Metagenome Family F081814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081814
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	54 residues
Representative Sequence	VSGSDAAMKLLDVVRATLRTTFRPRFELRVPRFFFDLRFVAAKVAADYADLH
Number of Associated Samples	98
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.57 %
% of genes near scaffold ends (potentially truncated)	58.77 %
% of genes from short scaffolds (< 2000 bps)	82.46 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.105 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.035 % of family members)
Environment Ontology (ENVO)	Unclassified (32.456 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.351 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.25% β-sheet: 0.00% Coil/Unstructured: 38.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF09285	Elong-fact-P_C	35.96
PF13398	Peptidase_M50B	25.44
PF00571	CBS	2.63
PF01380	SIS	1.75
PF00196	GerE	0.88
PF00903	Glyoxalase	0.88
PF00128	Alpha-amylase	0.88
PF05746	DALR_1	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.88
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.88
COG0751	Glycyl-tRNA synthetase, beta subunit	Translation, ribosomal structure and biogenesis [J]	0.88
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.88
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.11 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.11 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.11 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	50.88 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	50.88 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	26.32 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	17.54 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	15.79 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	15.79 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	13.16 %
Unclassified	root	N/A	7.89 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	2.63 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	11.40 %
Unclassified	root	N/A	7.89 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2.63 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17046247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3593	Open in IMG/M
2088090014\|GPIPI_17160569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1076	Open in IMG/M
2170459005\|F1BAP7Q02GC62U	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300000890\|JGI11643J12802_12093781	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300004114\|Ga0062593_103489187	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300004157\|Ga0062590_102840733	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300004281\|Ga0066397_10074459	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300004463\|Ga0063356_101247739	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300004479\|Ga0062595_100739672	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005180\|Ga0066685_10972264	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300005290\|Ga0065712_10009296	All Organisms → cellular organisms → Bacteria	2410	Open in IMG/M
3300005293\|Ga0065715_10861454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	587	Open in IMG/M
3300005331\|Ga0070670_101435929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300005332\|Ga0066388_100449373	All Organisms → cellular organisms → Bacteria	1930	Open in IMG/M
3300005332\|Ga0066388_103465409	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005332\|Ga0066388_103741328	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005353\|Ga0070669_101333880	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005365\|Ga0070688_100865397	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300005366\|Ga0070659_100559693	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300005367\|Ga0070667_101705422	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005435\|Ga0070714_100949358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	836	Open in IMG/M
3300005439\|Ga0070711_100326356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1228	Open in IMG/M
3300005554\|Ga0066661_10052592	All Organisms → cellular organisms → Bacteria	2336	Open in IMG/M
3300005559\|Ga0066700_11058740	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300005564\|Ga0070664_100351896	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300005764\|Ga0066903_107786069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	551	Open in IMG/M
3300006032\|Ga0066696_10698630	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300006163\|Ga0070715_10439502	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300006844\|Ga0075428_101360597	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300006904\|Ga0075424_100283686	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1762	Open in IMG/M
3300006904\|Ga0075424_102561803	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300009137\|Ga0066709_100042532	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5013	Open in IMG/M
3300010038\|Ga0126315_10622816	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300010038\|Ga0126315_11096271	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	537	Open in IMG/M
3300010301\|Ga0134070_10349045	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300010364\|Ga0134066_10230602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	630	Open in IMG/M
3300010373\|Ga0134128_10770535	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300010375\|Ga0105239_10080866	All Organisms → cellular organisms → Bacteria	3575	Open in IMG/M
3300010375\|Ga0105239_10713650	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300010375\|Ga0105239_13105938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300010376\|Ga0126381_102336028	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300010376\|Ga0126381_104203635	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300010396\|Ga0134126_11980145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	637	Open in IMG/M
3300010397\|Ga0134124_11810831	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300011000\|Ga0138513_100016766	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300011119\|Ga0105246_10897621	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300012096\|Ga0137389_11301613	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300012202\|Ga0137363_10750868	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	827	Open in IMG/M
3300012361\|Ga0137360_10129463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1974	Open in IMG/M
3300012361\|Ga0137360_10708006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	865	Open in IMG/M
3300012917\|Ga0137395_10079783	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2133	Open in IMG/M
3300012922\|Ga0137394_10305319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1360	Open in IMG/M
3300012941\|Ga0162652_100009736	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1168	Open in IMG/M
3300012948\|Ga0126375_10527867	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300012957\|Ga0164303_10155776	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1215	Open in IMG/M
3300012960\|Ga0164301_10291454	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300012987\|Ga0164307_10699299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	794	Open in IMG/M
3300012987\|Ga0164307_11870807	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300012989\|Ga0164305_11778534	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	556	Open in IMG/M
3300013296\|Ga0157374_11131950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	803	Open in IMG/M
3300015264\|Ga0137403_10579295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	988	Open in IMG/M
3300015372\|Ga0132256_102671925	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	599	Open in IMG/M
3300015374\|Ga0132255_100483281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1817	Open in IMG/M
3300015374\|Ga0132255_102335060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	816	Open in IMG/M
3300016270\|Ga0182036_11368302	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300016319\|Ga0182033_11509058	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300016341\|Ga0182035_11827314	Not Available	550	Open in IMG/M
3300018054\|Ga0184621_10033692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1650	Open in IMG/M
3300018078\|Ga0184612_10445948	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300018081\|Ga0184625_10596998	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300019362\|Ga0173479_10087120	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300019789\|Ga0137408_1034477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3879	Open in IMG/M
3300019866\|Ga0193756_1021793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	892	Open in IMG/M
3300019872\|Ga0193754_1012584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	889	Open in IMG/M
3300019882\|Ga0193713_1204432	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300019885\|Ga0193747_1051114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1027	Open in IMG/M
3300019886\|Ga0193727_1003241	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6789	Open in IMG/M
3300020002\|Ga0193730_1183186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300020580\|Ga0210403_10009753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	7849	Open in IMG/M
3300021510\|Ga0222621_1096209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	628	Open in IMG/M
3300025925\|Ga0207650_10892311	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	755	Open in IMG/M
3300025930\|Ga0207701_10420873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1149	Open in IMG/M
3300025932\|Ga0207690_10440777	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1045	Open in IMG/M
3300025938\|Ga0207704_10516155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	966	Open in IMG/M
3300025944\|Ga0207661_12065280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300025949\|Ga0207667_10834187	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	917	Open in IMG/M
3300026142\|Ga0207698_10548683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1132	Open in IMG/M
3300026326\|Ga0209801_1024690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2907	Open in IMG/M
3300027821\|Ga0209811_10304190	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300027907\|Ga0207428_10506697	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	876	Open in IMG/M
3300028379\|Ga0268266_10099688	All Organisms → cellular organisms → Bacteria	2557	Open in IMG/M
3300028380\|Ga0268265_12551611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300028711\|Ga0307293_10174968	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	683	Open in IMG/M
3300028878\|Ga0307278_10111659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1229	Open in IMG/M
3300031474\|Ga0170818_106562351	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300031720\|Ga0307469_10176126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1638	Open in IMG/M
3300031820\|Ga0307473_10226681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1129	Open in IMG/M
3300031833\|Ga0310917_10103449	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1836	Open in IMG/M
3300031858\|Ga0310892_10247273	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300031941\|Ga0310912_11099041	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300032035\|Ga0310911_10569011	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300032180\|Ga0307471_100860761	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300032180\|Ga0307471_101584025	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300032261\|Ga0306920_100024564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	8487	Open in IMG/M
3300033412\|Ga0310810_11008955	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	710	Open in IMG/M
3300033412\|Ga0310810_11261705	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.44%
Host-Associated	Host-Associated	24.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.93%
Plants	Host-Associated → Plants	24.56%
Aquatic	Environmental → Aquatic	3.51%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.89%
Sediment	Environmental → Aquatic → Sediment	3.51%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.53%
Loam	Environmental → Terrestrial → Soil → Loam	9.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.51%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.16%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.39%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.51%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.63%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00521760	2088090014	Soil	MKFLDLARATLRTIFRPRFELRAPRFFFDLRFDAAKLAADYAELVAEKQD
GPIPI_00883290	2088090014	Soil	MNFTHFVGTVSGSGAATKFLDVARATLRTTFGPRFELRVWRLFFNLRFVAKSSADYADLR
E41_08879240	2170459005	Grass Soil	MKLLDVVRATLRTTFRPRFELRVPRFFFDLRFVAKSSADYADLRRFKQ
JGI11643J12802_120937812	3300000890	Soil	LDVARATLRTTFRPRFELRVSRFFFDLRFVAKSSADYADAVVSE
Ga0062593_1034891872	3300004114	Soil	GTVSGSDSATNLLGVMRATLRMTFPPRLELRAPRLFFFDVRFVAKSSADYADLHEPMQD*
Ga0062590_1028407332	3300004157	Soil	VSGSDAAMKLLDVVRATLWTTLRPRFELRVSRLFFDLRFVAKSSADYADLRR*
Ga0066397_100744591	3300004281	Tropical Forest Soil	AKINFTHFVGTVSGSDSATKFLDVVRATLRTTFRPRFELRISRLFFDLCFVAKSSADYADLRR*
Ga0063356_1012477391	3300004463	Arabidopsis Thaliana Rhizosphere	VNGSDAAVKLLDVARATLRTTFRSRFELRVPRFFFLDLRFVAKSSADYA
Ga0062595_1007396722	3300004479	Soil	SDSAMKFLDVVRATLRTIFRSRLELRAPRFLFDLRFVAKSSADYADLRK*
Ga0066679_103057381	3300005176	Soil	KINFTQRVGTVSSSDAGTKVLDLARATLRTTFRPRFELRVMRFFFDLRFVAAKVAADYADLRRRKQDRTGESHE*
Ga0066685_109722642	3300005180	Soil	VSGSDAAMKLLGVARAKLRTTFRPRFELRVPRFFFDLRFVAAKVAADYAD
Ga0065712_100092962	3300005290	Miscanthus Rhizosphere	MNFTHFVGTVSGSDAAMKFLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0065715_108614542	3300005293	Miscanthus Rhizosphere	VSGSDAAMKLLDVGPATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0070670_1014359291	3300005331	Switchgrass Rhizosphere	MELLDVARATLRTTFRPRFELRVSRYFFDLRFVAKSSADYADL
Ga0066388_1004493731	3300005332	Tropical Forest Soil	VGTVSGSDAAMKPRGVVRATLRTTFRPRFELRVPRLFFDLRFVAAKVAADYADL
Ga0066388_1034654091	3300005332	Tropical Forest Soil	VSGSDAAVKLLGVARATLRTIFRPRVELRVPRFFFDLRFVAKLSADYADLRR*
Ga0066388_1037413282	3300005332	Tropical Forest Soil	MKFLDLARATLRTIFRPRFELRVPRFFFDLRFDAAKLAADYAELVAEKQD*
Ga0070669_1013338802	3300005353	Switchgrass Rhizosphere	MNFTHFVGTVSGSDAAMKFLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAADYA
Ga0070688_1008653971	3300005365	Switchgrass Rhizosphere	MNFTHFVGTVSGSDAAMKFLDVVRATLRTTFRSRFELRVPRFFFDLRFVAAKVAAD*
Ga0070659_1005596931	3300005366	Corn Rhizosphere	LLDVARATLRTTFRPRFELRVSRFFFDLRFVAKSSADYAELSR*
Ga0070667_1017054222	3300005367	Switchgrass Rhizosphere	GSDSAMKRLDGVRATLRTIFPPRFELRVPQFFFFDVRFVAKSSADYAELHKPMQD*
Ga0070714_1009493581	3300005435	Agricultural Soil	MKFLDLARATLRTIFPPRFELRVPRFFFDLRFDAAKLAADYAELVEQKQD*
Ga0070711_1003263563	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	THFVGTVSGSDSAMKFLDVVRATLRTIFRPRFGLRRPRFLSFDLRFVAKSSADYADLRK*
Ga0070679_1016530522	3300005530	Corn Rhizosphere	AKINFTHFVGTVSGSDCAIKSPDGVRATLRMTFPPRFELRAPPFFFDLRFVTAKLAADYAEFSTQKQD*
Ga0066661_100525923	3300005554	Soil	MKLLGVVRATLRTTFRPRFELRVPRFFFDLRFVAAKVAAD
Ga0066700_106198601	3300005559	Soil	KIATINFTQRVGTVSDSSGATKLLAVPRATLWTTFRPRSDLRFARLLFDLRFVAAKVAADYADLHRQKQGRTAD*
Ga0066700_110587402	3300005559	Soil	VSGSDAAMKLLGVARAKLRTTFRPRFELRVPRFFFDLRFVAAKVAAVYA
Ga0070664_1003518961	3300005564	Corn Rhizosphere	VSGSDAATKFLGELVRAATLRTTFRPRFELRVPPFFFDLRFVAKSSADYA
Ga0066903_1077860692	3300005764	Tropical Forest Soil	MNLLGVVCATLRTTFRPRFELREPRFFFLDLRFVAKSSADYADL
Ga0066696_106986301	3300006032	Soil	VSSSDPGTKVLDLARATLRTTFCPRFELRVLRFFFDLRFVAAKVAADYADLR
Ga0070715_104395022	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLDLARATLRTIFPPRFELRVPRFFFDLRFDAAKLAADYAGLVEQKQD*
Ga0075428_1013605972	3300006844	Populus Rhizosphere	IAKINFTHFVGTVSGSDSATKFLDVVRATLRTTFRPRSGLRVPRFFFLDLRFVAKSSADYADLRR*
Ga0075424_1002836862	3300006904	Populus Rhizosphere	VSGFDAAVKLLDVARATLRTTFWPRLELRLPRFFLDLRFVAKSSADYADLRR*
Ga0075424_1025618031	3300006904	Populus Rhizosphere	MNFTHFVGTVSGSDSAVKLLGVARAKLRTTFRSRFELRLPRFFFDLRFVAAKVAADYAD
Ga0066709_1000425325	3300009137	Grasslands Soil	MATTNFTQRVGTVRASDDAIKLLDLARATLRTTFRSRLELRVVRFFFDLRFVAAKVAADYADLLKRKQD*
Ga0126315_106228162	3300010038	Serpentine Soil	KIAKINFTHFVGTVSGSDAAMKLLGVARAKLRTTFRPRFELRVPRFFFDLPFVAAKVAADYADLDR*
Ga0126315_110962711	3300010038	Serpentine Soil	KLLGVARAIQRTTFRPRFELRVPRFFFELRFVAKPFADYAGLLKQKQDGIAELK*
Ga0134070_103490452	3300010301	Grasslands Soil	VGTVSGSDAAMKLLDVVRATLRTTFRPRCELRVPPFFLLDLRFVPKSTADYAE
Ga0134066_102306022	3300010364	Grasslands Soil	VGTVSGSDAAMKLLDLARAKLRTTFWPRFELRVPRFFFDLRFVAKSSADYAE
Ga0134128_107705353	3300010373	Terrestrial Soil	VSGSDAAMKLLGVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0105239_100808663	3300010375	Corn Rhizosphere	MGTVSGSDSGMELLDVARATLRTTFRPRFELRVSRFFFDLRFVAKSSADYA
Ga0105239_107136502	3300010375	Corn Rhizosphere	MNFTHFVGTVSGSDAAMKLLDEAGTTLRTTFRPRFELRVPRFFFDLRFVAAKVAADYADLRK*
Ga0105239_131059382	3300010375	Corn Rhizosphere	ELLDVARATLRTTFRPRFELRVSRFFFDLRFVAKSSADYAELSR*
Ga0126381_1023360281	3300010376	Tropical Forest Soil	KINFTHFVGTVSGSDAAVKLLGVARATLRTIFRPRVELRVPRFFFDLRFVAKLSADYADLRR*
Ga0126381_1042036351	3300010376	Tropical Forest Soil	VGTLNGSDAALKLLDVVRATLRTTFRRRFELRVPRLFFLDLRFVAKSSADYADLRR*
Ga0134126_119801451	3300010396	Terrestrial Soil	VGTVIGSDSAMKRLDGVRATLRTIFPPRFELRVPQFFFFDVRFVAKSSADYADLHEPMQD
Ga0134124_118108312	3300010397	Terrestrial Soil	MNFTHFVGTVSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0138513_1000167662	3300011000	Soil	MYFLDEAGTTLRTTFPSRLELRVPRFFFDLRFVAAKVAADYADLH*
Ga0105246_108976211	3300011119	Miscanthus Rhizosphere	MNFTHFVGTVSGSDAAMKFLDVVRATLWITFRPRFELRVSRFFFDLRFVAKSSADYADAVVSESRIHLCK
Ga0137389_113016131	3300012096	Vadose Zone Soil	VSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAVDYADLRRRKQDRTGESHG*
Ga0137363_107508682	3300012202	Vadose Zone Soil	MNFTHFVGTVSGSDVAMKLLDVARATLRITFRPRLELRVVRFFFDFRFVAAKVAADYADLLKQK
Ga0137379_109583091	3300012209	Vadose Zone Soil	VSGSDAAMKLLGFARAKLRTTFRPRFELRVPRFFFDLRFVAAKVAADYADLHRRKQDRTADYQIARMNC
Ga0137360_101294632	3300012361	Vadose Zone Soil	MNFTHFVGTVSGSDVAMKLLDVARATLRITFRPRLELRVVRFFFDLRFVAAKVAADYADLLKQKQD*
Ga0137360_107080062	3300012361	Vadose Zone Soil	VGTVSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAADYADL
Ga0137395_100797834	3300012917	Vadose Zone Soil	VSGSDAAMKLLGVARAKLRTTFRPRFELRVPRFFFDLRFVAAKVAAVYADLHRRKQDRTA
Ga0137394_103053193	3300012922	Vadose Zone Soil	VSGSDAAMKLLGVARAKLRTTFRPRFELRVPRFFFDLRFVAAKVAADYA
Ga0162652_1000097361	3300012941	Soil	MNFTHFVGTVSGSDAAMKLLGVARAKLRTTFRPRFELHVPRFFFDQRFVAAKVAADYADLP*
Ga0126375_105278671	3300012948	Tropical Forest Soil	MKLLDLARATLRTILRPRFELRAPRFFFDLRFDAAKVAADYADLCRRKQD
Ga0164303_101557762	3300012957	Soil	MNFTHFVGTVSGSDAAMKFLDVVRATLWITFRSRFELRVPRFFFDLRFVAAKVAAD*
Ga0164301_102914542	3300012960	Soil	GTVSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0164307_106992992	3300012987	Soil	MSGSDAAMKFLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0164307_118708071	3300012987	Soil	VSGSDAAVKLLGVARATLRTIFRPRVELRVPQFFFDLRFVAK
Ga0164305_117785342	3300012989	Soil	MKLLDVVRATLRTTFPPRFELRVPRFFCFDVRFVAKPSADYAELHKPMQD*
Ga0157374_111319502	3300013296	Miscanthus Rhizosphere	VSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0137403_105792951	3300015264	Vadose Zone Soil	MKLLGVARAKLRTTFRPRFELRVPRFFFDLRFVAAKVAADYADLHRRKQDRT
Ga0132256_1004189631	3300015372	Arabidopsis Rhizosphere	QIGSRKIAKINFTHFVGTVSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD*
Ga0132256_1026719252	3300015372	Arabidopsis Rhizosphere	VVRATLRTTFPPRFELRVPRSFFFDERFVAKSSADYAELHKPMQD*
Ga0132255_1004832811	3300015374	Arabidopsis Rhizosphere	VSGSDAAVKLLGVARATLRTIFRPRVELRVPRFFFDLRFVAKLSADYADLRR
Ga0132255_1023350602	3300015374	Arabidopsis Rhizosphere	VSGSDAAMKFLDVVRATLWITFRLRFELRVPRFFFDLRFVAAKVAAD*
Ga0182036_113683022	3300016270	Soil	VGTVSGSHVAMKLLDVARATLRTTFRPRFELRVRRFFFDLRLVAAKVAGDYADLRRRKQD
Ga0182033_115090582	3300016319	Soil	RKIPKINFTHFVGTMSGSGFAIKLLDLVRATLRTIFRPRLELRVPRFFFDLRFVAKSSADYADLRR
Ga0182035_118273142	3300016341	Soil	IRRARATLRTIFSPRPDLRPVRLFLDRRFVAAKVAADYADLRNEKQD
Ga0184621_100336923	3300018054	Groundwater Sediment	MKFLDEAGTTLRTTFPSRFELRVPRFFFDLRFVAAKVAADYADLHRR
Ga0184612_104459482	3300018078	Groundwater Sediment	ARAKLRTTTFRPRFELRVPRFFFDLRFVAAKVAAD
Ga0184625_105969982	3300018081	Groundwater Sediment	MKFLDEAGTTLRTTFPSRLELRVPRFFFDLRFVAAKVAADYADLHR
Ga0173479_100871202	3300019362	Soil	FVGTVSGSDAAVKFLGVARATLRTIFRPRVELRVPRFFFDLRFVAKLSADYADLRR
Ga0137408_10344773	3300019789	Vadose Zone Soil	MKLLGVARAKLRTTFRPRFELRVPRFFFDLRFVAAKVAADYAD
Ga0193756_10217932	3300019866	Soil	MKLLDEAGTTLRTTFPPRFELRVPRFFFDLRFVAAKVAADYA
Ga0193754_10125843	3300019872	Soil	NFTHFVGTVSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD
Ga0193713_12044322	3300019882	Soil	LDLARATLRTTFRSRFDLRVLRWFFDLRFVAAKLPADYAELRN
Ga0193747_10511142	3300019885	Soil	VSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAAD
Ga0193727_10032411	3300019886	Soil	VGTVSGSDSATKLLDVVRATLRTTFRLRFELRVPRFFFDLRFVAAKVAADYADLRRRN
Ga0193730_11831862	3300020002	Soil	MKLLDEAGTTLRTTFPPRFELRVPRFFFDLRFVAAKVAADYAD
Ga0210403_100097533	3300020580	Soil	MKLLDVARATLRITFRPCLELRVVRFFFDFRFVAAKVAADYADLLKQKQD
Ga0222621_10962091	3300021510	Groundwater Sediment	VGTVSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAADYADLHRR
Ga0207650_108923111	3300025925	Switchgrass Rhizosphere	MELLDVARATLRTTFRPRFELRVPRFFSFDLRFVAKSPADYADLRK
Ga0207701_104208732	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MYFLDEAGTTLRTTFPSRLELRVPRFFFDLRFVAAKVAAD
Ga0207690_104407771	3300025932	Corn Rhizosphere	MELLDVARATLRTTFRPRFELRVSRYFFDLRFVAKSSADYADLCKRKQ
Ga0207704_105161551	3300025938	Miscanthus Rhizosphere	MELLDVARATLRTTFRPRFELRVSRFFFDLRFVAKSSADYADLRK
Ga0207661_120652801	3300025944	Corn Rhizosphere	VGTVSGSDAAMKFLGVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAADYADLRRRKQDRTGD
Ga0207667_108341872	3300025949	Corn Rhizosphere	MELLDVARATLRTTFRPRFELRVSRFFFDLRFVAKSSADYADAVVSES
Ga0207698_105486832	3300026142	Corn Rhizosphere	MELLDVARATLRTTFRPRFELRVPRFFFDLRFVAAKVAAD
Ga0209801_10246901	3300026326	Soil	MKLLGVVRATLRTTFRPRFELRLPRFFFLDLRFVAKSSADYAECG
Ga0209802_10128981	3300026328	Soil	IGSRKIATINFTQRVGTVSDSSGATKLLAVPRATLWTTFRPRSDLRFARLLFDLRFVAAKVAADYADLHRQKQGRTAD
Ga0257146_10334152	3300026374	Soil	AKINFTHFVGTVSGSDAAMKPRGVVRATLRTTFRPRFELRVPRLFFDLRFVAAKVAADYADLRRRKQDRTGDCG
Ga0209811_103041901	3300027821	Surface Soil	MNFTHFVGTVSGSDAAMKLLDVVRATLRITFRPRFELRVPRFFFDLRFVAAKVAAD
Ga0207428_105066972	3300027907	Populus Rhizosphere	VSGFDAAVKLLDVARATLRTTFWPRLELRLPRFFLDLRFVAKSSADYADLRR
Ga0268266_100996884	3300028379	Switchgrass Rhizosphere	LLGVMRATLRMTFPPRLELRAPRLFFFDVRFVAKSSADYADLHEPMQD
Ga0268265_125516111	3300028380	Switchgrass Rhizosphere	MELLDVARATLRTTFRPRFELRVSRFFFDLRFVAKSSADY
Ga0307293_101749682	3300028711	Soil	VGTVSGSDAAMKLLDVVRATLWITFRPRFELRVPRFFFDLRFVAAKVAADYADLHRRK
Ga0307278_101116591	3300028878	Soil	VSGSDAATKLLGVVRAKLRTTFRPRFELRVPRFFFDLRFVAAKVAADYADLRSRKQDRTG
Ga0170818_1065623512	3300031474	Forest Soil	GTVSGSDAAMKLLGVARANLKTTFRPRFELRVPRFFFDLRFVAAKVAAD
Ga0307469_101761262	3300031720	Hardwood Forest Soil	VGTVSGSDAAMKPRGVVRATLRTTFRPRFELHVPRLFFDLRFVAAKVAADYADLRRRKQDRTGDCG
Ga0307469_120229761	3300031720	Hardwood Forest Soil	VGTVSGSDSATKLLDVVRATLRTTFRPRFELRVPRFFFDLRFVAAKVAADYADLRRRNQDRTGDCANIADVCRA
Ga0307473_102266812	3300031820	Hardwood Forest Soil	VSGSDAAMKLLDVVRATLRTTFRPRFELRVPRFFFDLRFVAAKVAADYADLH
Ga0310917_101034491	3300031833	Soil	MKFLDVVRATLRTIFRPRFELRVPPFFFDLRFVAKSSADYS
Ga0310892_102472731	3300031858	Soil	VGTVSGSDSAMKLREVVRATLRTTFPWRFELRVPRFFSFDVRFVAKSSADYAELYKPMQD
Ga0310912_110990411	3300031941	Soil	IPKINFTHFVGTVSGSDAAVKLLGVARATLRTIFRPRVELRVPRFFFDLRFVAKLSADYADLRR
Ga0310911_105690111	3300032035	Soil	MKFLDVVRATLRTIFRPRFELRVPPFFFDLRFVAKSFADYADLRR
Ga0307471_1008607612	3300032180	Hardwood Forest Soil	MKFLDLAGATLRTIFPPRFELRVPRFFFDLRFDAAKLAADYAELVEQKQD
Ga0307471_1015840252	3300032180	Hardwood Forest Soil	GSGAATKLRDLVRATLLTIVRPRSDLRLPRFFFDLRFVAAKVAQIRQI
Ga0306920_1000245641	3300032261	Soil	SRKIAKTNFTHLVGTVSGSGAAMKFLDVVRATLRTIFRPRFELRVPPFFFDLRFVAKSFADYADLRR
Ga0310810_110089552	3300033412	Soil	VSGSDAAMKLLDEAGTTLWTTFRPRFELRVPRFFFDLRFVAAKVAADYADLH
Ga0310810_112617052	3300033412	Soil	VSGFDAAVKLLDVARATLRTTFWPRLELRVPRFFLDLRFVAKSSADYADLRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081814

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences