Metagenome / Metatranscriptome Family F081839

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081839
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	53 residues
Representative Sequence	GAIADRVLAARDRYPREARFYDALRTQAKRVYHVQPGHGLAGPWVSVYRL
Number of Associated Samples	105
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.80 %
% of genes near scaffold ends (potentially truncated)	93.86 %
% of genes from short scaffolds (< 2000 bps)	91.23 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.842 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.930 % of family members)
Environment Ontology (ENVO)	Unclassified (34.211 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.246 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.92% β-sheet: 14.10% Coil/Unstructured: 58.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF02274	ADI	22.81
PF00365	PFK	10.53
PF13673	Acetyltransf_10	2.63
PF00583	Acetyltransf_1	2.63
PF01135	PCMT	1.75
PF12847	Methyltransf_18	0.88
PF05553	DUF761	0.88
PF02617	ClpS	0.88
PF13646	HEAT_2	0.88
PF02653	BPD_transp_2	0.88
PF13578	Methyltransf_24	0.88
PF00528	BPD_transp_1	0.88
PF07885	Ion_trans_2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	22.81
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	22.81
COG4874	Uncharacterized conserved protein	Function unknown [S]	22.81
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	10.53
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.75
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	1.75
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	1.75
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.75
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.84 %
Unclassified	root	N/A	13.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.84 %
Unclassified	root	N/A	13.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.84 %
Unclassified	root	N/A	13.16 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	63.16 %
Unclassified	root	N/A	13.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52.63 %
Unclassified	root	N/A	13.16 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	46.49 %
Unclassified	root	N/A	13.16 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	45.61 %
Unclassified	root	N/A	13.16 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.61 %
Unclassified	root	N/A	13.16 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1203389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
2170459005\|F1BAP7Q01BZSYD	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300000550\|F24TB_11261854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300000956\|JGI10216J12902_105170357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300000956\|JGI10216J12902_111105450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300001535\|A3PFW1_10814810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300004081\|Ga0063454_100090001	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300004114\|Ga0062593_102257233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300004480\|Ga0062592_100487847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1013	Open in IMG/M
3300005176\|Ga0066679_10390579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	911	Open in IMG/M
3300005181\|Ga0066678_10640086	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300005330\|Ga0070690_100026405	All Organisms → cellular organisms → Bacteria	3582	Open in IMG/M
3300005335\|Ga0070666_11489130	Not Available	506	Open in IMG/M
3300005343\|Ga0070687_101245177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300005434\|Ga0070709_10054923	All Organisms → cellular organisms → Bacteria	2513	Open in IMG/M
3300005438\|Ga0070701_10066830	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300005444\|Ga0070694_100852502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	750	Open in IMG/M
3300005457\|Ga0070662_101634292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300005467\|Ga0070706_101646910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300005468\|Ga0070707_101711183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300005471\|Ga0070698_100990901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300005544\|Ga0070686_101101912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300005546\|Ga0070696_100268063	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300005547\|Ga0070693_100856859	All Organisms → cellular organisms → Bacteria → Terrabacteria group	678	Open in IMG/M
3300005575\|Ga0066702_10211150	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300005719\|Ga0068861_100662263	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300006046\|Ga0066652_101127385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	743	Open in IMG/M
3300006163\|Ga0070715_10079636	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300006574\|Ga0074056_11771127	All Organisms → cellular organisms → Bacteria → Terrabacteria group	885	Open in IMG/M
3300006575\|Ga0074053_10021619	All Organisms → cellular organisms → Bacteria	2563	Open in IMG/M
3300006796\|Ga0066665_10270212	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300006800\|Ga0066660_11435293	Not Available	542	Open in IMG/M
3300006845\|Ga0075421_101102096	Not Available	892	Open in IMG/M
3300006904\|Ga0075424_100499597	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300006904\|Ga0075424_101365680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300009098\|Ga0105245_11670223	Not Available	689	Open in IMG/M
3300009098\|Ga0105245_12096520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300009101\|Ga0105247_11076486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300009137\|Ga0066709_104172887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300009545\|Ga0105237_12036244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300010037\|Ga0126304_10745098	Not Available	663	Open in IMG/M
3300010042\|Ga0126314_11531830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300010044\|Ga0126310_11417510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300010329\|Ga0134111_10292962	Not Available	676	Open in IMG/M
3300011119\|Ga0105246_11334067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666	Open in IMG/M
3300011119\|Ga0105246_12358676	Not Available	521	Open in IMG/M
3300012010\|Ga0120118_1136974	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300012091\|Ga0136625_1332777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300012208\|Ga0137376_11267566	Not Available	627	Open in IMG/M
3300012210\|Ga0137378_11479923	All Organisms → cellular organisms → Bacteria → Terrabacteria group	591	Open in IMG/M
3300012354\|Ga0137366_10192988	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300012356\|Ga0137371_10625741	All Organisms → cellular organisms → Bacteria → Terrabacteria group	826	Open in IMG/M
3300012532\|Ga0137373_10123361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2225	Open in IMG/M
3300012955\|Ga0164298_10149500	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300012958\|Ga0164299_11133591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300012960\|Ga0164301_10702452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300012961\|Ga0164302_11222552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300012984\|Ga0164309_10870340	All Organisms → cellular organisms → Bacteria → Terrabacteria group	732	Open in IMG/M
3300012985\|Ga0164308_12130070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300012987\|Ga0164307_10259440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1218	Open in IMG/M
3300013307\|Ga0157372_11229658	All Organisms → cellular organisms → Bacteria → Terrabacteria group	865	Open in IMG/M
3300013308\|Ga0157375_11016912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	968	Open in IMG/M
3300013308\|Ga0157375_12950356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300013501\|Ga0120154_1091614	Not Available	698	Open in IMG/M
3300013758\|Ga0120147_1094911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300014325\|Ga0163163_10231727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1896	Open in IMG/M
3300014745\|Ga0157377_11510127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300014965\|Ga0120193_10085044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300015372\|Ga0132256_100673653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1150	Open in IMG/M
3300015374\|Ga0132255_104518510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300018027\|Ga0184605_10002317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6379	Open in IMG/M
3300018028\|Ga0184608_10080791	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300018032\|Ga0187788_10133730	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300018071\|Ga0184618_10139358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	984	Open in IMG/M
3300018071\|Ga0184618_10158037	All Organisms → cellular organisms → Bacteria → Terrabacteria group	930	Open in IMG/M
3300018431\|Ga0066655_10223199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1183	Open in IMG/M
3300018468\|Ga0066662_10053235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2596	Open in IMG/M
3300019879\|Ga0193723_1107419	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300020005\|Ga0193697_1046640	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1080	Open in IMG/M
3300020006\|Ga0193735_1131266	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300021418\|Ga0193695_1111929	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300023066\|Ga0247793_1071709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579	Open in IMG/M
3300025916\|Ga0207663_10057220	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2456	Open in IMG/M
3300025916\|Ga0207663_10889518	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	712	Open in IMG/M
3300025918\|Ga0207662_11049089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579	Open in IMG/M
3300025922\|Ga0207646_11931068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300025926\|Ga0207659_10655031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	898	Open in IMG/M
3300025927\|Ga0207687_11615612	Not Available	556	Open in IMG/M
3300025972\|Ga0207668_10190497	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300026118\|Ga0207675_100686271	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300026142\|Ga0207698_11683894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	650	Open in IMG/M
3300026332\|Ga0209803_1242356	Not Available	625	Open in IMG/M
3300028592\|Ga0247822_10610397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	874	Open in IMG/M
3300028707\|Ga0307291_1203652	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300028709\|Ga0307279_10053964	Not Available	663	Open in IMG/M
3300028718\|Ga0307307_10082399	All Organisms → cellular organisms → Bacteria → Terrabacteria group	968	Open in IMG/M
3300028771\|Ga0307320_10375951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300028784\|Ga0307282_10666573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300028787\|Ga0307323_10181055	All Organisms → cellular organisms → Bacteria → Terrabacteria group	761	Open in IMG/M
3300028796\|Ga0307287_10079275	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300028799\|Ga0307284_10028935	All Organisms → cellular organisms → Bacteria	1840	Open in IMG/M
3300028802\|Ga0307503_10575696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300028811\|Ga0307292_10310968	All Organisms → cellular organisms → Bacteria → Terrabacteria group	661	Open in IMG/M
3300028811\|Ga0307292_10429216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300028875\|Ga0307289_10462759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300030336\|Ga0247826_11380990	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031548\|Ga0307408_100783850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	864	Open in IMG/M
3300031903\|Ga0307407_10516236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	878	Open in IMG/M
3300031995\|Ga0307409_100343732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1405	Open in IMG/M
3300032002\|Ga0307416_100257625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1703	Open in IMG/M
3300032009\|Ga0318563_10707178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.44%
Host-Associated	Host-Associated	24.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.05%
Plants	Host-Associated → Plants	24.56%
Aquatic	Environmental → Aquatic	4.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.18%
Sediment	Environmental → Aquatic → Sediment	3.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.51%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Roots	Host-Associated → Plants → Roots	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.39%
Loam	Environmental → Terrestrial → Soil → Loam	15.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.51%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.63%
Ice	Environmental → Aquatic → Freshwater → Ice	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.51%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.63%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.51%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.51%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.51%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.75%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.88%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012091	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013758	Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_05066820	2124908045	Soil	TGAVADRVLAARDRYPREARFYDQLRTQARAVYHLEPGHGLTGPWVSLYRL
E41_11006470	2170459005	Grass Soil	FVTGAVADRVLAARDHYPQEARFYDDLRTRAKRVYHVQSGHGLTGPWVSLYRL
F24TB_112618541	3300000550	Soil	RREGIDYVLVSGAVADRVLAARDRYPREARFYDQLRTQARAVYHLEPGRGLTGPWVSLYRL*
JGI10216J12902_1051703572	3300000956	Soil	VRYALVTGAIADRVLAARDRYPREARFYDQLRAQAKRVYHVEPGHGLTGPWVSLYRL*
JGI10216J12902_1111054502	3300000956	Soil	EQGVRYVVVTGAVTDRVLAARDHYPREARFYDELAANATRSYYVQPGGDLAGPWVAVYRLQ*
A3PFW1_108148102	3300001535	Permafrost	VLAARDRYPREARFYDALRAQAKRVYHVEPGHGLAGPWVSVYRL*
Ga0063454_1000900011	3300004081	Soil	AARDRYPREARFYDDLERRARRVYYLEPGGDLAGPWVAVYRLRA*
Ga0062593_1022572332	3300004114	Soil	VTGAVADRVLAARDHYPQEARFYDDLRTQANRVYHVQAGHGLTGPWVSLYRL*
Ga0062592_1004878473	3300004480	Soil	VRYALVTGAIADRVLAVRDRYPREAHFYDQLRTRGKRVYHVESGHGLTGPWVSLYRL*
Ga0066679_103905793	3300005176	Soil	AARSNYPREARFYDDLRAQGKRLYYLAPGDGRAGPWVAVYRI*
Ga0066678_106400862	3300005181	Soil	IHDVVVTGAVTDRVLAARDRYPREAAFYDDLRAKARRVFYLQAGGDLAGPWVAVYRL*
Ga0070690_1000264051	3300005330	Switchgrass Rhizosphere	DVVVTGAVTDRVLAARDRYPREARFYDELERRAERVYYVQPGGDLAGPWVAVYRLRA*
Ga0070666_114891301	3300005335	Switchgrass Rhizosphere	LRSKGVDYVLVTGAVEDRVLAARDHYPQEAHFYDDLRTRANRVYHVQSGHGLTGPWVSLYRL*
Ga0070687_1012451772	3300005343	Switchgrass Rhizosphere	AVTDRVLAARDRYPREAAFYDRLRTNSRRVFYLTPGGEFAGPWVAVYRL*
Ga0070709_100549231	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AVTDRVLAARDRYPREARFYDDLERRAERVYYVQPGGDLAGPWVAVYRLRA*
Ga0070701_100668301	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	RVLAARDRYPREARFYDDLERRAERVYYVQPGGDLAGPWVAVYRLRA*
Ga0070694_1008525022	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VFVTGAVADRVLAARDRYPREARFYDKLRMQGKRVYHVRAGHGLTGPWVSVYRL*
Ga0070662_1016342921	3300005457	Corn Rhizosphere	ARLRAQGVHYALVTGAIADRVLAARDTYPKEAHFYDELRTRAKRVYHVKAGHGLTGPWVSLYRL*
Ga0070706_1016469102	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	SYVLVTGAIADRVLAARDRYPREARFYDQLRRTRRVYHVQAGHGLTGPWVSVYRL*
Ga0070707_1017111832	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RDRYPREARFYDDVRLQAKRVYHVQPGHGLAGPWVSVYRL*
Ga0070698_1009909012	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GVHDVVVTGAITDRVLAARDRYPREAAFYDDLRTKARRVFFLGPGGDLAGPWVAVYRL*
Ga0070686_1011019122	3300005544	Switchgrass Rhizosphere	VTGAVADRVLAARDRYPREARFYDKLRMQGKRVYHVQAGHGLTGPWVSVYRL*
Ga0070696_1002680633	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VVVTGAVTDRVLAARDRYPREARFYDELERRAERVYYVQPGGDLAGPWVAVYRLRA*
Ga0070693_1008568591	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	ARDRYPREARFYDELERRAERVYYVQPGGDLAGPWVAVYRLRA*
Ga0066702_102111501	3300005575	Soil	ADRVRAAADRYPREVRFYDDLRRRGRLLYRIDAGAGRAGPWVAVYRL*
Ga0068861_1006622633	3300005719	Switchgrass Rhizosphere	YALVTGAIADRVLAARDSYPKEAHFYDELRTRAKRVYHVEAGHGLTGPWVSLYRL*
Ga0066652_1011273852	3300006046	Soil	LRAEGVRYALVTGAIADRVLAARDRYPKEAHFYDQLRTRAKRVYHVEPGHGLTGPWVSLYRL*
Ga0070715_100796361	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GAVTDRVLAARDRYPREARFYDDLERRAQRVYYVEPGGDLAGPWVAVYRLRA*
Ga0074056_117711272	3300006574	Soil	VLAARDRYPREARFYDDLERRAQRVYYVEPGGGLAGPWVAVYRLRA*
Ga0074053_100216195	3300006575	Soil	VTGAVTDRVLAARDRYPREARFYDDLERRAQRVYYVEPGGDLAGPWVAVYRLPA*
Ga0066665_102702123	3300006796	Soil	IEDVVVTGAITDRVLAARDRYPREASFYDDLRAQARRVFYLTPGAGLAGPWVAVYRLRA*
Ga0066660_114352932	3300006800	Soil	RVLAARDRYPREASFYDNLRRRARRVFYVTPGAGLAGPWVAVYRLRT*
Ga0075421_1011020961	3300006845	Populus Rhizosphere	YALVTGAIEDRVLAARDHYPREARFYDQLRAREKRLYYVSAGHGLSGPWVALYRI*
Ga0075424_1004995971	3300006904	Populus Rhizosphere	RLRREGIRYALVTGAIEDRVLAARDHYPREARFYDQLRAREKRLYYVSAGHGLSGPWVALYRI*
Ga0075424_1013656802	3300006904	Populus Rhizosphere	VTGAVADRVLAARDRYPREARFYDQLRMQGKRVYHVRAGHGLTGPWVSVYRL*
Ga0105245_116702231	3300009098	Miscanthus Rhizosphere	DRVLAARDHYPREARFYDQLRTREKRLYYVSAGHGLSGPWVALYQI*
Ga0105245_120965201	3300009098	Miscanthus Rhizosphere	KGVNYVLVTGAVADRVLAARDHYPQEARFYDDLRTRAKRVYHVQSGHGLTGPWVSLYRL*
Ga0105247_110764861	3300009101	Switchgrass Rhizosphere	TGAVADRVLAARDRYPREARFYDQLRMQGKRVYHVRAGHGLTGPWVSVYRL*
Ga0066709_1041728872	3300009137	Grasslands Soil	GIHVVVVTGAVTDRVLAARSEYPREARFYEDLRAQARRLYYVEPGGDRAGPWVAVYRI*
Ga0105237_120362441	3300009545	Corn Rhizosphere	IDDRVLAARDRYPREARFYDQLRRTRRVYHVQAGHGLTGPWVSVYRL*
Ga0126304_107450981	3300010037	Serpentine Soil	TDRVLAAQSSYPRETRFYDDLRQRAKRVYHLEPGGDLAGPWVAVYEL*
Ga0126314_115318302	3300010042	Serpentine Soil	GAVTDRVLAARSDYPREAQFYDDLRRTARRAFYLWPGNDRAGPWVAVYRL*
Ga0126310_114175102	3300010044	Serpentine Soil	TDRVLAARGDYPREARFYDDLRMKAKRAFYLEPGDGRAGPWVAVYRL*
Ga0134111_102929622	3300010329	Grasslands Soil	AVTDRVLAARDRYPREAAFYDDLRGKARRVFYLRPGGDLAGPWVAVYRLAA*
Ga0105246_113340672	3300011119	Miscanthus Rhizosphere	DRVLAARDRYPREAAFYDRLRTNSRRVFYLTPGGEFAGPWVAVYRL*
Ga0105246_123586762	3300011119	Miscanthus Rhizosphere	RAEGVSYVLVTGAIADRVLAARDRYPREARFYDQLRRTRRVYHVQAGHGLTGPWVSVYRL
Ga0120118_11369741	3300012010	Permafrost	GVDYALVTGVIADRVLAARDRYPREARFYDALRTQAKRVYHVEPGHGLAGPWVSVYRL*
Ga0136625_13327772	3300012091	Polar Desert Sand	LAARDRYPREARFYADLRTRARRLYYVSSGKGLAGPWVALYRL*
Ga0137376_112675662	3300012208	Vadose Zone Soil	LAARDRYPREAAFYDDLRTKARRVFYLQAGGDLAGPWVAVYRF*
Ga0137378_114799231	3300012210	Vadose Zone Soil	AVTDRVLAARDRYPREAAFSDDLRKKARRVFYLRPGGDLAGPWVAVYRL*
Ga0137366_101929883	3300012354	Vadose Zone Soil	VLAARDRYPREAAFYDDLRTKARRVFYLQAGGDLAGPWVAVYRL*
Ga0137371_106257411	3300012356	Vadose Zone Soil	VVVTGVVTDRVLAARERYPREAAFYDDLRTKARRVFYVTPGGDLAGPWVAVYRLGA*
Ga0137373_101233614	3300012532	Vadose Zone Soil	LGIHVVVVTGAVTDRVLAARSDYPREASFYDDLRTKARRAFYLEPGGDLAGPWVAVYRL*
Ga0164298_101495001	3300012955	Soil	TDRVLAARDRYPREARFYDELQSRAQRVYYVQPGGDLAGPWVAVYRLRA*
Ga0164299_111335911	3300012958	Soil	PNRNLATLRSKGVGYVLVTGAIADRVLAARDHYPQEASFYDDLRTRAKRVYHVQSGHGLTGPWVSLYRL*
Ga0164301_107024522	3300012960	Soil	GRLRAEGVRYVLVTGAVADRVLAARDRYPREARFYDQLRMQGKRVYHVRAGHGLTGPWVSVYRL*
Ga0164302_112225521	3300012961	Soil	RDRYPREARFYDDLRARTKRIYYVSPGDGLAGPWVAIYRL*
Ga0164309_108703401	3300012984	Soil	AVTDRVLAARDRYPREARFYDDLEKRAQRVYYVEPGGDLAGPWVAVYRLRS*
Ga0164308_121300701	3300012985	Soil	LVTGAIADRVLAARDRYPKEARFYDELRTRARRVYHVEAGHGLTGPWVSLYRL*
Ga0164307_101425731	3300012987	Soil	TGAVADRVRAAAKHYPREVRFYDQLQRQAKRLYYVKPANGLAGPWVAVYRL*
Ga0164307_102594403	3300012987	Soil	VTGAVADRVLAARDRYPREARFYDRLRMQEKRVYHVRAGHGLTGPWVSVYRL*
Ga0157372_112296581	3300013307	Corn Rhizosphere	RKIGVSDVVVTGAVTDRVLAARDRYPREARFYAELERRAERVYYVQPGGDLAGPWVAVYRLRA*
Ga0157375_110169121	3300013308	Miscanthus Rhizosphere	GVSFVLVTGAIADRVLAARDRYPREARFYDQLRRTRRVYHVQAGHGLTGPSVSVYRL*
Ga0157375_129503561	3300013308	Miscanthus Rhizosphere	GAIADRVLAARDSYPKEAHFYDELRTRAKRVYHVEAGHGLTGPWVSLYRL*
Ga0120154_10916141	3300013501	Permafrost	RDVVVTGAVTDRVLAARDRYPKEAAFYDDLRTKARRVFYLQPGGQLAGPWVAVYRL*
Ga0120147_10949111	3300013758	Permafrost	VLAARDRYPREARFYDALRTQAKRVYHVEPGNGLAGHWVSVYRL*
Ga0134075_105372311	3300014154	Grasslands Soil	GVRVVVATGAVADRVRAAADRYPREVRFYDDLRRRGRLLYRIDAGAGRAGPWVAVYRL*
Ga0163163_102317271	3300014325	Switchgrass Rhizosphere	RAEGVRYVFVTGAVADRVLAARDRYPREARFYDRLRMQEKRVYHVRAGHGLTGPWVSVYRL*
Ga0157377_115101271	3300014745	Miscanthus Rhizosphere	VLAARDHYPREARFYDQLRTREKRLYYVSAGHGLSGPWVALYQI*
Ga0120193_100850441	3300014965	Terrestrial	VLAARSEYPREARFYDDLRQQARLVKHFDAGDGRGGPWVAVYRLRAEAPPR
Ga0132256_1006736531	3300015372	Arabidopsis Rhizosphere	AVADRVLAARDRYPREARFYDDLRARTKRIYYVAPGDGRAGPWVAIYRL*
Ga0132255_1045185102	3300015374	Arabidopsis Rhizosphere	VVTGAVTDRVLAARSDYPREARFYDDLRQQGRRAFYLQPGDDRAGPWVAVYRL*
Ga0184605_100023171	3300018027	Groundwater Sediment	VTGAVTDRVLAARDRYPREAAFYDDLHTKARRVFYLAPGRGLAGPWVAVYRLGA
Ga0184608_100807913	3300018028	Groundwater Sediment	LGSRDVVVTGAVTDRVLAARDRYPREAAFYDDLHTKARRVFYLAPGRGLAGPWVAVYRLG
Ga0187788_101337303	3300018032	Tropical Peatland	VTGAVADRVLAARSSYPREARFYDRLRTQARTVYHLEPTHGLTGPWVTLYRL
Ga0184618_101393581	3300018071	Groundwater Sediment	VTDRVLAARSDYPREARFYDDLRTKARRAFYLAPGGDRAGPWVAVYRL
Ga0184618_101580372	3300018071	Groundwater Sediment	AARDHYPREARFYDDLRSRAKRVYYLEPGDSLAGPWVAVYRLAT
Ga0066655_102231993	3300018431	Grasslands Soil	VRVVVATGAVADRVRAAADRYPREVRFYDDLRRRGRLLYRVDAGAGRAGPWVAVYRL
Ga0066662_100532354	3300018468	Grasslands Soil	VATGAVADRVRAAADRYPREVRFYDDLRRRGRLLYRIDAGAGRAGPWVAVYRL
Ga0193723_11074191	3300019879	Soil	VLAARDHYPREARFYDDLRSRTKRVYYLEPGGDLAGPWVAVYRLRA
Ga0193697_10466402	3300020005	Soil	TDRVLAARDRYPREARFYDDLESRAQRVYYVEPGGDLAGPWVAVYRLRA
Ga0193735_11312662	3300020006	Soil	TDRVLAARDRYPREARFYDELERRAQRVYYVEPGGDLAGPWVAVYRLRA
Ga0193695_11119291	3300021418	Soil	AVTDRVLAARDRYPREAAFYDDLRAKARRVFYLQAGGDLAGPWVAVYRL
Ga0247793_10717092	3300023066	Soil	GRLRAEGVRYVLVTGAVADRVLAARDRYPREARFYDQLRMQGKRVYHVRAGHGLTGPWVSVYRL
Ga0207663_100572205	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DRVLAARDRYPREARFYDELERRAERVYYVQPGGDLAGPWVAVYRLRA
Ga0207663_108895183	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VLVTGAVEDRVLAARDRYPREARFDDQLRKQAKRIYELRAGGALTGPWVAVYRL
Ga0207662_110490892	3300025918	Switchgrass Rhizosphere	LGIRDVVVTGAVTDRVLAARDRYPREAAFYDRLRTNSRRVFYLTPGGEFAGPWVAVYRL
Ga0207646_119310682	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VLAARDRYPREARFYDDVRLQAKRVYHVQPGHGLAGPWVSVYRL
Ga0207659_106550312	3300025926	Miscanthus Rhizosphere	RDVARLRADGVRYVFVTGAVADRVLAARDRYPREARFYDKLRMQGKRVYHVQAGHGLTGPWVSVYRL
Ga0207687_116156121	3300025927	Miscanthus Rhizosphere	ARLRRGGVRYALVTGAVADRVLAARDHYPREARFYDQLRTREKRLYYVSAGHGLSGPWVALYQI
Ga0207668_101904971	3300025972	Switchgrass Rhizosphere	AVTDLVLAARDRYPREARFYDELERRAERVYYVQPGGDLAGPWVAVYRLRA
Ga0207675_1006862711	3300026118	Switchgrass Rhizosphere	VTGAIADRVLAARDSYPKEAHFYDELRTRAKRVYHVEAGHGLTGPWVSLYRL
Ga0207698_116838942	3300026142	Corn Rhizosphere	VLVTGAIADRVLAARDRYPREARFYDQLRRTRRVYHVQAGHGLTGPWVSVYRL
Ga0209803_12423561	3300026332	Soil	TDRVLDARSDYPREARFYDQLGARAKRIYYLQPGDDRAGPWVAVYRLPT
Ga0247822_106103971	3300028592	Soil	VTGTIADRVLLARDRYPREARFYDELRTRVKRVYHVEAGHGLTGPWVSVYRL
Ga0307291_12036522	3300028707	Soil	AVTDRVLAARDHYPREARFYDDLRTHTKRVYYLEPGQDLAGPWVAVYRLGA
Ga0307279_100539642	3300028709	Soil	RDVVVTGAVTDRVLAARDRYPRESRFYDDLRARAKRVYYVRPGGKLAGPWVAVYRLRT
Ga0307307_100823992	3300028718	Soil	GAVTDRVLAARDHYPREARFYDDLRSRAKRVYYLEPGDSLAGPWVAVYRLAT
Ga0307320_103759512	3300028771	Soil	EGVGYALVTGAVADRVLAARDRYPREARFYDALRTQAKRVYHVEPGHGLAGPWVSVYRL
Ga0307282_106665731	3300028784	Soil	GAIADRVLAARDRYPREARFYDALRTQAKRVYHVQPGHGLAGPWVSVYRL
Ga0307323_101810551	3300028787	Soil	RVLAARDHYPREARFYDDLRSRAKRVYYLEPGDSLAGPWVAVYRLAT
Ga0307287_100792753	3300028796	Soil	LRKIGVRDVVVTGAVTDRVLAARDRYPREARFYDELERRAQRVYYVEPGGDLAGPWVAVYRLRA
Ga0307284_100289353	3300028799	Soil	RLGIHDVVVTGAVTDRVLAARDRYPREAAFYDDLRTKARRVFYLQAGGDLAGPWVAVYRL
Ga0307503_105756962	3300028802	Soil	ADRVLAARDRYPREARFYDQLRRTRRVYHVQAGHGLTGPWVSVYRL
Ga0307292_103109682	3300028811	Soil	VVTGAVTDRVLAARDHYPREARFYDDLRSRAKRVYYLEPGDSLAGPWVAVYRLAT
Ga0307292_104292161	3300028811	Soil	LRRLGIRNVMVTGAVTDRVLAARDRYPREAAFYDELRAKARRVLYVRPGGNLAGPWVAVYRL
Ga0307310_100009921	3300028824	Soil	ARDRYPREAAFYDDLHTKARRVFYLAPGRGLAGPWVAVYRLGA
Ga0307289_104627592	3300028875	Soil	SGAVVDRVLAARDRYPREVRFYDQLRMQGKRVYHVRAGHGLTGPWVSVYRL
Ga0247826_113809902	3300030336	Soil	EGVDYVLVTGAVADRVLAARSRYPREARFYDQLSTRARAVYHLDPAHGLTGPWVTLYRL
Ga0307408_1007838502	3300031548	Rhizosphere	LAARDRYPRDASFYDDLRADTRRVFYVEGGDGLAGPWVALYRL
Ga0307407_105162361	3300031903	Rhizosphere	VTGAVADRVLAARDRYPRDASFYDDLRADTRRVFYLEGGDGLAGPWVALYRL
Ga0307409_1003437321	3300031995	Rhizosphere	LGAGYVVVTGAVADRVLAARERYPAEARFYTELEASAARVFRADPGGDLAGPWVAVYRL
Ga0307416_1002576251	3300032002	Rhizosphere	ADRVLAARDRYPRDARFYDDLRANAKRVLYVVPGDGLTGPWVALYRL
Ga0318563_107071781	3300032009	Soil	VEDRVLAARDHYPREARFDDQLRTRAKRIYELRAGGDLTGPWVAVYRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081839

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences