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.123 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.47% β-sheet: 7.87% Coil/Unstructured: 69.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00589	Phage_integrase	5.26
PF00211	Guanylate_cyc	4.39
PF03734	YkuD	3.51
PF09996	DUF2237	3.51
PF00536	SAM_1	3.51
PF08734	GYD	1.75
PF03061	4HBT	1.75
PF00768	Peptidase_S11	1.75
PF11272	DUF3072	1.75
PF06186	DUF992	1.75
PF13191	AAA_16	1.75
PF13185	GAF_2	0.88
PF01068	DNA_ligase_A_M	0.88
PF07719	TPR_2	0.88
PF00990	GGDEF	0.88
PF12860	PAS_7	0.88
PF13460	NAD_binding_10	0.88
PF09361	Phasin_2	0.88
PF02586	SRAP	0.88
PF04226	Transgly_assoc	0.88
PF02633	Creatininase	0.88
PF01575	MaoC_dehydratas	0.88
PF13476	AAA_23	0.88
PF12680	SnoaL_2	0.88
PF03797	Autotransporter	0.88
PF12200	DUF3597	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	4.39
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	3.51
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	3.51
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.75
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.75
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	0.88
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.88
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.88
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.88
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
All Organisms	root	All Organisms	48.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
cellular organisms	root	All Organisms → cellular organisms	48.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.30 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.39 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.88 %
Mesorhizobium waimense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium waimense	0.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.88 %
Mesorhizobium sp. ORS 3359	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	0.88 %
Mesorhizobium waimense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium waimense	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102GUEC4	Not Available	539	Open in IMG/M
2189573000\|GPBTN7E02GFTHA	Not Available	512	Open in IMG/M
3300000567\|JGI12270J11330_10008234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7147	Open in IMG/M
3300004080\|Ga0062385_10385745	Not Available	833	Open in IMG/M
3300004082\|Ga0062384_100471193	Not Available	826	Open in IMG/M
3300004091\|Ga0062387_101513006	Not Available	539	Open in IMG/M
3300004152\|Ga0062386_100483487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1004	Open in IMG/M
3300006059\|Ga0075017_101145747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300006086\|Ga0075019_10400090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300006102\|Ga0075015_100891441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	539	Open in IMG/M
3300006162\|Ga0075030_100770397	Not Available	760	Open in IMG/M
3300009519\|Ga0116108_1015776	Not Available	2683	Open in IMG/M
3300009523\|Ga0116221_1046975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2032	Open in IMG/M
3300009523\|Ga0116221_1397448	Not Available	600	Open in IMG/M
3300009525\|Ga0116220_10045965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1814	Open in IMG/M
3300009629\|Ga0116119_1120799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300009630\|Ga0116114_1123971	Not Available	672	Open in IMG/M
3300009631\|Ga0116115_1020059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1921	Open in IMG/M
3300009637\|Ga0116118_1133106	All Organisms → cellular organisms → Bacteria → Proteobacteria	814	Open in IMG/M
3300009637\|Ga0116118_1263879	Not Available	526	Open in IMG/M
3300009643\|Ga0116110_1015236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3066	Open in IMG/M
3300009646\|Ga0116132_1117032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300009672\|Ga0116215_1207688	Not Available	862	Open in IMG/M
3300009672\|Ga0116215_1509006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300009683\|Ga0116224_10163082	Not Available	1072	Open in IMG/M
3300009700\|Ga0116217_10052600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2942	Open in IMG/M
3300009764\|Ga0116134_1050440	All Organisms → cellular organisms → Bacteria	1592	Open in IMG/M
3300010343\|Ga0074044_10574928	Not Available	736	Open in IMG/M
3300010371\|Ga0134125_10712918	Not Available	1106	Open in IMG/M
3300010379\|Ga0136449_100191720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3909	Open in IMG/M
3300010379\|Ga0136449_100288438	Not Available	3006	Open in IMG/M
3300010379\|Ga0136449_100830114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1521	Open in IMG/M
3300010379\|Ga0136449_101269733	Not Available	1151	Open in IMG/M
3300010379\|Ga0136449_102978951	Not Available	662	Open in IMG/M
3300010379\|Ga0136449_103238741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	628	Open in IMG/M
3300010379\|Ga0136449_104684497	Not Available	500	Open in IMG/M
3300014156\|Ga0181518_10013295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6122	Open in IMG/M
3300014156\|Ga0181518_10274980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	847	Open in IMG/M
3300014156\|Ga0181518_10307890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300014159\|Ga0181530_10538356	Not Available	577	Open in IMG/M
3300014164\|Ga0181532_10337880	Not Available	846	Open in IMG/M
3300014165\|Ga0181523_10035429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3184	Open in IMG/M
3300014200\|Ga0181526_10019865	Not Available	4423	Open in IMG/M
3300014201\|Ga0181537_10097793	Not Available	1996	Open in IMG/M
3300014489\|Ga0182018_10004428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11800	Open in IMG/M
3300014489\|Ga0182018_10051310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2522	Open in IMG/M
3300014495\|Ga0182015_10648492	Not Available	668	Open in IMG/M
3300016750\|Ga0181505_10460699	Not Available	554	Open in IMG/M
3300017822\|Ga0187802_10218583	Not Available	734	Open in IMG/M
3300017822\|Ga0187802_10278894	Not Available	650	Open in IMG/M
3300017822\|Ga0187802_10370994	Not Available	564	Open in IMG/M
3300017823\|Ga0187818_10241656	Not Available	789	Open in IMG/M
3300017924\|Ga0187820_1048394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1144	Open in IMG/M
3300017925\|Ga0187856_1011833	All Organisms → cellular organisms → Bacteria → Proteobacteria	4934	Open in IMG/M
3300017925\|Ga0187856_1213316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	694	Open in IMG/M
3300017931\|Ga0187877_1137339	Not Available	991	Open in IMG/M
3300017932\|Ga0187814_10230157	Not Available	700	Open in IMG/M
3300017934\|Ga0187803_10234720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium waimense	725	Open in IMG/M
3300017943\|Ga0187819_10752788	Not Available	548	Open in IMG/M
3300017946\|Ga0187879_10037617	Not Available	2898	Open in IMG/M
3300017946\|Ga0187879_10051513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2424	Open in IMG/M
3300017946\|Ga0187879_10091155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1753	Open in IMG/M
3300017955\|Ga0187817_10182067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1338	Open in IMG/M
3300017955\|Ga0187817_10307125	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300017955\|Ga0187817_10751953	Not Available	622	Open in IMG/M
3300017995\|Ga0187816_10431696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	588	Open in IMG/M
3300017998\|Ga0187870_1335958	Not Available	501	Open in IMG/M
3300018001\|Ga0187815_10283113	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300018001\|Ga0187815_10475334	Not Available	535	Open in IMG/M
3300018007\|Ga0187805_10378302	Not Available	656	Open in IMG/M
3300018013\|Ga0187873_1115387	Not Available	1050	Open in IMG/M
3300018017\|Ga0187872_10357085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	626	Open in IMG/M
3300018022\|Ga0187864_10346792	Not Available	651	Open in IMG/M
3300018040\|Ga0187862_10104479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1958	Open in IMG/M
3300018085\|Ga0187772_11110349	Not Available	580	Open in IMG/M
3300018086\|Ga0187769_10932903	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300018090\|Ga0187770_11526144	Not Available	544	Open in IMG/M
3300020579\|Ga0210407_10707672	Not Available	781	Open in IMG/M
3300020583\|Ga0210401_11630654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	503	Open in IMG/M
3300021168\|Ga0210406_11239792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300021178\|Ga0210408_10013436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6698	Open in IMG/M
3300021178\|Ga0210408_10276535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1338	Open in IMG/M
3300021403\|Ga0210397_11591640	Not Available	507	Open in IMG/M
3300021432\|Ga0210384_11116178	Not Available	692	Open in IMG/M
3300021478\|Ga0210402_10660101	Not Available	968	Open in IMG/M
3300022533\|Ga0242662_10288143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300025507\|Ga0208188_1085694	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300025928\|Ga0207700_11568492	Not Available	583	Open in IMG/M
3300027625\|Ga0208044_1004548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6012	Open in IMG/M
3300027829\|Ga0209773_10188812	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300027854\|Ga0209517_10363493	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300027854\|Ga0209517_10660629	Not Available	544	Open in IMG/M
3300027898\|Ga0209067_10317385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	859	Open in IMG/M
3300028906\|Ga0308309_11429112	Not Available	592	Open in IMG/M
3300029817\|Ga0247275_1106079	Not Available	739	Open in IMG/M
3300030524\|Ga0311357_11580210	Not Available	552	Open in IMG/M
3300030580\|Ga0311355_10993701	Not Available	755	Open in IMG/M
3300030707\|Ga0310038_10041667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2651	Open in IMG/M
3300031231\|Ga0170824_103589483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	534	Open in IMG/M
3300031234\|Ga0302325_10053311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8018	Open in IMG/M
3300031236\|Ga0302324_101139518	Not Available	1045	Open in IMG/M
3300031708\|Ga0310686_109298380	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300031823\|Ga0307478_11109842	Not Available	660	Open in IMG/M
3300032160\|Ga0311301_10065636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7806	Open in IMG/M
3300032160\|Ga0311301_10110692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5269	Open in IMG/M
3300032160\|Ga0311301_10168608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3878	Open in IMG/M
3300032160\|Ga0311301_10271433	All Organisms → cellular organisms → Bacteria	2760	Open in IMG/M
3300032160\|Ga0311301_10374734	Not Available	2202	Open in IMG/M
3300032160\|Ga0311301_11913034	Not Available	698	Open in IMG/M
3300032805\|Ga0335078_10969182	Not Available	1012	Open in IMG/M
3300032892\|Ga0335081_10730090	Not Available	1196	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.88%
Aquatic	Environmental → Aquatic	49.12%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.37%
Freshwater	Environmental → Aquatic → Freshwater	44.74%
Sediment	Environmental → Aquatic → Sediment	4.39%
Peat	Environmental → Terrestrial → Peat	3.51%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	44.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.39%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.51%
Loam	Environmental → Terrestrial → Soil → Loam	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.32%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	13.16%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.39%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.51%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.88%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	23.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	13.16%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.40%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.02%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.39%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.39%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.51%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.63%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	2.63%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_02314670	2170459002	Grass Soil	MERKPDEEVCLFVRDGQTRRLLFNVKALQALGINAVEARQRGYPIKEQPPMAEAAEDFTA
N55_06120460	2189573000	Grass Soil	VERKPDEEVCLFVRDQQTRRFLFNVKALQALGISPVKAEQRGYLIDVRPPLAEAEKDLTA
JGI12270J11330_100082343	3300000567	Peatlands Soil	MERKADEEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPLNEQSALAEAVKDSPAG*
Ga0062385_103857452	3300004080	Bog Forest Soil	MERQLDEEVCLFVRDRQTGRFLFNAEALQALGFDLLEVQQRGYRLKQQSALVEKVETSPPVSHTHKS*
Ga0062384_1004711932	3300004082	Bog Forest Soil	MEIDEEICLFVRDEQTGRFLFNAEALQALGIDPLEVQQRGYRLKQQSALAEKVETSPPVSHTHKS*
Ga0062387_1015130061	3300004091	Bog Forest Soil	MEREIDEEICLFVRDEQTGRFLFNAEALQALGIDPLEVQQRGYRLKQQSALAEKVETSPPVSHTHKS*
Ga0062386_1004834873	3300004152	Bog Forest Soil	MENKTDDEICLFVRDEQTGHFLYNAKALQVLGIDPMKAQQRGYPLNEQSALTEQVKGLPRRLAD
Ga0075017_1011457472	3300006059	Watersheds	MERKSDEEISLFVRDRQTGRFLYNAKALQALGINPAEAQQRGYPMEEQSAMAGAAEGLAAGSG
Ga0075019_104000902	3300006086	Watersheds	MERQSNEQISLFVRDKQTGRFVFNAKALQALGIRPLEAQQSGYQMKQQSALADATALTQPSS*
Ga0075015_1008914412	3300006102	Watersheds	VWGEKVERKPDEEICLFVRDEQTRRFLFNVKALQALGINAVEASQRGYPMTGQPIMAEAEEGLTAA*
Ga0075030_1007703971	3300006162	Watersheds	MKPKLDEEICLFVRDEQSGRFLFNPMALQVLGINPTEARQRGYPMKEQSALAEAAEDLTVG*
Ga0116108_10157762	3300009519	Peatland	MMVTQSDEEISLFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQSALADAVKESPSG*
Ga0116221_10469751	3300009523	Peatlands Soil	RVMENKTDDEICLFVRDEQTGRFLYNAKALQVLGIDPVKAQQRGYPLNEQSALAEQVKDFPAG*
Ga0116221_13974481	3300009523	Peatlands Soil	MENKTDDEICLFVRDEQTGRFLYNATALQVLGIDPVEAQQRGYRVKEQSALSEAVKDFTAG*
Ga0116220_100459656	3300009525	Peatlands Soil	VWGEKVERKPDEEIYLFVRDEQTRRFLFNVKALQALGINAVEASQRGYPMTGQPIMAEAEEGLTAA*
Ga0116119_11207991	3300009629	Peatland	EEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPLNEQSALAEAVKDSPAG*
Ga0116114_11239711	3300009630	Peatland	MMVTQSDEEISLFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQSAL
Ga0116115_10200592	3300009631	Peatland	MERKADEEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPMNEQSALAEAVKDSPAG*
Ga0116118_11331062	3300009637	Peatland	MERKADEEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPLNEQSALAE
Ga0116118_12638791	3300009637	Peatland	MENMTDEEICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPLNEQSALAEAARNFTAD*
Ga0116110_10152362	3300009643	Peatland	MENKTDDEICLFVRDEQTGRFLYNAKALQVLGIDPVKAQQRGYPLNEQSALTEQVKGLPRRLADMPVSTN*
Ga0116132_11170321	3300009646	Peatland	MENKTDDEICLFVRDEQIGRFLYNAKTLQVLGIDPMKAQQRGYPLNEQSALTEQVKGLPRRLADMPVSTN*
Ga0116215_12076881	3300009672	Peatlands Soil	MERKADEEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPLNQQSALAEAVKDSPAG*
Ga0116215_15090062	3300009672	Peatlands Soil	MERQSNEQISLFVRDKQTGRFVFNAKALQALGISPLEAQQSGYQMKQQSALADATALTQPSS*
Ga0116224_101630821	3300009683	Peatlands Soil	MMVTQSDEEICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYRLKEQPALAGAVIESPSG*
Ga0116217_100526002	3300009700	Peatlands Soil	MERKADEEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPLNEKSALAEAVKDSPAG*
Ga0116134_10504404	3300009764	Peatland	MERNSGEEICLFVRDEQTGRFLFNAKALQALGINPVEAKERGYLMKGQSASADVAGGTNPPS*
Ga0074044_105749282	3300010343	Bog Forest Soil	MEKMENKTDEEICLFVRDEQTGRFQFNAKALQALGINPVEAQQRGYPLNEQSALAEAVRDFPAG*
Ga0134125_107129183	3300010371	Terrestrial Soil	LFLSDEQTGRFLFNAKALQALGINLVDAQQCGYRMNEQSALAEAAEDPSTGWLPPLLTRKMR*
Ga0136449_1001917204	3300010379	Peatlands Soil	MMERKADEKICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPTKEQSALVEAVKDFPAG*
Ga0136449_1002884383	3300010379	Peatlands Soil	MVTQSDEEISPFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQPALAGAVIESPSG*
Ga0136449_1005815722	3300010379	Peatlands Soil	MPRKSNEEICLFVRDEQTGRLLFNAEALQALGINPTEAQQRGYPIKEKSALPRQLRTLTADRPHT*
Ga0136449_1008301141	3300010379	Peatlands Soil	MENKTDDEICLFVRDEQTGRFLYNAKALQVLGIDPVKAQQRGYPLNEQSALAEQVKDFPAG*
Ga0136449_1012697332	3300010379	Peatlands Soil	MERKADEEICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPLNEQSALAEAVKDSPAG*
Ga0136449_1029789512	3300010379	Peatlands Soil	MERQSDEEISLFVRDEKTGRFLFNAKALRALGINPVEAQQRGYRTKEQSALAEAAEAAQVNHHA*
Ga0136449_1032387412	3300010379	Peatlands Soil	MQRKTDEEICLFVRDEQTGRFVFNAKALQALGINPAEAQQRGYPLREQPTLAEAGEHSPAG*
Ga0136449_1046844971	3300010379	Peatlands Soil	MMERKADEEICLFVRDEQTGRFLFNTKALQALGINPAEAEQRGYPLQEQSALDEAVKDFPAG*
Ga0181518_100132956	3300014156	Bog	MMDRKSDEEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYTLTEQSALSAAEKDFAAGERPRKGPSVT*
Ga0181518_102749802	3300014156	Bog	MMVTQSDEEISLFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQSALAEAVKESPSG*
Ga0181518_103078902	3300014156	Bog	MENKTDDEICLFVRDEQIGRFLYNAKALQVLGIDPVKAQQRGYPLNEQSALTEQVKGLPRRLADMPVSTN*
Ga0181530_105383561	3300014159	Bog	MENKTDDEICLFVRDEQIGRFLYNAKTLQVLGIDPMKAQQRGYPLNEQSALTEQVKGLPR
Ga0181532_103378802	3300014164	Bog	MDCRLKGQGFGAVWERMMERKADEEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYPLTEQSALTAAEKDFAAGERPHKGPSVT*
Ga0181523_100354292	3300014165	Bog	VNRKSDEEICLFVRDEQSGRFLFNAKELQALGINPVEAQQRGYPLKEQSALAEAVKDLPRRL*
Ga0181526_100198654	3300014200	Bog	MMVTQSDEEISLFVRDEQSGRFLFNPKALQALGINPVEAQQRGYRLKEQSALADAVKESPSG*
Ga0181537_100977933	3300014201	Bog	MDRKSGEEIPLFVRDERTGRFLFNAEALKALGINPLEAQQRGYPMKGQPALAETAEDFTVGYSSA*
Ga0182018_1000442813	3300014489	Palsa	VERKSGEGISLFVRDERTGRFLFNAKALKALGINPAAAQQRGYPMKEKSALAETARDLSAG*
Ga0182018_100513104	3300014489	Palsa	MDRKWGEEISLFVRDERTGRFLFNAKALQALGINPVAAHQRGYPMKENSALAE
Ga0182015_106484921	3300014495	Palsa	MDRKWGEEISLFVRDERTGRFLFNAKALQALGINPVAAHQRGYPMKENSALAETARLALPQDRCR*
Ga0181505_104606991	3300016750	Peatland	CERTVNRKSDEEICLFVRDEQSGRFLFNAKELQALGINPVEAQQRGYPLKEQSALAEAVKDLPRRL
Ga0187802_102185831	3300017822	Freshwater Sediment	MVERKSDEEICLFVRDEHTGRFLFNAKALQALGINPAEAQQRGYPLQEQSALDEAVEEFTAG
Ga0187802_102788942	3300017822	Freshwater Sediment	MMDRKSDEEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYPLTEQSALTEAVKDFTAG
Ga0187802_103709942	3300017822	Freshwater Sediment	MERQSDDQISLFVRDERTGRLVSNAKALQALGINPLEAQQCGYRMKEQSALADATGLT
Ga0187818_102416562	3300017823	Freshwater Sediment	MVDRKSDKEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYPLTEQSALTEAVKDFTAG
Ga0187820_10483942	3300017924	Freshwater Sediment	MKPKLDEEICLFVRDKQSGRFLFNPMALQVLGINPTEARQRGYPMKEQSALAEAAEDLTV
Ga0187856_10118334	3300017925	Peatland	MERKADEEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPLNEQSALAEAVKDSPA
Ga0187856_12133162	3300017925	Peatland	MENMTDEEICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPLNEQSALAEAARNFTA
Ga0187877_11373392	3300017931	Peatland	MVTQSDEEISLFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQSALADAVKESPS
Ga0187814_102301571	3300017932	Freshwater Sediment	MKPTLDEEICLFVRDEQSGRFLFNPVALQVLGINPTEARQCGYPMKEQSALAEAAEDIKV
Ga0187803_102347201	3300017934	Freshwater Sediment	MMDRKSDEEICLFVRDEHTGRFLFNAKALQALGINPAEAQQRGYPLQEQSALDEAVEEFTAG
Ga0187819_107527882	3300017943	Freshwater Sediment	MVDRKSDEEICLFVRDEQTGRFLLNAKALQALEINPVEAQERGYPLTEQSALTEAVKDFTAG
Ga0187879_100376175	3300017946	Peatland	MMVTQSDEEISLFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQSALADAVKESPSG
Ga0187879_100515132	3300017946	Peatland	MERKSGEEISLFVRDEQTGRFLFNAKALQALGINPVAAQQRGYPLNGLSAVLAEAVEDVQASGHARAL
Ga0187879_100911552	3300017946	Peatland	MENKTDDEICLFVRDEQTGRFLYNAKALQVLGIDPVKAQQRGYPLNEQSALAEQVKDFPA
Ga0187817_101820671	3300017955	Freshwater Sediment	MVDRTSDEEICLFVRDGQTGRFLFNAKALQALGINPVEAQERGYPLTEQSALTAAEKDFAAGERRRKGPSVT
Ga0187817_103071252	3300017955	Freshwater Sediment	MVERKSDEEICLFVRDERTGGLLFNAKALQALGINPAEAQQRGYPLQKQSALDEAVEEFTAG
Ga0187817_107519531	3300017955	Freshwater Sediment	MDRRLKTGRWCGVGRIMKPKLDEEICLFVRDGQSGRFLFNPTTLQALGINPTEPRQRTMKEQSALAKAAEDLTVG
Ga0187816_104316962	3300017995	Freshwater Sediment	MERKLGEEICLFVRDEQTGRFVFNTKALWALGINPAEAQQRGYPMKEQFALAETVKDFP
Ga0187870_13359581	3300017998	Peatland	TQSDEEISLFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQSALADAVKESPSG
Ga0187815_102831132	3300018001	Freshwater Sediment	MMDRKSDEEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYPLTEQSALTAAEKDFAAGERRRKGPSVT
Ga0187815_104753341	3300018001	Freshwater Sediment	CKKVTTHSFLSKSDEEIYLFVRDEQSGRFLFNPMALQVWGINPAEAQQRGYPMKEQSALADAAEDLTAG
Ga0187805_103783021	3300018007	Freshwater Sediment	MMDRKSDEEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYPLTEQSALTAAEKDFAAGERRRKGP
Ga0187873_11153872	3300018013	Peatland	WERMMVTQSDEEISLFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQSALADAVKESPSG
Ga0187872_103570851	3300018017	Peatland	MENMTDEEICLFVRDEPTGRFLFNAKALQPLGINPVEAQQRGYPLNEQSALAEAVRDFPA
Ga0187864_103467921	3300018022	Peatland	MVTQSDEEISLFVRDEQSGRCLFNAKALQALGINPVEAQQRGYRLKEQSALADAVKESPS
Ga0187855_108678771	3300018038	Peatland	SLFVRDEQTGRFLFNAKALQALGINPVAAQQRGYPLNGLSAVLAEAVEDVQASGHARAL
Ga0187862_101044792	3300018040	Peatland	MENKTDDEICLFVRDEQIGRFLYNAKTLQVLGIDPMKAQQRGYPLNEQSALAEQVKDFPA
Ga0187772_111103491	3300018085	Tropical Peatland	MDRKSDEEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYPLTEQSALTAAEK
Ga0187769_109329031	3300018086	Tropical Peatland	MMDRKSDGEICLFVRDEQTGRFLFNAKALQALGINPVEAQERGYPLTEQSALTAAEKDFAAGERPHKGPSVT
Ga0187770_115261441	3300018090	Tropical Peatland	MMDRKSDGEICLFVRDEQTGRFLINAKALQALGINPVEAQERGYPLTEQSALTAAEKDFAAGERPHKGPSVT
Ga0210407_107076721	3300020579	Soil	VERKPDEEICLFVRDGQTRRFLFNVKALQALGINAVEARQRGYPIKEQPPMAEAEEDLTA
Ga0210401_116306541	3300020583	Soil	MKPKSDEKICLFVRDEHSGRFLFNPMALQILGINPTEARQRGYPIKEQSALAEAAEDLTA
Ga0210406_112397921	3300021168	Soil	MDRRLKAKPWCSVGEKVERKPDEEICLFVRDGQTRRFLFNVKALQALGINAVEARQRGYPLKEQPPMAEAEEDLTAA
Ga0210408_1001343611	3300021178	Soil	VERKPDEEICLFVRDRQTRRFLFNLKALEVLGINAVEAWQRGYLIKEQPPIAEAEEDLTA
Ga0210408_102765352	3300021178	Soil	VGEKVERKPDEEICLFVRDGQTRRFLFNVKALQALGINAVEARQRGYPLKEQPPMAEAEEDLTAA
Ga0210397_115916401	3300021403	Soil	ASIMKPKSDEKICLFVRDEHSGRFLFNPMALQILGINPTEARQRGYPIKEQSALAEAAKDLTAV
Ga0210384_111161782	3300021432	Soil	VHETHRHLRRYLWYSVGEKVERKPDEEICLFVRDRQTRRFLFNLKALEVLGINAVEAWQRGYLIKEQPPIAEAEEDLTAA
Ga0210402_106601012	3300021478	Soil	MDRRLKAKPWCSVGEKVERKPDEEICLFVRDGQTRRFLFNVKALQALGINAVEARQRGYPLKEQPPMAEAEEDLAAA
Ga0242662_102881431	3300022533	Soil	VWGEKVERKPDEEICLFVRDGQTRRFLFNVKALQALGINAVEARQRGYPLKEQPPMAEAEEDLTAA
Ga0208188_10856941	3300025507	Peatland	MERKADEEICLFVRDEQTGRFLFNTKALQALGINPAEAEQRGYPLQEQSALDEAVKDFPA
Ga0207700_115684922	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VDGKPDDEICLFVRDEQTRRFLFNVKALQALGINATKAQQRGYPIERRSPVAEAKKDFPA
Ga0208044_10045481	3300027625	Peatlands Soil	MERKADEEICLFVRDEQTGRFLFNAKALQALGISPVKAQQRGYPLNEKSALAEAVKDSPA
Ga0209773_101888121	3300027829	Bog Forest Soil	MEREIDEEICLFVRDEQTGRFLFNAEALQALGIDPLEVQQRGYRLKQQSALAEKVETSPPVSHTHKS
Ga0209517_103634932	3300027854	Peatlands Soil	VDRKSNEEICLFVRDEQNGRFLFNAKALQALGINPAEAQQRGYPLKELSALAEAVKDLPRRL
Ga0209517_106606291	3300027854	Peatlands Soil	MVTQSDEEISPFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQPALAGA
Ga0209067_103173852	3300027898	Watersheds	MERQSNEQISLFVRDKQTGRFVFNAKALQALGIRPLEAQQSGYQMKQQSALADATALTQPSS
Ga0308309_114291121	3300028906	Soil	MERQSDEEISLFVRDEKTGRFLFNAKALRALGINPVEAQQRGYRTKEQSALAEAAEASAG
Ga0247275_11060792	3300029817	Soil	MVTQSDEEISLFVRDEQSGRFLFNAKALQALGISPVKAQQRGYPLNEQSALAEAVKDSPA
Ga0311357_115802101	3300030524	Palsa	PAWGRMMDKKSGDDISLFVRDKQTGRFLFNAEALKALGIDPLEAQQRGYPMKAQPALPEAAEDFTIG
Ga0311355_109937011	3300030580	Palsa	MERKSGEEICLFVRDEQTGRFLFNATALQALGINPVEAMQRGYPLKGQSAALVEAMEDVQASRNTCVL
Ga0310038_100416673	3300030707	Peatlands Soil	MERKADEEICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPLNEQSALAEAVKDSPA
Ga0170824_1035894831	3300031231	Forest Soil	MWGRIMKPKLDEEICLFVRDEQSGRFLFNPMALQVLGINPTEARQGRYPIKEQSALAEAAEDIKVF
Ga0302325_100533116	3300031234	Palsa	MDKKSGDDISLFVRDKQTGRFLFNAEALKALGIDPLEAQQRGYPMKAQPALPEAAEDFTI
Ga0302324_1011395182	3300031236	Palsa	MDKKSGDDISLFVRDKQTGRFLFNAEALKALGIDPLEAQQRGYPMKAQPALPE
Ga0310686_1092983801	3300031708	Soil	MKPKLDEEICLFVRDEQSGRFLFNPVALQVLGINPTEARQRGYPMKEQSALAKAAG
Ga0307478_111098422	3300031823	Hardwood Forest Soil	MVEGKSDEEIYLFVRDERSGRLRFNARALQALGINPAEAQQRGYPVKEQSALSETAEDLAAG
Ga0311301_100656365	3300032160	Peatlands Soil	VWGEKVERKPDEEICLFVRDEQTRRFLFNVKALQALGINAVEASQRGYPMTGQPIMAEAEEGLTAA
Ga0311301_101106924	3300032160	Peatlands Soil	MERKADEKICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPTKEQSALVEAVKDFPA
Ga0311301_101686083	3300032160	Peatlands Soil	MENKTDDEICLFVRDEQTGRFLYNATALQVLGIDPVEAQQRGYRVKEQSALSEAVKDFTA
Ga0311301_102714332	3300032160	Peatlands Soil	MERQSNEQISLFVRDKQTGRFVFNAKALQALGISPLEAQQSGYQMKQQSALADATALTQPSS
Ga0311301_103747342	3300032160	Peatlands Soil	MVTQSDEEISPFVRDEQSGRFLFNAKALQALGINPVEAQQRGYRLKEQPALAGAVIESPS
Ga0311301_119130342	3300032160	Peatlands Soil	MERKADEEICLFVRDEQTGRFLFNAKALQALGINPVEAQQRGYPLNEQSALAEA
Ga0311301_122218762	3300032160	Peatlands Soil	MPRKSNEEICLFVRDEQTGRLLFNAEALQALGINPTEAQQRGYPIKEKSALPRQLRTLTADRPHT
Ga0335078_109691821	3300032805	Soil	MMQTKSDEEICLFVRDEPSGGFLFNAKALRALGINPVEAERRGYPLKEQSALAEKVRDFTAS
Ga0335081_107300901	3300032892	Soil	MQSNADDEICLFIRDEKTGRFLFNAQALQALGIDPVQALQRGYPLKEQSALAATVKDFTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081934

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences