Metagenome Family F081911

Basic Information
Family ID	F081911
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	48 residues
Representative Sequence	NTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY
Number of Associated Samples	101
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.12 %
% of genes from short scaffolds (< 2000 bps)	91.23 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (72.807 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.526 % of family members)
Environment Ontology (ENVO)	Unclassified (29.825 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00180	Iso_dh	83.33
PF00268	Ribonuc_red_sm	7.89
PF07992	Pyr_redox_2	2.63
PF01575	MaoC_dehydratas	0.88
PF01127	Sdh_cyt	0.88
PF12071	DUF3551	0.88
PF01292	Ni_hydr_CYTB	0.88
PF01734	Patatin	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	7.89
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.88
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.88
COG2009	Succinate dehydrogenase/fumarate reductase, cytochrome b subunit	Energy production and conversion [C]	0.88
COG2142	Succinate dehydrogenase, hydrophobic anchor subunit	Energy production and conversion [C]	0.88
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.88
COG3038	Cytochrome b561	Energy production and conversion [C]	0.88
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.88
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.88
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.88
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
All Organisms	root	All Organisms	27.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
cellular organisms	root	All Organisms → cellular organisms	27.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.32 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.44 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.44 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.81 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.53 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.51 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	3.51 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.88 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	2.63 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.88 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Tylenchina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Panagrolaimomorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Strongyloidoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Strongyloididae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Parastrongyloides	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.53 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.75 %
Parastrongyloides trichosuri	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	0.88 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_106330518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1317	Open in IMG/M
3300001430\|JGI24032J14994_100145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3376	Open in IMG/M
3300001915\|JGI24741J21665_1075174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300004025\|Ga0055433_10069571	Not Available	751	Open in IMG/M
3300004463\|Ga0063356_104960835	Not Available	572	Open in IMG/M
3300004479\|Ga0062595_101877937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	573	Open in IMG/M
3300005104\|Ga0066818_1010404	Not Available	682	Open in IMG/M
3300005336\|Ga0070680_100864841	Not Available	780	Open in IMG/M
3300005336\|Ga0070680_101725699	Not Available	543	Open in IMG/M
3300005337\|Ga0070682_100055025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2498	Open in IMG/M
3300005337\|Ga0070682_100325133	Not Available	1137	Open in IMG/M
3300005341\|Ga0070691_10147133	Not Available	1205	Open in IMG/M
3300005356\|Ga0070674_101633858	Not Available	582	Open in IMG/M
3300005439\|Ga0070711_101819085	Not Available	534	Open in IMG/M
3300005468\|Ga0070707_101664620	Not Available	605	Open in IMG/M
3300005530\|Ga0070679_102026881	Not Available	525	Open in IMG/M
3300005564\|Ga0070664_100772509	Not Available	897	Open in IMG/M
3300005577\|Ga0068857_100105638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2528	Open in IMG/M
3300005764\|Ga0066903_102786110	Not Available	948	Open in IMG/M
3300006871\|Ga0075434_101168370	Not Available	782	Open in IMG/M
3300006880\|Ga0075429_100924817	Not Available	763	Open in IMG/M
3300006903\|Ga0075426_10230382	Not Available	1346	Open in IMG/M
3300006904\|Ga0075424_102340799	Not Available	561	Open in IMG/M
3300009093\|Ga0105240_10906271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	948	Open in IMG/M
3300009094\|Ga0111539_10205028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	2299	Open in IMG/M
3300009098\|Ga0105245_10650212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1084	Open in IMG/M
3300009098\|Ga0105245_11319390	Not Available	771	Open in IMG/M
3300009174\|Ga0105241_10763366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	888	Open in IMG/M
3300009176\|Ga0105242_10236451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1640	Open in IMG/M
3300009545\|Ga0105237_11345202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	720	Open in IMG/M
3300009553\|Ga0105249_11217240	Not Available	824	Open in IMG/M
3300010043\|Ga0126380_10086642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1834	Open in IMG/M
3300010047\|Ga0126382_11640935	Not Available	598	Open in IMG/M
3300010371\|Ga0134125_12954383	Not Available	516	Open in IMG/M
3300010373\|Ga0134128_11422803	Not Available	764	Open in IMG/M
3300010373\|Ga0134128_11568344	Not Available	725	Open in IMG/M
3300010375\|Ga0105239_11127678	Not Available	903	Open in IMG/M
3300010379\|Ga0136449_100566835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1947	Open in IMG/M
3300010379\|Ga0136449_103299935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	621	Open in IMG/M
3300010399\|Ga0134127_10947199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	919	Open in IMG/M
3300012477\|Ga0157336_1036570	Not Available	513	Open in IMG/M
3300012483\|Ga0157337_1006797	Not Available	801	Open in IMG/M
3300012489\|Ga0157349_1045430	Not Available	507	Open in IMG/M
3300012490\|Ga0157322_1015066	Not Available	684	Open in IMG/M
3300012498\|Ga0157345_1031512	Not Available	597	Open in IMG/M
3300012885\|Ga0157287_1003503	Not Available	1468	Open in IMG/M
3300012908\|Ga0157286_10068580	Not Available	963	Open in IMG/M
3300012948\|Ga0126375_10012781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3636	Open in IMG/M
3300012948\|Ga0126375_11778406	Not Available	537	Open in IMG/M
3300012955\|Ga0164298_10356297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300012957\|Ga0164303_10211771	Not Available	1082	Open in IMG/M
3300012984\|Ga0164309_10421567	Not Available	1001	Open in IMG/M
3300012984\|Ga0164309_11517874	Not Available	573	Open in IMG/M
3300013102\|Ga0157371_11211140	Not Available	582	Open in IMG/M
3300013105\|Ga0157369_11737904	Not Available	634	Open in IMG/M
3300013105\|Ga0157369_12581869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300013296\|Ga0157374_11601893	Not Available	675	Open in IMG/M
3300013296\|Ga0157374_11844608	Not Available	630	Open in IMG/M
3300013296\|Ga0157374_12445079	Not Available	550	Open in IMG/M
3300013307\|Ga0157372_10804685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1092	Open in IMG/M
3300014325\|Ga0163163_10140460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2458	Open in IMG/M
3300015077\|Ga0173483_10671049	Not Available	581	Open in IMG/M
3300015372\|Ga0132256_101876376	Not Available	707	Open in IMG/M
3300015373\|Ga0132257_103786904	Not Available	550	Open in IMG/M
3300017944\|Ga0187786_10217043	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	737	Open in IMG/M
3300017947\|Ga0187785_10114864	Not Available	1093	Open in IMG/M
3300017973\|Ga0187780_10201429	Not Available	1388	Open in IMG/M
3300018032\|Ga0187788_10319928	Not Available	633	Open in IMG/M
3300018058\|Ga0187766_10896426	Not Available	625	Open in IMG/M
3300019877\|Ga0193722_1046322	Not Available	1106	Open in IMG/M
3300019879\|Ga0193723_1023148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1896	Open in IMG/M
3300021560\|Ga0126371_11788107	Not Available	736	Open in IMG/M
3300021560\|Ga0126371_13244874	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300025227\|Ga0207638_1006897	Not Available	517	Open in IMG/M
3300025560\|Ga0210108_1039226	Not Available	894	Open in IMG/M
3300025728\|Ga0207655_1122483	Not Available	859	Open in IMG/M
3300025916\|Ga0207663_11535064	Not Available	536	Open in IMG/M
3300025922\|Ga0207646_11413277	Not Available	605	Open in IMG/M
3300025925\|Ga0207650_11568238	Not Available	559	Open in IMG/M
3300025936\|Ga0207670_11012326	Not Available	699	Open in IMG/M
3300025937\|Ga0207669_11709669	Not Available	537	Open in IMG/M
3300025941\|Ga0207711_10046325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3715	Open in IMG/M
3300025941\|Ga0207711_11386693	Not Available	645	Open in IMG/M
3300025945\|Ga0207679_10286103	Not Available	1415	Open in IMG/M
3300026041\|Ga0207639_11170699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	721	Open in IMG/M
3300026116\|Ga0207674_11068622	Not Available	776	Open in IMG/M
3300026772\|Ga0207596_105618	Not Available	534	Open in IMG/M
3300026853\|Ga0207443_1012335	Not Available	510	Open in IMG/M
3300026898\|Ga0207788_1025086	Not Available	526	Open in IMG/M
3300026904\|Ga0207584_1001578	Not Available	846	Open in IMG/M
3300027003\|Ga0207722_1000483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5555	Open in IMG/M
3300027036\|Ga0207467_1023206	Not Available	532	Open in IMG/M
3300027364\|Ga0209967_1003985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1949	Open in IMG/M
3300027665\|Ga0209983_1037686	Not Available	1041	Open in IMG/M
3300027682\|Ga0209971_1174359	Not Available	530	Open in IMG/M
3300028587\|Ga0247828_10386252	Not Available	801	Open in IMG/M
3300028711\|Ga0307293_10211348	Not Available	617	Open in IMG/M
3300028875\|Ga0307289_10087280	Not Available	1267	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1090031	Not Available	745	Open in IMG/M
3300031474\|Ga0170818_112369589	Not Available	815	Open in IMG/M
3300031716\|Ga0310813_11331604	Not Available	664	Open in IMG/M
3300031720\|Ga0307469_12417763	Not Available	513	Open in IMG/M
3300031724\|Ga0318500_10110093	Not Available	1262	Open in IMG/M
3300031748\|Ga0318492_10149855	Not Available	1176	Open in IMG/M
3300031777\|Ga0318543_10206165	Not Available	873	Open in IMG/M
3300031781\|Ga0318547_10003817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6170	Open in IMG/M
3300032025\|Ga0318507_10123320	Not Available	1095	Open in IMG/M
3300032051\|Ga0318532_10074383	Not Available	1184	Open in IMG/M
3300032174\|Ga0307470_10754108	Not Available	748	Open in IMG/M
3300032174\|Ga0307470_11168160	Not Available	623	Open in IMG/M
3300032180\|Ga0307471_101661991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	793	Open in IMG/M
3300032261\|Ga0306920_100203640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2953	Open in IMG/M
3300033289\|Ga0310914_11247029	Not Available	645	Open in IMG/M
3300034090\|Ga0326723_0345392	Not Available	671	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.40%
Host-Associated	Host-Associated	38.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.65%
Plants	Host-Associated → Plants	38.60%
Aquatic	Environmental → Aquatic	1.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.28%
Marine	Environmental → Aquatic → Marine	1.75%
Peat	Environmental → Terrestrial → Peat	0.88%
Roots	Host-Associated → Plants → Roots	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.18%
Loam	Environmental → Terrestrial → Soil → Loam	12.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.40%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.39%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.75%
Sand	Environmental → Terrestrial → Soil → Sand	0.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.39%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.63%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.39%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.39%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.39%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.51%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.51%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.51%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.51%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.75%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.88%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001430	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Environmental	Open in IMG/M
3300001915	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7	Host-Associated	Open in IMG/M
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005104	Soil and rhizosphere microbial communities from Laval, Canada - mgHAC	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025227	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in- M7 (SPAdes)	Host-Associated	Open in IMG/M
3300025560	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025728	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026772	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-12 (SPAdes)	Environmental	Open in IMG/M
3300026853	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 (SPAdes)	Environmental	Open in IMG/M
3300026898	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 (SPAdes)	Environmental	Open in IMG/M
3300026904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081911

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1063305182	3300000955	Soil	PGERVGNTGYIENPNQRAGSVINNTSAGLLNTQSALPGPWTLPFKTNPWIGY*
JGI24032J14994_1001454	3300001430	Corn, Switchgrass And Miscanthus Rhizosphere	NTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY*
JGI24741J21665_10751741	3300001915	Corn Rhizosphere	SYLDPGTETFPGERVGNTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY*
Ga0055433_100695712	3300004025	Natural And Restored Wetlands	ERVGNTGYVENPGQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0063356_1049608351	3300004463	Arabidopsis Thaliana Rhizosphere	NTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0062595_1018779372	3300004479	Soil	HFYAQLPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0066818_10104041	3300005104	Soil	RIGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0070680_1008648411	3300005336	Corn Rhizosphere	PGERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0070680_1017256991	3300005336	Corn Rhizosphere	NPNQYAGSVINNTSAGLYNTSSALPGPWTLPFKSNPWIGY*
Ga0070682_1000550251	3300005337	Corn Rhizosphere	VGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0070682_1003251332	3300005337	Corn Rhizosphere	TGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0070691_101471331	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	KRSYLDPGTETFPGERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0070674_1016338581	3300005356	Miscanthus Rhizosphere	PTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0070711_1018190852	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RSDHFYAQLPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0070707_1016646201	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VGNTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY*
Ga0070679_1020268812	3300005530	Corn Rhizosphere	TGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0070664_1007725091	3300005564	Corn Rhizosphere	ERVGNTGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0068857_1001056381	3300005577	Corn Rhizosphere	RVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0066903_1027861101	3300005764	Tropical Forest Soil	RSFLDPGTETSPGERVRNTGYVENPNQRASSVIDNTSAGLLNTQSALPGPWTLPSKNNPWLQY*
Ga0075434_1011683701	3300006871	Populus Rhizosphere	ERVRNTGYIENPNQRAGSVIDNTAAGIMNNQTALPGPWTLPFKSNPWIGY*
Ga0075429_1009248172	3300006880	Populus Rhizosphere	GYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0075426_102303821	3300006903	Populus Rhizosphere	VGNTGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0075424_1023407991	3300006904	Populus Rhizosphere	QYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0105240_109062712	3300009093	Corn Rhizosphere	GGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0111539_102050283	3300009094	Populus Rhizosphere	GTETFPGERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0105245_106502122	3300009098	Miscanthus Rhizosphere	LDPGTESFPGERSDHFYAQLPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0105245_113193902	3300009098	Miscanthus Rhizosphere	TETFPGERVGNTGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0105241_107633662	3300009174	Corn Rhizosphere	ESFPGERSDHFYAQLPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0105242_102364513	3300009176	Miscanthus Rhizosphere	YVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0105237_113452022	3300009545	Corn Rhizosphere	FYAQLPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0105249_112172402	3300009553	Switchgrass Rhizosphere	TQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0126380_100866423	3300010043	Tropical Forest Soil	SYLDPGTETFPGERVRNTGYIENPNQRASSVINNTSAGLLNTQSALPGPWTLPSKNNPWLGY*
Ga0126382_116409351	3300010047	Tropical Forest Soil	DPGTETFPGERVGNTGYIANPNQRAGGVIDNTSAGLLNTQSALPGPWTLPFKTNPWIGY*
Ga0134125_129543832	3300010371	Terrestrial Soil	FPGERVGNTGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0134128_114228031	3300010373	Terrestrial Soil	ENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0134128_115683441	3300010373	Terrestrial Soil	GERVGNTGYVENPGQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0105239_111276782	3300010375	Corn Rhizosphere	ERVGNTGYVQTMTQTAGSPIDNTSAGLSNRQSPLPGPFTLPSKNNPWLQY*
Ga0136449_1005668351	3300010379	Peatlands Soil	PNQRAAGVLDNTIFGLQNTQSPLPGPWTLPGKNNPWIGY*
Ga0136449_1032999352	3300010379	Peatlands Soil	QRASSVLDSTIFGLSNTQSPLPGPWTLPGKNNPWLQY*
Ga0134127_109471991	3300010399	Terrestrial Soil	FPGERSDHFYAQLPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0157336_10365701	3300012477	Arabidopsis Rhizosphere	YAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0157337_10067971	3300012483	Arabidopsis Rhizosphere	TETFPGERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0157349_10454301	3300012489	Unplanted Soil	YLDPGTETFPGERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0157322_10150662	3300012490	Arabidopsis Rhizosphere	QTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0157345_10315121	3300012498	Arabidopsis Rhizosphere	IENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0157287_10035031	3300012885	Soil	IGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY*
Ga0157286_100685801	3300012908	Soil	SYLDPGTETFPGERVGNTGYVENPGQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY*
Ga0126375_100127816	3300012948	Tropical Forest Soil	ERVGNTGYIENPNQRAGSVINNTSAGLLNTQSALPGPWTLPFKSNPWIGY*
Ga0126375_117784062	3300012948	Tropical Forest Soil	YIENPNQRAGSVINNTSAGLLNTQSALPGPWTLPSKNNPWLGY*
Ga0164298_103562971	3300012955	Soil	QRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0164303_102117712	3300012957	Soil	AGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY*
Ga0164309_104215671	3300012984	Soil	NPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0164309_115178741	3300012984	Soil	NQYAGSVINNTSAGLYNTQSALPGPWTLPSKRNPWIGY*
Ga0157371_112111401	3300013102	Corn Rhizosphere	IENPNQRAGSVIDNTAAGIMNNQTALPGPWTLPFKSNPWIGY*
Ga0157369_117379041	3300013105	Corn Rhizosphere	KRSYLDPGTETFPGERVGNTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY*
Ga0157369_125818691	3300013105	Corn Rhizosphere	KRSFLDPGTETFPGERVGNTGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0157374_116018932	3300013296	Miscanthus Rhizosphere	GSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0157374_118446082	3300013296	Miscanthus Rhizosphere	DPGTETFPGERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPSKRNPWIGY*
Ga0157374_124450792	3300013296	Miscanthus Rhizosphere	PGERVRNTGYIENPNQRAGSVIDNTAAGIMNNQTALPGPWTLPFKSNPWIGY*
Ga0157372_108046851	3300013307	Corn Rhizosphere	AGGVIDNTSAVLLNTHSALPGPWTLPSKNNPWLFY*
Ga0163163_101404603	3300014325	Switchgrass Rhizosphere	QNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0173483_106710492	3300015077	Soil	NTGYIENPGQYAGSVINNTSAGLYNTSSALPGPWTLPFKSNPWIGY*
Ga0132256_1018763761	3300015372	Arabidopsis Rhizosphere	AGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0132257_1037869042	3300015373	Arabidopsis Rhizosphere	GERVGNTGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY*
Ga0187786_102170431	3300017944	Tropical Peatland	PGTETFPGERSDHYYIENPNHRAGSTIDNTSAGLLNTQSALPGPWTLPSKNNPWLFGP
Ga0187785_101148642	3300017947	Tropical Peatland	DPGTETFPGERVGNTGYVENPNQRASGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLQY
Ga0187780_102014291	3300017973	Tropical Peatland	PNHRAAGVVDNTSAGLYNTQSALPGPWTLPGKNNPWIFGP
Ga0187788_103199281	3300018032	Tropical Peatland	RASGVLDNTPAGLLNTQSALPGPWTLPSKNNPWLQY
Ga0187766_108964261	3300018058	Tropical Peatland	TGFIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPGKNNPWIGY
Ga0193722_10463221	3300019877	Soil	GERVGNTGYVQTPTQTAGSVINNTSAGLSNTQSALPGPFTLPSKNNPWLQY
Ga0193723_10231481	3300019879	Soil	LNPGTETFPGERVGNTGYVQTPTQTAGSVINNTSAGLSNTQSALPGPFTLPSKNNPWLQY
Ga0126371_117881072	3300021560	Tropical Forest Soil	ERVGNTGYVQNATQTAGSVIDNTSAGLSNTQSALPGPFTLPSKNNPWLQY
Ga0126371_132448742	3300021560	Tropical Forest Soil	GTETFPGERVGNTAYIENPNQRASSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY
Ga0207638_10068972	3300025227	Corn, Switchgrass And Miscanthus Rhizosphere	ERVGNTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY
Ga0210108_10392262	3300025560	Natural And Restored Wetlands	GTETFPGEHGRNTDYVERPNQRASGVLDNTPAGLYNTQSALPGPWTLPSKNNPWLQY
Ga0207655_11224832	3300025728	Miscanthus Rhizosphere	TETFPGERVGNTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY
Ga0207663_115350641	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LDPGTETFPGERVGNTGYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY
Ga0207646_114132771	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VGNTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY
Ga0207650_115682382	3300025925	Switchgrass Rhizosphere	TQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY
Ga0207670_110123262	3300025936	Switchgrass Rhizosphere	VQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY
Ga0207669_117096691	3300025937	Miscanthus Rhizosphere	GYVQNPTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY
Ga0207711_100463255	3300025941	Switchgrass Rhizosphere	VGNTGYIENPNQYAGSVINNTSAGLYNTSSALPGPWTLPFKSNPWIGY
Ga0207711_113866931	3300025941	Switchgrass Rhizosphere	TAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY
Ga0207679_102861031	3300025945	Corn Rhizosphere	YLDPGTESFPGERVRNTGYIENPNQRAGSVIDNTAAGIMNNQTALPGPWTLPFKSNPWIG
Ga0207639_111706992	3300026041	Corn Rhizosphere	QKRSFLDPGTETFPGERVGNTGYVQNPTQTAGSVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY
Ga0207674_110686221	3300026116	Corn Rhizosphere	ERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0207596_1056181	3300026772	Soil	RVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0207443_10123352	3300026853	Soil	ENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0207788_10250862	3300026898	Tropical Forest Soil	HFYAELPNHRAAGVVDNTSAGLYNTQSALPGPFTLPFKNSPWLQY
Ga0207584_10015781	3300026904	Soil	GYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY
Ga0207722_10004831	3300027003	Tropical Forest Soil	HRAGGVIDNTIYGLTNTQSPLPGPWTLPGKNNPWIGY
Ga0207467_10232061	3300027036	Soil	GYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0209967_10039853	3300027364	Arabidopsis Thaliana Rhizosphere	IENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0209983_10376861	3300027665	Arabidopsis Thaliana Rhizosphere	YIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0209971_11743591	3300027682	Arabidopsis Thaliana Rhizosphere	QTFPGERIGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0247828_103862522	3300028587	Soil	IGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY
Ga0307293_102113481	3300028711	Soil	IGNTGYVQNPTQTAGSVIDNTSAGLSNTQSALPGPFTLPSKNNPWLQY
Ga0307289_100872801	3300028875	Soil	FPGERVGNTGYVQTPTQTAGSVINNTSAGLSNTQSALPGPFTLPSKNNPWLQY
(restricted) Ga0255312_10900312	3300031248	Sandy Soil	PGERVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0170818_1123695892	3300031474	Forest Soil	ETFPGERVGNTGYIENPNQYAGSVLNNTSAGLYNTQSALPGPWTLPSKRNPWIGY
Ga0310813_113316041	3300031716	Soil	YAQLPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY
Ga0307469_124177632	3300031720	Hardwood Forest Soil	ERVGNTGYIENPNQRAGSVINNTSAGLLNTQSALPGPWTLPFKTNPWIGY
Ga0318500_101100932	3300031724	Soil	PNHRAGGVIDNTIYGLTNTQSPLPGPWTLPGKNNPWIGY
Ga0318492_101498551	3300031748	Soil	LDPGTETFPGERVGNIGYVQNPTQTAGSVIDNTSAGLLNKQSPLPGPWTLPSKNNPWIQY
Ga0318543_102061652	3300031777	Soil	ETFPGEHISSTDYVWLPNHRAGGVIDNTIYGLENTQSPLPGPWTLPGKNNPWIGY
Ga0318547_100038171	3300031781	Soil	SFLDPGTETFPGERVGNIGYVQNPTQTAGSVIDNTSAGLLNRQSPLPGPWTLPSKNNPWIQY
Ga0318507_101233201	3300032025	Soil	ISSTDYVWLPNHRAGGVIDNTIYGLENTQSPLPGPWTLPGKNNPWIGY
Ga0318532_100743832	3300032051	Soil	NHRAGGVIDNTIYGLENTQSPLPGPWTLPGKNNPWIGY
Ga0307470_107541082	3300032174	Hardwood Forest Soil	PTQTAGSVIDNTSAGLNNRQSPLPGPFTLPSKNNPWLQY
Ga0307470_111681602	3300032174	Hardwood Forest Soil	FYAELPNQRAGGVIDNTSAGLLNTQSALPGPWTLPSRNNPWLFY
Ga0307471_1016619911	3300032180	Hardwood Forest Soil	NQRAGGVIDNTSAGLLNTQSALPGPWTLPSKNNPWLFY
Ga0306920_1002036405	3300032261	Soil	AGGVIDNTIYGLENTQSPLPGPWTLPGKNNPWIGY
Ga0310914_112470291	3300033289	Soil	ETSPGERVRNTGYVENPNQRASSVIDNTSAGLLNTQSALPGPWTLPSKNNPWLQY
Ga0326723_0345392_504_671	3300034090	Peat Soil	ETFPGEHGRNTDYVERPNQRASGVLDNTPAGLLNTQSALPGPWTLPSKNNPWLQY

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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