Metagenome / Metatranscriptome Family F081799

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081799
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	121 residues
Representative Sequence	PFPWLCFSRSYLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRPRSM
Number of Associated Samples	103
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.74 %
% of genes from short scaffolds (< 2000 bps)	92.11 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.790 % of family members)
Environment Ontology (ENVO)	Unclassified (35.965 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.17% β-sheet: 6.96% Coil/Unstructured: 40.87%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00359	PTS_EIIA_2	24.56
PF13649	Methyltransf_25	9.65
PF07484	Collar	5.26
PF01757	Acyl_transf_3	5.26
PF12847	Methyltransf_18	4.39
PF16321	Ribosom_S30AE_C	4.39
PF06325	PrmA	2.63
PF13489	Methyltransf_23	1.75
PF05598	DUF772	1.75
PF08241	Methyltransf_11	0.88
PF04963	Sigma54_CBD	0.88
PF13683	rve_3	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	2.63
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	2.63
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	2.63
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.58 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.42 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.14 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.63 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terasakiellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae	6.14 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.63 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terasakiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella	6.14 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.63 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terasakiella pusilla	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	6.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.63 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.88 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terasakiella pusilla	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	6.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.63 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.88 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1083887	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300000956\|JGI10216J12902_123049509	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300001431\|F14TB_101603904	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300005328\|Ga0070676_10534713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	837	Open in IMG/M
3300005353\|Ga0070669_100258471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1389	Open in IMG/M
3300005356\|Ga0070674_100151513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1750	Open in IMG/M
3300005363\|Ga0008090_10249591	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005364\|Ga0070673_100153122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1954	Open in IMG/M
3300005367\|Ga0070667_100346800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1344	Open in IMG/M
3300005539\|Ga0068853_100277577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1544	Open in IMG/M
3300005547\|Ga0070693_100693272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	745	Open in IMG/M
3300005617\|Ga0068859_100051632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	4133	Open in IMG/M
3300005618\|Ga0068864_102274694	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300005764\|Ga0066903_103223116	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300005764\|Ga0066903_103658690	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005764\|Ga0066903_103658966	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005840\|Ga0068870_10737493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	683	Open in IMG/M
3300005844\|Ga0068862_102066725	All Organisms → cellular organisms → Bacteria → Proteobacteria	581	Open in IMG/M
3300005983\|Ga0081540_1256882	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300006038\|Ga0075365_11265986	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300006163\|Ga0070715_10639833	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300006800\|Ga0066660_11460949	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300006845\|Ga0075421_100431192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1578	Open in IMG/M
3300006846\|Ga0075430_100656165	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300006853\|Ga0075420_100402707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1183	Open in IMG/M
3300006969\|Ga0075419_11028521	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300006969\|Ga0075419_11410197	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300007255\|Ga0099791_10379901	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300009098\|Ga0105245_11584669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	707	Open in IMG/M
3300009162\|Ga0075423_11327312	All Organisms → cellular organisms → Bacteria → Proteobacteria	769	Open in IMG/M
3300009162\|Ga0075423_11422677	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300009162\|Ga0075423_11995415	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300009177\|Ga0105248_10427449	All Organisms → cellular organisms → Bacteria → Proteobacteria	1492	Open in IMG/M
3300009177\|Ga0105248_11190491	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300009545\|Ga0105237_11046300	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300010047\|Ga0126382_10452700	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300010048\|Ga0126373_12554004	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M
3300010361\|Ga0126378_11416611	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300010361\|Ga0126378_13197230	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300010366\|Ga0126379_10124242	All Organisms → cellular organisms → Bacteria → Proteobacteria	2351	Open in IMG/M
3300010375\|Ga0105239_10359381	All Organisms → cellular organisms → Bacteria → Proteobacteria	1644	Open in IMG/M
3300010376\|Ga0126381_101906047	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300010396\|Ga0134126_11642685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	706	Open in IMG/M
3300010398\|Ga0126383_12969195	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300010400\|Ga0134122_11150051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300010868\|Ga0124844_1226446	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300011270\|Ga0137391_10894539	All Organisms → cellular organisms → Bacteria → Proteobacteria	727	Open in IMG/M
3300012202\|Ga0137363_10037411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3398	Open in IMG/M
3300012205\|Ga0137362_10213253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1664	Open in IMG/M
3300012210\|Ga0137378_10311641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1464	Open in IMG/M
3300012212\|Ga0150985_118146199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	816	Open in IMG/M
3300012353\|Ga0137367_10897604	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300012356\|Ga0137371_10951428	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300012469\|Ga0150984_105458528	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300012532\|Ga0137373_10090147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2706	Open in IMG/M
3300012915\|Ga0157302_10403730	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300012927\|Ga0137416_10789412	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300012960\|Ga0164301_10049095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2160	Open in IMG/M
3300012985\|Ga0164308_10004717	All Organisms → cellular organisms → Bacteria → Proteobacteria	7123	Open in IMG/M
3300012986\|Ga0164304_10195324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	1317	Open in IMG/M
3300012986\|Ga0164304_10971922	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300013306\|Ga0163162_11594904	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300013307\|Ga0157372_11957604	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300014326\|Ga0157380_10564131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Terasakiellaceae → Terasakiella → Terasakiella pusilla	1119	Open in IMG/M
3300014968\|Ga0157379_11415979	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300014969\|Ga0157376_10847427	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300015372\|Ga0132256_100885665	All Organisms → cellular organisms → Bacteria → Proteobacteria	1009	Open in IMG/M
3300015372\|Ga0132256_102538180	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300015373\|Ga0132257_100425876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1617	Open in IMG/M
3300016404\|Ga0182037_10727871	All Organisms → cellular organisms → Bacteria → Proteobacteria	851	Open in IMG/M
3300016445\|Ga0182038_10811206	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300017965\|Ga0190266_11158487	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300018027\|Ga0184605_10069668	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300018051\|Ga0184620_10095900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300018073\|Ga0184624_10175903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	949	Open in IMG/M
3300018074\|Ga0184640_10218834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300018465\|Ga0190269_10718931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300019767\|Ga0190267_10865902	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300019875\|Ga0193701_1107145	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300020001\|Ga0193731_1009734	All Organisms → cellular organisms → Bacteria	2464	Open in IMG/M
3300021082\|Ga0210380_10506247	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300021344\|Ga0193719_10299783	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300025928\|Ga0207700_12007987	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300025933\|Ga0207706_10655123	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300025934\|Ga0207686_11193731	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300025960\|Ga0207651_10057179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2688	Open in IMG/M
3300026035\|Ga0207703_10443066	All Organisms → cellular organisms → Bacteria → Proteobacteria	1212	Open in IMG/M
3300026469\|Ga0257169_1035463	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300026482\|Ga0257172_1080413	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300027480\|Ga0208993_1018963	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300028379\|Ga0268266_11040748	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300028379\|Ga0268266_11680587	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300028381\|Ga0268264_10048803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3521	Open in IMG/M
3300028720\|Ga0307317_10214552	All Organisms → cellular organisms → Bacteria → Proteobacteria	649	Open in IMG/M
3300028787\|Ga0307323_10056836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1383	Open in IMG/M
3300028787\|Ga0307323_10070041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1246	Open in IMG/M
3300028796\|Ga0307287_10384320	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300028807\|Ga0307305_10427983	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300028810\|Ga0307294_10371531	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300031170\|Ga0307498_10304481	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300031231\|Ga0170824_100015586	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300031469\|Ga0170819_13997639	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300031474\|Ga0170818_110197243	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300031543\|Ga0318516_10689732	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300031546\|Ga0318538_10136682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1288	Open in IMG/M
3300031561\|Ga0318528_10076684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1728	Open in IMG/M
3300031680\|Ga0318574_10548403	All Organisms → cellular organisms → Bacteria → Proteobacteria	678	Open in IMG/M
3300031720\|Ga0307469_11344064	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300031736\|Ga0318501_10123116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1315	Open in IMG/M
3300031832\|Ga0318499_10209418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300031847\|Ga0310907_10240363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	886	Open in IMG/M
3300031947\|Ga0310909_10376233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1192	Open in IMG/M
3300032043\|Ga0318556_10609958	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M
3300032044\|Ga0318558_10625754	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.16%
Host-Associated	Host-Associated	36.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.77%
Plants	Host-Associated → Plants	36.84%
Aquatic	Environmental → Aquatic	4.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.65%
Sediment	Environmental → Aquatic → Sediment	3.51%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Roots	Host-Associated → Plants → Roots	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.53%
Loam	Environmental → Terrestrial → Soil → Loam	7.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.88%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10838872	3300000655	Forest Soil	SVHHFPGPNNLMEGHVGLPLPWLCFSRSYLTLCAWIGWLRGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKYLREFKMDRLAVRIAGLVLLQRYMMLKACA*
JGI10216J12902_1230495092	3300000956	Soil	MEGHVGLPIPWLCFSPSYLTLCAWIGWIRGTERDWRHRVRSNTEIMRFNNYPTKAKFHRIARAAGVEIAFVETDEFMFREGSRLKTAILKWLRNIKMDRLAVRIAGLVLLQRYMILKARA
F14TB_1016039041	3300001431	Soil	YLTLCAWIGWIRGTEMDWRHRVRSNTEIMRFNNYPTKAKLHRIARAAGVELAFVETDEFMFREGSRFKTAMLKWLRNVKMDRLAVRIAGLVLLQRYMILKARA*
Ga0070676_105347131	3300005328	Miscanthus Rhizosphere	YLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKATLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0070669_1002584713	3300005353	Switchgrass Rhizosphere	MEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0070674_1001515131	3300005356	Miscanthus Rhizosphere	SYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNDYPTKAKLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRPIKLDRLAVRIAGTVMLQRYMIVKPRAPLGFAQSA*
Ga0008090_102495911	3300005363	Tropical Rainforest Soil	GPNNLMEGHVGLPLPWLCFSRSYLTLCAWIGWLRGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKYLREFKMDRLAVRIAGLVLLQRYMMLKACA*
Ga0070673_1001531221	3300005364	Switchgrass Rhizosphere	NLPFPWLCFSRSYLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGLVMLQRYMILKPAR*
Ga0070667_1003468001	3300005367	Switchgrass Rhizosphere	AIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0068853_1002775771	3300005539	Corn Rhizosphere	PFPWLCFSRSYLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRPRSM*
Ga0070693_1006932721	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	NLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT
Ga0068859_1000516321	3300005617	Switchgrass Rhizosphere	SYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0068864_1022746942	3300005618	Switchgrass Rhizosphere	CAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGLVMLQRYMILKPAR*
Ga0066903_1032231161	3300005764	Tropical Forest Soil	LKPGAISIHSFPGPNNLMEGHVGLPFPWLCYSRAYLTLCAQLRVLRGVDTDWRHRVQSYADIMHFNNYPTKAKLKRIAHAAGVDIAFVEADEFLFRGGGRAAGALRHLRRLGLDRLAARTAGLVLFQRYMILKARS*
Ga0066903_1036586901	3300005764	Tropical Forest Soil	GAISIHSFPGPNNLMEGHVGLPFPWLCYSRAYLTLCAWLRVLRGIDTDWRHRVQSYADIMHFNNYPTKAKLKRIARAAGVDIAFVEADEFLFRGGGRAAGALRHLRKLGLDRLAARTAGMVLFQRYMILKARS*
Ga0066903_1036589661	3300005764	Tropical Forest Soil	LKPGAISIHSFPGPNNLMEGHVGLPFPWLCYSRAYLTLCAWWRVMRGAETDWRHRVQSYADIMRFNNYPTKAELKRIARTAGVDIAFVEADEFLFRGGGRAAGALRHLRKLGLDRLAARTAGLVLFQRYMILKGRS*
Ga0068870_107374932	3300005840	Miscanthus Rhizosphere	LPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0068862_1020667252	3300005844	Switchgrass Rhizosphere	YLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKATLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA*
Ga0081540_12568822	3300005983	Tabebuia Heterophylla Rhizosphere	IPWLCFSRSYLTLCAWIGWLRGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIEFVETDEFMFREGSRFKTAMLKRLRKVKMDRLAVRIAGLVLLQRYMILKARA*
Ga0075365_112659861	3300006038	Populus Endosphere	PFPWLCFSRSYLTLCAWISAIRGNEPDWRERVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRPIKLDRLAVRIAGTVMLQRYMILKPRLPIGFAQSA
Ga0070715_106398332	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	FSRSYLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA*
Ga0066660_114609492	3300006800	Soil	PIPWLCFSRSYLTLCAWIGWLRGSETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIEFVETDEFMFREGSRVKTAMLKWLRNVKMDRLAVRIAGLVLLQRYMILKARA*
Ga0075421_1004311921	3300006845	Populus Rhizosphere	HVGLPFPWLCYSRSYLTLCAWWRLLRGLDTDWRHRVQSYADIMRFNNYPTKAKLKRIATSAGVDIAFVEADEFLFRGGGRAAGALRHLRKLGLDRLAARTAGLVLFQRYMILKARS*
Ga0075430_1006561651	3300006846	Populus Rhizosphere	GHVGLPIPWLCFSPSYLTLCAWIGWIRGTERDWRHRVRSNTEIMRFNNYPTKAKLHRIARAAGVEIAFVETDEFMFREGSRLKTAILKWLRNIKMDRLAVRIAGLVLLQRYMILKARA*
Ga0075420_1004027071	3300006853	Populus Rhizosphere	LPIPWLCFSPSYLTLCAWIGWIRGTERDWRHRVRSNTEIMRFNNYPTKAKLHRIARTAGVEIAFVETDEFMFREGSRLKTAILKWLRNIKMVRLAVRIAGLVLLQRYMILKARA*
Ga0075419_110285211	3300006969	Populus Rhizosphere	HVNLPFPWLCFSRSYLTLCAWISAIRGTEPAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGLVMLQRYMILKPAR*
Ga0075419_114101971	3300006969	Populus Rhizosphere	PGPNNVMEGHVGLPFPWLCYSRAYLTLCAWLRVLRGVDTDWRHRVQSYADIMRFNNYPTKAKLRRIAASVGVDIAFTEADEFLFRGGGRAAGALGHLRKLGLDRLAARTAGLVLFQRYMILKARS*
Ga0099791_103799011	3300007255	Vadose Zone Soil	NFMEGHVGLPIPWLCFSRSYLTLCAWIAFLRRTETDWRHRLRSNIEIMRFNNYPTKAKLRKIARAAGVEIKFVEADEFMFREGSRFKTVILERLRTIKMDELAVRIAGLVLLQRYMILKARP*
Ga0105245_115846692	3300009098	Miscanthus Rhizosphere	PGPNNLMEGHVNLPFPWLCLSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADIRFVETDAFLFRGGGRAAPMLRRLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM*
Ga0075423_113273122	3300009162	Populus Rhizosphere	EGHVGLPFPWLCYSRSYLTVCAWLAWLSGSAPDWRERLRSYTEIMRFNNYPTKAQLRRTAHAARAEIHFMEVDEFLFREGSPLKTALLKRLHTVKMDRLAARMLGLVLLQRYMILKATKGSSSA*
Ga0075423_114226772	3300009162	Populus Rhizosphere	RSYLTLCAWIAWMRGTETDWRHRVRSNTEIMRFNNYPTKAKLRKIASAAGVEIRFVEAEEFMFREGSRFKTLILKCLRKIKMDELVVRIAGLILLQRYMVLRAP*
Ga0075423_119954151	3300009162	Populus Rhizosphere	VLKPSGLSLHNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGLVMLQRYMIVKPRPRSGFAQPA*
Ga0105248_104274491	3300009177	Switchgrass Rhizosphere	LHNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0105248_111904912	3300009177	Switchgrass Rhizosphere	LHNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA*
Ga0105237_110463001	3300009545	Corn Rhizosphere	FEHIFDYKTTMSEIVLVLKPNVLSLHNFPGPNNFMEGHDNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRPRSGFAQPA*
Ga0126382_104527003	3300010047	Tropical Forest Soil	CFSRSYLTLCAWITWIRGTETDWRHRVRSNTDIMRFNNYPTKAKLRKIASVAGVEIKFVEADEFMFREGSRFKTLILKWLRKIKMDELAVRIAGLVLLQRYMILRAP*
Ga0126373_125540041	3300010048	Tropical Forest Soil	GHVGLPLPWLCFSRSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKCLREFKMDRLAVRIAGLVLLQRYMMLKARA*
Ga0126378_114166112	3300010361	Tropical Forest Soil	TLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIANAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA*
Ga0126378_131972302	3300010361	Tropical Forest Soil	TLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRTARAAGVEIKFVETDEFMFREGSRFKTVTLKCLREFKMDRLAVRIAGLVLLQRYMMLKACA*
Ga0126379_101242421	3300010366	Tropical Forest Soil	GPNNLMEGHVGLPLPWLCFSRSYLTLCAWIGWLRGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFRTVTLKYLREFKMDRLAVRIAGLVLLQRYMMLKACA*
Ga0105239_103593811	3300010375	Corn Rhizosphere	LSLHNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0126381_1019060472	3300010376	Tropical Forest Soil	GPNNLMEGHVGLPLPWLCFSRSYLTLCAWIGWLRGTETDWRHRVGSNTEIMRFNNYPTKAKLRRTARAAGVEIKFVETDEFMFREGSRFKTVTLKYLREFKMDRLAVRIAGLVLLQRYMMLKACA*
Ga0134126_116426852	3300010396	Terrestrial Soil	CAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADIRFVETDAFLFRGGGRAAPMLRRLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM*
Ga0126383_129691951	3300010398	Tropical Forest Soil	HSFPGPNNLMEGHVGLPFPWLCYSRAYLTLCAWLRVLRGVDTDWRHRVQSYADIMHFNNYPTKAKLKRIARAAGVDIAFVEADEFLFRGGGRAAGALRHLRKLGLDRPAARTAGMVLFQRYMILKARS*
Ga0134122_111500511	3300010400	Terrestrial Soil	GTEPDWRARVRSNTEIMRFNNYPTKAKLRRMARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0124844_12264461	3300010868	Tropical Forest Soil	GHVGLPFPWLCYSRSYLTLCAWLAWLRGRAPDWRERARSYSEIMRFNNYPTKAQLRRIARAAGAEIHFREVDEFLFREGSPLKTALLKRLHAVKMDRLAARVLALVLLQRYMILEGSVGSS*
Ga0137391_108945392	3300011270	Vadose Zone Soil	PIPWLCFSRSYLTLCAWIAFLRRTETDWRHRLRSNIEIMRFNNYPTKAKLRKIARAAGVEIKFVEADEFMFREGSRFKTVILERLRTIKMDELAVRIAGLVLLQRYMILKARP*
Ga0137363_100374115	3300012202	Vadose Zone Soil	VGLPIPWLCFSRSYLTLCAWIAFLRRTETDWRHRLRSNIEIMRFNNYPTKAKLRKIARAAGVEIKFVEADEFMFREGSRFKTVILERLRTIKMDELAVRIAGLVLLQRYMILKARP*
Ga0137362_102132534	3300012205	Vadose Zone Soil	VHHFPGPNNFMEGHVGLPIPWLCFSRSYLTLCAWIAFLRRTETDWRHRLRSNIEIMRFNNYPTKAKLRKIARAAGVEIKFVEADEFMFREGSRFKTVILERLRTIKMDELAVRIAGLVLLQRYMILKARP*
Ga0137378_103116411	3300012210	Vadose Zone Soil	GPNNLMEGHVGLPIPWLCFSRAYLTLCAWIGWIRGSEMDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIEFVETDEFMFREGSRVKTAMLKWLRNVKMDRLAVSIAGLVLLQRYMILKARA*
Ga0150985_1181461992	3300012212	Avena Fatua Rhizosphere	KPGGLSLHNFPGPNNLMEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRERARGNTEIMLFNNYPTKAKLRRIARSAGAEIRFVETEAFLFRGGGRAAPMLKWLRTIKLDRLAVRIAGAVMLQRYMIVKPRPSSM*
Ga0137367_108976042	3300012353	Vadose Zone Soil	SVHHFPGPNNLMEGHVGLPIPWLCFSRSYLTLCAWIGWIRGTEMDWRHRVRSNTEIMRFNNYPTKAKLHRIARAAGVELAFVETDEFMFREDSRFKTAMLKWLRNVKMDRLAVRIAGLVLLQRYMILKARA*
Ga0137371_109514281	3300012356	Vadose Zone Soil	GPNYFMEGHVGLPFPWLCYSRSYLTLCAWLAWLSGSEPDWRSRVRSYTEIMRFNNYPTKAKLRRIARAAGVEIHFAETEEFMFREGSRLKTALLEQLGKIKMDRLAVRVFGLVLLHRYIVLKANPLAPAVQG*
Ga0150984_1054585281	3300012469	Avena Fatua Rhizosphere	LPFPWLCFSRSYLTLCAWIPAIRGNEPDWRARVRSNTEIIRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA*
Ga0137373_100901471	3300012532	Vadose Zone Soil	HVGLPIPWLCFSRAYLTLCAWIGWLRGSETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIEFVETDEFMFREGSRVKTAMLKWLRNVKMDRLAVRIAGLVLLQRYMILKARA*
Ga0157302_104037301	3300012915	Soil	GLSLHNFPGPNNFMEGHVNLLFPWLCFSRSYLTLCAWISAIRGTEPDWRSRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGMVMLQRYMIVKPRPRSGFAQPA*
Ga0137416_107894121	3300012927	Vadose Zone Soil	PGAISVHHFPGPNNFMEGHVGLPIPWLCFSRSYLTLCAWIAFLRRTETDWRHRLRSNIEIMRFNNYPTKAKLRKIARAAGVEIKFVEADEFMFREGSRFKTVILERLRTIKMDELAVRIAGLVLLQRYMILKARP*
Ga0164301_100490953	3300012960	Soil	FNLSFPWLCFSRSYLTLCAWISAIRGNEPDWCSRDTGNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0164308_1000471710	3300012985	Soil	CFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSGGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT*
Ga0164304_101953241	3300012986	Soil	NLPFPWLCFSRSYLTLCAWISAIRGTEPDWRERVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPVLKWLRTIKLDRLAVRIAGTVMLQRYMILKPRGQSGLVQPA*
Ga0164304_109719222	3300012986	Soil	LHNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGKEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADIGFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGLVMLQRYMILKPAR*
Ga0163162_115949041	3300013306	Switchgrass Rhizosphere	TLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA*
Ga0157372_119576041	3300013307	Corn Rhizosphere	IRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLKQPA*
Ga0157380_105641311	3300014326	Switchgrass Rhizosphere	GGLSLHNFPGPNNLMEGHVNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRSRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMRPT*
Ga0157379_114159792	3300014968	Switchgrass Rhizosphere	SYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA*
Ga0157376_108474272	3300014969	Miscanthus Rhizosphere	LCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADIRFVETDAFLFRGGGRAAPMLRRLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM*
Ga0132256_1008856652	3300015372	Arabidopsis Rhizosphere	HNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETDAFLFRGGGRAAPMLRWLRPIKLDRLAVRIAGTVMLQRYMIVKPRLQSI*
Ga0132256_1025381801	3300015372	Arabidopsis Rhizosphere	LTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGLVMLQRYMIVKPRPRSGFAQPA*
Ga0132257_1004258762	3300015373	Arabidopsis Rhizosphere	SYLTLCAWISAIRGTEPDWRERVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPVLKWLRTIKLDRLAVRIAGTVMLQRYMILKPRGQSGLVQPV*
Ga0182037_107278712	3300016404	Soil	CFSRSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0182038_108112061	3300016445	Soil	PGPNNLMEGHVGLPLPWLCFSHSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0190266_111584872	3300017965	Soil	GLSLHNFPGPNNLMEGHVNLPFPRLCFSRSYLTLCAWISAMRGKEPDWRGRVRSNTEIMRFNNYPTKATLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM
Ga0184605_100696682	3300018027	Groundwater Sediment	MSEIVCVLKPDGISIHNFPGPNNFMEGHVGLPFPWLCYSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRLARAAGADISFVETEAFMFRGGGRAAPMLEWLRTIKMDRLAVQIAGSVMLQRYMILKRVTDQPSSPTRRADGP
Ga0184620_100959002	3300018051	Groundwater Sediment	LTLCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQTAGLVLLQRYMLLKAPPTAQREVRG
Ga0184624_101759032	3300018073	Groundwater Sediment	NNLMEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRPIKLDRLAVRIAGTVMLQRYMIVKPRAPLGFAQSA
Ga0184640_102188342	3300018074	Groundwater Sediment	GLPFPWLCFSRSYLTLCAWISVIRGTEADWRSRVRSNAEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQIAGLVLLQRYMLLKAPPTAQREVRG
Ga0190269_107189312	3300018465	Soil	NLPFPWLCFSRSYLTVCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKATLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRTIKLDRLVVQIAGTVMLQRYMIVKPRTRSI
Ga0190267_108659021	3300019767	Soil	GPNNLMEGHVDLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKATLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVRIAGTVMLQRYMIVKPRTRSI
Ga0193701_11071452	3300019875	Soil	LCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQIAGLVLLQRYMLLKAPPTAQREVRG
Ga0193731_10097343	3300020001	Soil	MEGHVGLPFPWLCFSRSYLTLCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEIAFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQIAGLVLLQRYMLLKAPPTAQREVRG
Ga0210380_105062472	3300021082	Groundwater Sediment	WISAMRGKEPDWRGRVRSNTEIMRFNNYPTKATLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM
Ga0193719_102997831	3300021344	Soil	FPGPNNLMEGHVGLPFPWLCFSRSYLTLCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQTAGLVLLQRYMLLKAPPTAQREVRG
Ga0207700_120079871	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	TLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT
Ga0207706_106551232	3300025933	Corn Rhizosphere	LPFPWLCFSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADIRFVETDAFLFRGGGRAAPMLRRLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM
Ga0207686_111937312	3300025934	Miscanthus Rhizosphere	RVLKPGGLSLHNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA
Ga0207651_100571794	3300025960	Switchgrass Rhizosphere	IVRVLKPGGLSLHNFPGPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKMDRLAVKIAGLVMLQRYMILKPAR
Ga0207703_104430662	3300026035	Switchgrass Rhizosphere	IFDYKTTMSEIVQVLKPGGLSLHNFPGPNNLMEGHVNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADIRFVETDAFLFRGGGRAAPMLRRLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM
Ga0257169_10354631	3300026469	Soil	AWIAFLRRTETDWRHRLRSNIEIMRFNNYPTKAKLRKIARAAGVEIKFVEADEFMFREGSRFKTVILERLRTIKMDELAVRIAGLVLLQRYMILKARP
Ga0257172_10804132	3300026482	Soil	PGAISVHHFPGPNNFMEGHVGLPIPWLCFSRSYLTLCAWIAFLRRTETDWRHRLRSNIEIMRFNNYPTKAKLRKIARAAGVEIKFVEADEFMFREGSRFKTVILERLRTIKMDELAVRIAGLVLLQRYMILKARP
Ga0208993_10189632	3300027480	Forest Soil	CAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGVDIGFVETEAFMFRRGGRVAPMLEWLRTIKLDRLAVQIAGSVVLQRYMILKPRPQSRFMQTP
Ga0268266_110407482	3300028379	Switchgrass Rhizosphere	GPNNFMEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRERVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETDAFLFRGGGRAAPMLRWLRPIKLDRLAVRIAGTVMLQRYMIVKPRLQSI
Ga0268266_116805871	3300028379	Switchgrass Rhizosphere	FPGPNNLMEGHVNLPFPWLCFSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRRSGLTQPA
Ga0268264_100488031	3300028381	Switchgrass Rhizosphere	AWISAIRGNEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSMQPT
Ga0307317_102145521	3300028720	Soil	PGPNNLMEGHVGLPFPWLCFSRSYLTLCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQIAGLVLLQRYMLLKAPPTAQREVRG
Ga0307323_100568361	3300028787	Soil	NFPGPNNLMEGHVGLPFPWLCFSRSYLTLCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQIAGLVLLQRYMLLKAPPTAQREVRG
Ga0307323_100700411	3300028787	Soil	MSEIVCVLKPDGISIHNFPGPNNFMEGHVGLPFPWLCYSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRLARSAGADISFVETEAFMFRGGGRAAPMLEWLRTIKMDRLAVQIAGSVMLQRYMILKRVTDQPSSPTRRADGP
Ga0307287_103843202	3300028796	Soil	YLTLCAWISAMRGKEPDWRGRVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVRIAGTVMLQRYMIVKPRPRSM
Ga0307305_104279832	3300028807	Soil	AWVAWIRGTETDWRHRLRSYTEIMRFNNYPTKAKLRRIARAAGVEIEFVETEEFMFHGGSRFKIATLKWLRTIKMDRLAVRIGGLVLLQRYMILKARA
Ga0307294_103715311	3300028810	Soil	FSRSYLTLCAWISAIRGTDPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRPRSGLAQPA
Ga0307498_103044812	3300031170	Soil	NFMEGHVNLPFPWLCYSRSYLTLCAWISAIRGNEPDWRGRVRSNTEIMCFNNYPTKAKLRRIARSAGADISFVETEAFMFRGGGRAAPMLEWLRTIKMDRLAVQIAGSVMLQRYMILKPLHRSTAIAHEAS
Ga0170824_1000155862	3300031231	Forest Soil	MEGHVGLPFPWLCFKRSYLALCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEIAFLEVDAFMFRGGGRAAPMLEWLRKIKLDRLAVQIAGLVLLQRYMLLKAPSTARRRVRG
Ga0170819_139976392	3300031469	Forest Soil	MSLHNFPGPNNLMKGHVGLPFPWLCFSRSYLTLCAWISAIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQIAGLVLLQRYMLLKAPPTAQREVRG
Ga0170818_1101972432	3300031474	Forest Soil	MEGHVGLPFPWLCFKRSYLALCAWISVIRGTETDWRGRVRSNTEIMRFNNYPTKAKLRKIARSAGVEITFLEVDAFMFRGGGRAAPMLKWLRKIKLDRLAVQIAGLVLLQRYMLLKAPSTARRRVRG
Ga0318516_106897322	3300031543	Soil	HHFPGPNNLMEGHVGLPLPWLCFSRSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0318538_101366821	3300031546	Soil	PNNLMEGHVGLPLPWLCFSRSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0318528_100766843	3300031561	Soil	PGPNNLMEGHVGLPLPWLCFSRSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0318574_105484031	3300031680	Soil	MEGHVGLPLPWLCFSLSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0307469_113440642	3300031720	Hardwood Forest Soil	CPWLCFSRSYLTLCAWISAIRGTEPDWRARVRSNTEIMRFNNYPTKAKLRRIARSAGADISFVETEAFLFRGGGRAAPMLRWLRTIKLDRLAVQIAGTVMLQRYMIVKPRRQSGLTQPA
Ga0318501_101231161	3300031736	Soil	GLPLPWLCFSRSYLTLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0318499_102094182	3300031832	Soil	PGAVSLHNFPGPNYLMEGHVGLPFPWLCTSRSYLTLCALLAWLRGRAPDWRERAKSYSEIMRFNNYPTKGQLRRIARAAGAEIHFMEVDEFLFREGSALKTALLKRLRTVKMDRLAARMLGLVLLQRYMILKAPEGSS
Ga0310907_102403632	3300031847	Soil	GPNNLMEGHVNLPFPWLCFSRSYLTLCAWISAIRGNEPDWRARVRSNTEIMRFNNYPTKATLRRIARSAGADIRFVETEAFLFRGGGRAAPMLRWLRPIKLDRLAVRIAGTVMLQRYMIVKPRAPLGFAQSA
Ga0310909_103762331	3300031947	Soil	TLCAWIGWLHGTETDWRHRVRSNTEIMRFNNYPTKAKLRRIARAAGVEIKFVETDEFMFREGSRFKTVTLKVLRDFKMDRLAVRIAGLVLLQRYMMLKARA
Ga0318556_106099582	3300032043	Soil	NYLMEGHVGLPFPWLCTSRSYLTLCALLAWLRGRAPDWRERAKSYSEIMRFNNYPTKGQLRRIARAAGAEIHFMEVDEFLFREGSALKTALLKRLRTVKMDRLAARMLGLVLLQRYMILKAPEGSS
Ga0318558_106257542	3300032044	Soil	LMEGHVGLPFPWLCTSRSYLTLCALLAWLRGRAPDWRERAKSYSEIMRFNNYPTKGQLRRIARAAGAEIHFMEVDEFLFREGSALKTALLKRLRTVKMDRLAARMLGLVLLQRYMILKAPEGSS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081799

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences