Metagenome / Metatranscriptome Family F081794

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F081794
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	65 residues
Representative Sequence	YRGKHLQLTFTVDDPSVFTTPWSATVTYGKPAVEWAENVCAENPRKYGTEEDAQVPTAGKPDF
Number of Associated Samples	96
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.63 %
% of genes near scaffold ends (potentially truncated)	94.74 %
% of genes from short scaffolds (< 2000 bps)	92.98 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (85.088 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.193 % of family members)
Environment Ontology (ENVO)	Unclassified (39.474 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.982 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 24.18% Coil/Unstructured: 75.82%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00561	Abhydrolase_1	8.77
PF07883	Cupin_2	4.39
PF13372	Alginate_exp	1.75
PF13531	SBP_bac_11	1.75
PF00171	Aldedh	1.75
PF13924	Lipocalin_5	1.75
PF14300	DUF4375	0.88
PF03466	LysR_substrate	0.88
PF00664	ABC_membrane	0.88
PF05726	Pirin_C	0.88
PF08681	DUF1778	0.88
PF05221	AdoHcyase	0.88
PF07077	DUF1345	0.88
PF06172	Cupin_5	0.88
PF09865	DUF2092	0.88
PF00384	Molybdopterin	0.88
PF12697	Abhydrolase_6	0.88
PF13442	Cytochrome_CBB3	0.88
PF11967	RecO_N	0.88
PF00589	Phage_integrase	0.88
PF09335	SNARE_assoc	0.88
PF01717	Meth_synt_2	0.88
PF07238	PilZ	0.88
PF00665	rve	0.88
PF09037	Sulphotransf	0.88
PF09084	NMT1	0.88
PF01738	DLH	0.88
PF17170	DUF5128	0.88
PF10609	ParA	0.88
PF02548	Pantoate_transf	0.88
PF00034	Cytochrom_C	0.88
PF13432	TPR_16	0.88
PF00188	CAP	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.75
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.75
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.75
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.88
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.88
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.88
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.88
COG4424	LPS sulfotransferase NodH	Cell wall/membrane/envelope biogenesis [M]	0.88
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.88
COG3542	Predicted sugar epimerase, cupin superfamily	General function prediction only [R]	0.88
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.88
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.88
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.88
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.88
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.88
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.88
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.88
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.88
COG0413	Ketopantoate hydroxymethyltransferase	Coenzyme transport and metabolism [H]	0.88
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.09 %
Unclassified	root	N/A	14.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.09 %
Unclassified	root	N/A	14.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.09 %
Unclassified	root	N/A	14.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.35 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	25.44 %
Unclassified	root	N/A	14.91 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	1.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.81 %
Unclassified	root	N/A	14.91 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1.75 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.91 %
Unclassified	root	N/A	14.91 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.75 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1.75 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	14.91 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	11.40 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.75 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.75 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	0.88 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.88 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.88 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	14.91 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	11.40 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1.75 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.88 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.88 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.88 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.88 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	14.91 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	11.40 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1.75 %
Sphingomonas colocasiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas colocasiae	0.88 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.88 %
Lichenibacterium minor	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium minor	0.88 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.88 %
Afipia broomeae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae	0.88 %
Kocuria	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Kocuria	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.81 %
Unclassified	root	N/A	14.91 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	11.40 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1.75 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.88 %
Kocuria rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Kocuria → Kocuria rosea	0.88 %
Novosphingobium sp. Rr 2-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	0.88 %
Sphingomonas colocasiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas colocasiae	0.88 %
Lichenibacterium minor	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium minor	0.88 %
Afipia broomeae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005093\|Ga0062594_101164693	Not Available	760	Open in IMG/M
3300005336\|Ga0070680_100513117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1026	Open in IMG/M
3300005406\|Ga0070703_10191474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300005451\|Ga0066681_10433289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	807	Open in IMG/M
3300005526\|Ga0073909_10718095	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300005530\|Ga0070679_100254453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1712	Open in IMG/M
3300005533\|Ga0070734_10532704	Not Available	669	Open in IMG/M
3300005543\|Ga0070672_101615633	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005554\|Ga0066661_10324992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	945	Open in IMG/M
3300005563\|Ga0068855_100292887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1804	Open in IMG/M
3300005568\|Ga0066703_10546842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	681	Open in IMG/M
3300006057\|Ga0075026_100818554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300006163\|Ga0070715_10790115	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300006755\|Ga0079222_10064711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1770	Open in IMG/M
3300006800\|Ga0066660_11669262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300006804\|Ga0079221_10096014	All Organisms → cellular organisms → Bacteria → Proteobacteria	1445	Open in IMG/M
3300006806\|Ga0079220_11830516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	536	Open in IMG/M
3300006845\|Ga0075421_101145851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300007258\|Ga0099793_10491532	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300007788\|Ga0099795_10171722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	901	Open in IMG/M
3300009088\|Ga0099830_10933788	Not Available	718	Open in IMG/M
3300009098\|Ga0105245_11282297	Not Available	781	Open in IMG/M
3300009100\|Ga0075418_12108396	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300009143\|Ga0099792_10060339	All Organisms → cellular organisms → Bacteria	1880	Open in IMG/M
3300009143\|Ga0099792_10257569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1018	Open in IMG/M
3300009148\|Ga0105243_10626349	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300009148\|Ga0105243_11145064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300009181\|Ga0114969_10228743	All Organisms → cellular organisms → Bacteria → Proteobacteria	1128	Open in IMG/M
3300009551\|Ga0105238_12308209	Not Available	573	Open in IMG/M
3300009678\|Ga0105252_10258174	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300010047\|Ga0126382_10534533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Kocuria → Kocuria rosea	950	Open in IMG/M
3300010359\|Ga0126376_10054623	All Organisms → cellular organisms → Bacteria → Proteobacteria	2844	Open in IMG/M
3300010359\|Ga0126376_11282153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	752	Open in IMG/M
3300010360\|Ga0126372_11157722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	795	Open in IMG/M
3300010362\|Ga0126377_11324872	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300010362\|Ga0126377_13540457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	505	Open in IMG/M
3300010397\|Ga0134124_12231160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300010399\|Ga0134127_10585576	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300010403\|Ga0134123_10604121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas colocasiae	1055	Open in IMG/M
3300010403\|Ga0134123_10907285	Not Available	888	Open in IMG/M
3300010403\|Ga0134123_12544145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300011120\|Ga0150983_11102580	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300011120\|Ga0150983_15877009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300011269\|Ga0137392_10656496	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300011271\|Ga0137393_11073028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	685	Open in IMG/M
3300012096\|Ga0137389_10826968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300012096\|Ga0137389_11071381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300012096\|Ga0137389_11692758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300012160\|Ga0137349_1045095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300012199\|Ga0137383_10805948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300012202\|Ga0137363_10436127	Not Available	1095	Open in IMG/M
3300012203\|Ga0137399_10315500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1293	Open in IMG/M
3300012205\|Ga0137362_11592539	Not Available	540	Open in IMG/M
3300012206\|Ga0137380_10660446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	910	Open in IMG/M
3300012206\|Ga0137380_11391056	Not Available	586	Open in IMG/M
3300012210\|Ga0137378_10439901	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300012211\|Ga0137377_10565193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300012211\|Ga0137377_10620164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1018	Open in IMG/M
3300012917\|Ga0137395_10958602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	615	Open in IMG/M
3300012925\|Ga0137419_10924799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	719	Open in IMG/M
3300012927\|Ga0137416_11108165	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300012944\|Ga0137410_10161747	Not Available	1713	Open in IMG/M
3300012944\|Ga0137410_10382669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300012971\|Ga0126369_12237625	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300012971\|Ga0126369_12359539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	618	Open in IMG/M
3300012971\|Ga0126369_13005671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	552	Open in IMG/M
3300012986\|Ga0164304_10382555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	994	Open in IMG/M
3300014878\|Ga0180065_1016423	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300014968\|Ga0157379_12121918	Not Available	557	Open in IMG/M
3300015241\|Ga0137418_10874802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300015242\|Ga0137412_10759775	Not Available	715	Open in IMG/M
3300015245\|Ga0137409_10049615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3989	Open in IMG/M
3300015245\|Ga0137409_10329239	Not Available	1336	Open in IMG/M
3300015245\|Ga0137409_10420434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1154	Open in IMG/M
3300015371\|Ga0132258_11422810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1751	Open in IMG/M
3300016294\|Ga0182041_10049540	All Organisms → cellular organisms → Bacteria → Proteobacteria	2833	Open in IMG/M
3300017930\|Ga0187825_10060110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1291	Open in IMG/M
3300018084\|Ga0184629_10191649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1053	Open in IMG/M
3300019212\|Ga0180106_1103790	All Organisms → cellular organisms → Bacteria → Acidobacteria	724	Open in IMG/M
3300019248\|Ga0180117_1002874	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300019249\|Ga0184648_1012825	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300019377\|Ga0190264_10808374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300020581\|Ga0210399_10815788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300021344\|Ga0193719_10469866	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300021401\|Ga0210393_10589642	Not Available	908	Open in IMG/M
3300021432\|Ga0210384_10909716	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300021432\|Ga0210384_11287023	Not Available	636	Open in IMG/M
3300021479\|Ga0210410_11768343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300022532\|Ga0242655_10075824	All Organisms → cellular organisms → Bacteria → Proteobacteria	882	Open in IMG/M
3300022722\|Ga0242657_1036127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300022724\|Ga0242665_10033336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1281	Open in IMG/M
3300024331\|Ga0247668_1009438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2042	Open in IMG/M
3300024347\|Ga0179591_1137703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2225	Open in IMG/M
3300025921\|Ga0207652_10471257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300025928\|Ga0207700_10653394	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300025949\|Ga0207667_10778436	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300026320\|Ga0209131_1008061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	6627	Open in IMG/M
3300026320\|Ga0209131_1155282	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	1150	Open in IMG/M
3300027645\|Ga0209117_1149475	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	611	Open in IMG/M
3300027754\|Ga0209596_1131918	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300027787\|Ga0209074_10456392	Not Available	547	Open in IMG/M
3300027826\|Ga0209060_10548346	Not Available	524	Open in IMG/M
3300027903\|Ga0209488_10088350	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2313	Open in IMG/M
3300031231\|Ga0170824_119706552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300031712\|Ga0265342_10666154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium minor	522	Open in IMG/M
3300031716\|Ga0310813_11734356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	585	Open in IMG/M
3300031740\|Ga0307468_101747764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300031820\|Ga0307473_11147114	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	575	Open in IMG/M
3300031942\|Ga0310916_10923435	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
3300032076\|Ga0306924_11545842	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300032205\|Ga0307472_102133543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300033158\|Ga0335077_10739145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009	Open in IMG/M
3300033433\|Ga0326726_10167692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae	2012	Open in IMG/M
3300034090\|Ga0326723_0390485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.47%
Host-Associated	Host-Associated	10.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.82%
Plants	Host-Associated → Plants	10.53%
Aquatic	Environmental → Aquatic	9.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.89%
Freshwater	Environmental → Aquatic → Freshwater	5.26%
Sediment	Environmental → Aquatic → Sediment	4.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.63%
Peat	Environmental → Terrestrial → Peat	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.30%
Loam	Environmental → Terrestrial → Soil → Loam	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.39%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.63%
Lake	Environmental → Aquatic → Freshwater → Lake	1.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.39%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.39%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.63%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.63%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014878	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019212	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT25_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062594_1011646931	3300005093	Soil	TPWSATVTYRHMTEDQWVENVCAENPRKYGTEEDAQVPTATMPDF*
Ga0070680_1005131171	3300005336	Corn Rhizosphere	TLPLPAAVDLNYRGKYLQLQFTVEDPTVFTTPWTATVTYGRPVGDWAENVCGENPRKYGTERDARLPTATNPDF*
Ga0070703_101914741	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VDDPSVFTTRWSATVTYGKPVDDEWRENICAENPNKYGTETDAQVPTAAKLDF*
Ga0066681_104332891	3300005451	Soil	NSAIEPFDRDPNYRGKYLQLLFTVEDQGVFTTPWSATVTYGRPLGEWLENVCAENPHKYGAEKDAQVPTADKPDF*
Ga0073909_107180952	3300005526	Surface Soil	DDDAVFTMPWSATVTYGRPFGEWLENVCAENPRKYGTEKDVQVPTADRPDF*
Ga0070679_1002544531	3300005530	Corn Rhizosphere	LPLPAAVDLNYRGKYLQLQFTVEDPNVFTSPWAATVTYGRPVTEWAENVCGENPRKYGTERDTRLPTASMPDF*
Ga0070734_105327041	3300005533	Surface Soil	NYRGKYLQLWFTVEDKQFFTTPWSATVTYGRPKTEWLENVCAENPFKYGTERDAQVPTAATPDF*
Ga0070672_1016156333	3300005543	Miscanthus Rhizosphere	ALPAPAAVDLSYRGKHLQLTFTVEDPTVFTTPWTATVTMGKPVVEWAENVCAENPRKYGTEEDAQVPTAAKPDF*
Ga0066661_103249922	3300005554	Soil	MDPNYRGKYLQLLFTVEDEAVFTTPWSATVTYGRPLGQWLENVCADNPHKYGTERDAQVPTADKSDF*
Ga0068855_1002928874	3300005563	Corn Rhizosphere	VFTTPWSATVTYRHMTQDQWLENVCAENPRKYGTEEDAQVPTAEAPDF*
Ga0066703_105468422	3300005568	Soil	DYRGKHLQLTFTVEDEGVFTMPWSATVTFGHPADPWLELVCAENPNKYGTEKDARIPTAAKPDF*
Ga0075026_1008185542	3300006057	Watersheds	ENARPNPLTVDLSYRGKHLQLFITVEDPNVFTTPWSTTVTYGKPVLEWAEQVCAENPHKYGTEEDAQVPTANKPDF*
Ga0070715_107901151	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	ITVEDPNVFTTPWSTTVTYGKPVLEWAEQVCAENPHKYGTEEDAQVPTAAVADF*
Ga0079222_100647113	3300006755	Agricultural Soil	GKHLQLYFTVDDPNVFTTPWSATVTYGRINPLPGRVSQISEWEENVCAENPLKYGTERDAQVPTAAKADF*
Ga0066660_116692621	3300006800	Soil	LQLLFTVEDPNVFTTPWSASVTYGRPEVDWVEAVCAENPKKYGTEEDAQIPTAAVRDF*
Ga0079221_100960142	3300006804	Agricultural Soil	EPFGMDPGYRGKYLQLLVTVDDTGVFTQPWSATVTYGRPFGEWLELVCAENPRKYGSEKDVQVPTADKPDF*
Ga0079220_118305161	3300006806	Agricultural Soil	VFTTPWSATVTYRHMSQDQWLENVCAENPRKYGTEEDAQVPTAKAPDF*
Ga0075421_1011458511	3300006845	Populus Rhizosphere	SVFTTRWSATVTYGKPVDEWVENVCAENPNKYGTERDAQVPTAAKPDF*
Ga0099793_104915322	3300007258	Vadose Zone Soil	LQLLVTVEDPNVLTTPWSATVTYGKPVLEWVEQVCAENPHNYGTEEDAQIPTADKPDF*
Ga0099795_101717221	3300007788	Vadose Zone Soil	KENFRAQPANMDANYRGKYLQLLFTVEDPNVFTTPWSATVTYGKPAVEWVEAVCAENPKKYGTEEDAQVPTANKPDF*
Ga0099830_109337881	3300009088	Vadose Zone Soil	KEGLERDGKENARPQPLTVDLSFRGKHLQLYITVDDPNVFTTPWSTTVTYGKPVLEWVEQVCSENPRKYGTEEDAQIPTANKLDF*
Ga0105245_112822972	3300009098	Miscanthus Rhizosphere	NALPQPAAIDLNYRGKYLQLQFTVEDPTVFTTPWTATVTYGRPAVDWAENVCGENPRKYGTEQDARIPTAAKADF*
Ga0075418_121083962	3300009100	Populus Rhizosphere	KHLQLTFTVEDESVFTTRWSATVTYGKPVDDEWRENICAENPNKYGTERDAQVPTAAKPDF*
Ga0099792_100603391	3300009143	Vadose Zone Soil	KENFGPRIINSAIEPFDMDRNYRGKYLQLLFTVEDQGVFTTPWSATVTYGRPLGEWLENVCAENPHKYGTEKDVAVPTADKPDF*
Ga0099792_102575691	3300009143	Vadose Zone Soil	GLDRDAKENFRAQPANMDANYRGKYLQLLFTVEDPNVFTTPWSATVTYGKPAVEWVEAVCAENPKKYGTEEDAQVPTANKPDF*
Ga0105243_106263491	3300009148	Miscanthus Rhizosphere	WNFRGKHLQLLFTVEDPNVFTTPWSATVTYGKPAVDWIEQVCAENPNKYGTEEDAKVPTATKPDF*
Ga0105243_111450641	3300009148	Miscanthus Rhizosphere	PATVDLSYRGKHLQLTFEVDDPSVFTTRWSATVTYGKPVDDEWRENICAENPNKYGTERDAQVPTAAKPDF*
Ga0114969_102287431	3300009181	Freshwater Lake	TTPWSATVTYRHMIQDQWVENVCAENPRKYGTEEDAQVPTATTPDF*
Ga0105238_123082092	3300009551	Corn Rhizosphere	YLQLLVTVEDANVFTMPWSATVTYGRPFGPWLELVCAENPRKYGTERDVQVPAAETPDF*
Ga0105252_102581741	3300009678	Soil	GKHLQLTFTVEDPAVFTTPWSATVTYGKPVDGWLENVCAENPNKYGTERDAQVPTAAKPDF*
Ga0126382_105345331	3300010047	Tropical Forest Soil	VFTTPWSATVTYGRPFGEWLENVCAENPRKYGTEKDVQVPTADKPDF*
Ga0126376_100546231	3300010359	Tropical Forest Soil	PQPPAVDLAYRGKHLQLTFTVEDPTVFTTPWSSTVTFGKSAVAWGENVCAENPNKYGTERDARVPTADKADF*
Ga0126376_112821532	3300010359	Tropical Forest Soil	KYLQLYVTVDDEGVFTTPWSATVTYGRPFSEWLELVCAENPRKYGTEKDVQVPTADKPDF
Ga0126372_111577222	3300010360	Tropical Forest Soil	FDPDYRGKVLQLLFTVDDPNVFTTPWSATVTYRHMTQDQWVENICAENPRKYGTEEDAQVPTAKAPDF*
Ga0126377_113248722	3300010362	Tropical Forest Soil	YLQLYVTVEDEGVFTTPWSATVTYGRPFGEWLENVCAENPRKYGTEKDVQVPTAVKPDF*
Ga0126377_135404571	3300010362	Tropical Forest Soil	RDAKENARNQQAFDPDYRGRVLQLTFTVDDPNVFTTQWSATVTYRHMTQDQWLENVCAENPRKYGTEEDAQVPTAKAPDF*
Ga0134124_122311602	3300010397	Terrestrial Soil	MDPNYRGKYLQLLVTVDDTNVFTTPWSATVTYGRPFGPWLELVCAENPRKYGTERDVQVPAAETPDF*
Ga0134127_105855764	3300010399	Terrestrial Soil	LFTVEDPNVFTTPWSATVTFGKPAVEWVEQVCAENPNKYGTEEDAQVPTATTPDF*
Ga0134123_106041212	3300010403	Terrestrial Soil	PNVFTTPWSATVTYGRSLVEWAENVCAENPNKYGTEKDAQVPTAAKADF*
Ga0134123_109072852	3300010403	Terrestrial Soil	LDRASKENTLPQPAAIDLNYRGKYLQLTFTVDDPNVFTTQWSATVTYGKPAVEWAENICAENPNKYGTEEDAQVPKAASADF*
Ga0134123_125441451	3300010403	Terrestrial Soil	KENFRAQPRNMDWDYRGKHLQLLFTVEDPNVFTTPWSATVTYGKPAVEWVEQVCAENPNKYGTEEDAQVPTATAPDF*
Ga0150983_111025802	3300011120	Forest Soil	FTVEDPNVFTTPWSATETYGKPMVEWAEGVCAENPRKYGTEEDAQVPTAAKPDF*
Ga0150983_158770091	3300011120	Forest Soil	MDPNYRGKYLQLLFTVEDPNVFTTPWSATETYGKPVLDWAEGVCAENPRKYGTEEDAQVPTADKPDF*
Ga0137392_106564962	3300011269	Vadose Zone Soil	TVEDQGVFTTPWSATVTYGRPLGEWLENVCAENPHKYGAEKDAQVPTEDKPDF*
Ga0137393_110730281	3300011271	Vadose Zone Soil	PNVFTTPWSATVTYGKPAVEWVEAVCAENPKKYGTEEDAQVPTANKPDF*
Ga0137389_108269681	3300012096	Vadose Zone Soil	ITVDDSNVFTTPWSTTVTYGKPVLEWAEQVCAENPHKYGTEEDAQVPTAAKPDF*
Ga0137389_110713812	3300012096	Vadose Zone Soil	PLTVDLSYRGKHLQLLITIDDPNVFTTPWSTTVTYGKPVLEWAEQVCAENPHKYGTEEDAQIPTAAKPDF*
Ga0137389_116927581	3300012096	Vadose Zone Soil	QPGNMDANYRGKYLQLRFTVEDPNVFTTPWSATVTYGRPAVEWVEAVCAENPRKYGTEEDAQVPTAAKPDF*
Ga0137349_10450951	3300012160	Soil	IDLDYRGKHLQLTFTVEDPTVFTTPWSATVTYGRPVSEWLENVCAENPFRYGTTPDPEVPIAVTPDF*
Ga0137383_108059481	3300012199	Vadose Zone Soil	GKENSRPVPLTVDLSYRGKHLQNLITVEDPGVFTTPWSATVTYGKPVLPWAENVCAENPHKYGTEEDAQVPTAAKADF*
Ga0137363_104361272	3300012202	Vadose Zone Soil	GVFTMPWSATVTYGKPVLAWAEQVCAENPHKYGTEEDAQIPTAVKPDF*
Ga0137399_103155001	3300012203	Vadose Zone Soil	VLQLLFTVDDPNVFTTPWSATVTYRHMTQDQWPENVCAENPRKYGTEEDAQVPTAMVPDF
Ga0137362_115925392	3300012205	Vadose Zone Soil	DPNVFTTPWSATVTYGKPAVEWVEAVCAENPKKYGTEEDAQVPTANKPDF*
Ga0137380_106604461	3300012206	Vadose Zone Soil	RAAKENARAQAAAVDIDYRGKHLQLTFTVEDEGVFTTPWSATVTFGHPADPWLELVCAENPNKYGTEKDARIPTAAKPDF*
Ga0137380_113910562	3300012206	Vadose Zone Soil	DDPNVFTTPWSTTVTYGKPVLEWAEQVCAENPHKYGTEEDAQVPTAAKPDF*
Ga0137378_104399013	3300012210	Vadose Zone Soil	DPGVFTTPWSATVTYGKPVLPWAENVCAENPHKYGTEEDAQVPTAAKADF*
Ga0137377_105651932	3300012211	Vadose Zone Soil	GLERDGKENARPNPLTVDLSYRGKHLQLLITVEDPGVFTTPWSATVTYGKPVLEWAEQVCAENPHKYGTEEDAQVPTAAKADF*
Ga0137377_106201642	3300012211	Vadose Zone Soil	AAKENARAQAADVDIDYRGKHLQLTFTVEDEGIFTTPWSATVTFVHPADPWLELVCAENPNKYGTEKDARVPTAAKPDF*
Ga0137395_109586021	3300012917	Vadose Zone Soil	DRDAKENFRAQPANMDANYRGKYLQLLFTVEDPNVFTTPWSATVTYGKPAVEWAEAVCAENPKKYGTEEDAQVPTANKPDF*
Ga0137419_109247991	3300012925	Vadose Zone Soil	VDDPNVFTAPWSATVTYRHMTQDQWVENVCAENPHKYGTEEDAQVPTAMVPDF*
Ga0137416_111081651	3300012927	Vadose Zone Soil	SYRGKHLQLLITVEDSNVFTTPWSTTVTYGKPVLEWAEQVCAENPRKYGTEEDAQVPTAAKADF*
Ga0137410_101617475	3300012944	Vadose Zone Soil	FTVEDPNVFTTPWSATVTYGKPAVEWVEAVCAENPRKYGTEEDAQVPTAAKPDF*
Ga0137410_103826691	3300012944	Vadose Zone Soil	VDLNYRGKHLQLTFTVEDESVFTTPWSATVTYGKPVLEWLELACAENPNKYGTEEDAQVPTADKPDF*
Ga0126369_122376253	3300012971	Tropical Forest Soil	YRGKHLQLTFTVDDPTVFTTPWTATVTMGKPVVEWAENVCAENPRKYGTEEDAQVPTAAKPDF*
Ga0126369_123595391	3300012971	Tropical Forest Soil	TVEDPNVFTTPWSATETYGKPVVDWAEGVCAENPRKYGTEEDAQVPTAVKPDF*
Ga0126369_130056712	3300012971	Tropical Forest Soil	VEDPNVFTTPWTSTVTYGKSAVAWAENVCSENPNKYGTEDDAQVPTATKADF*
Ga0164304_103825552	3300012986	Soil	GDFRVNPNDKGKHLQLFFTVEDPAVFTTPWSATVTYGRVNPAPGGLSQISEWEENVCAENPRKYGTEKDAQVPTADKPDF*
Ga0180065_10164232	3300014878	Soil	DYRGKHLQLHFTVEDPNVFTTRWSATVTYGRPRTEWGENVCAENPFRYGTTPDPEVPIAVTPDF*
Ga0157379_121219182	3300014968	Switchgrass Rhizosphere	YRGKHLQLTFTVEDPTVFTTPWTATVTMGKPVVEWAENVCAENPRKYGTEEDAQVPTAAKPDF*
Ga0137418_108748022	3300015241	Vadose Zone Soil	DPNVFTTPWSATVTYGKPAVEWVEAVCAENPNKYGTEEDAKVPTANKPDF*
Ga0137412_107597751	3300015242	Vadose Zone Soil	VFTAPWSATVTYRHMAQDQWLENVCAENPRKYGTEEDAQVPTAKVPDF*
Ga0137409_100496151	3300015245	Vadose Zone Soil	LQLTFTVEDENVFTTPWSATVTYGKPVLEWLELACAENPNKYGTEEDAQVPTADKPDF*
Ga0137409_103292393	3300015245	Vadose Zone Soil	YLQLRFTVEDPNVFTTPWSATVTYGKPAVEWVEAVCAENPNKYGTEEDAKVPTANKPDF*
Ga0137409_104204341	3300015245	Vadose Zone Soil	TVDLDYKGKHLQLKFTVEDPGVFTMPWSATVTYGKPVLAWAEQVCAENPHKYGTEEDAQIPSAVKPDF*
Ga0132258_114228103	3300015371	Arabidopsis Rhizosphere	SGIEPFGMDPTYRGKYLQLLVIVEDEKMFTTPWSATVTYGRPFGPWLEMVCAENPRKYGTERM*
Ga0182041_100495406	3300016294	Soil	TNYRGPQLQLTFTVEDPNVFTTPWSATVTYRRMTQDDWTENVCAENPHKYGTEEDAQVPTAAKPDF
Ga0187825_100601101	3300017930	Freshwater Sediment	KDNVLPRPATVDLNYRGKHLQLIFTVEDSTVFTTPWSATVTYGHPARPISPGLSDWLENVCAENPHKYGTEEDAQVPTASKADF
Ga0184629_101916491	3300018084	Groundwater Sediment	GFARDEKENFRAQPGNMDWNYRGKHLQLLFTVEDPNVFTTPWSATVTYGKPAVEWVEQVCAENPRKYGTEEDAQVPTATTPDF
Ga0180106_11037901	3300019212	Groundwater Sediment	LDRASKENALPQPPTIDLDYKGKHLQLTFTVEDPAVFTTPWSATVTYGRPVGNWLENVCAENPNKYGTERDAQVPTAAKPDF
Ga0180117_10028742	3300019248	Groundwater Sediment	LQLTFTVEDPAVFTTPWSATVTYGRPVGNWLENVCAENPNKYGTERDAQVPTAAKPDF
Ga0184648_10128251	3300019249	Groundwater Sediment	LTFTVDDPSVFTTRWSATVTYGKSVDVWRENVCAENPNKYGTERDAQVPTAAKPDF
Ga0190264_108083741	3300019377	Soil	RGKHLQVQITVEDEGVFTTPWSATVTYGRPIGEWAEHVCAENPNKYGTEEETRAPTANTPDF
Ga0210399_108157882	3300020581	Soil	TVDDPDVFTAPWSATVTYRHMTQDQWLENVCAENPRKYGTEEDAQVPTAKVPDF
Ga0193719_104698661	3300021344	Soil	YRGKHLQLTFTVEDESVFTTPWSATVTYGKPVLEWLELACAENPNKYGTERDTRLPTAAKPDF
Ga0210393_105896421	3300021401	Soil	GPRAPESAIEPYNMDPNYRGRYLQLLFTVEDEGVFTTPWSATVTYGRPLGEWLENVCADNPRKYGTERDAQVPTADKPDF
Ga0210384_109097161	3300021432	Soil	LSYRGKHLQLTFTVEDPNVFTTPWSATVTYGKPAVEWAEQVCAENPNKYGTEENAQVPSAAKPDF
Ga0210384_112870231	3300021432	Soil	NVFTTPWSATETYGKPVFDWAEGVCAENPRKYGTEEDAQVPTAAKPDF
Ga0210410_117683432	3300021479	Soil	EAGIEPFGMDPNYRGKYLQLLVTVEDEGVFTMPWSATITYGRPLGEWLENVCAENPRKYGTEKDVAVPTADTPDF
Ga0242655_100758241	3300022532	Soil	ETGIEPFGMDPNYRGKYLQLQFTVDDEGVFTMPWSATVTYGRPLGEWLENVCAENPRKYGTEKDVAVPTANKPDF
Ga0242657_10361272	3300022722	Soil	TVDLSYRGKHLQLFITVEDPGVFTMPWSATVTYGKPVLAWAENVCAENPHKYGTEEDAQVPTAAKPDF
Ga0242665_100333362	3300022724	Soil	KENALPQPAAVDLSYRGKHLQLTFTVEDPNVFTTPWSATVTYGKPAVEWAEQVCAENPNKYGTEENAQVPSAAKPDF
Ga0247668_10094383	3300024331	Soil	PVLQLLFTVDDPNVFTAPWSATVTYRHMTQDQWLENVCAENPRKYGTEEDAQVPTAKVPD
Ga0179591_11377033	3300024347	Vadose Zone Soil	IPFADDSGLFFDPNYKGKHLQLQFTVEDEGVFTTPWSATVTYGRPAGVWLETVCAENPNKYGTEKDAQVPTADKPDF
Ga0207652_104712572	3300025921	Corn Rhizosphere	GLDRDGKENALPLPAAVDLNYRGKYLQLQFTVEDPNVFTSPWAATVTYGRPVTEWAENVCGENPRKYGTERDTRLPTASMPDF
Ga0207700_106533941	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LPVPVAVDLNYRGKHLQLQFTVEDANVFTTPWTATVTYGRPIVNWVENVCGENPNKYGTERDARLPTADKPDF
Ga0207667_107784363	3300025949	Corn Rhizosphere	PNVFTTPWSATVTYRHMTQDQWLENVCAENPRKYGTEEDAQVPTAEAPDF
Ga0209131_10080614	3300026320	Grasslands Soil	LQLTFTVEDEGVFTTPWSATVTFGHPADPWLELVCAENPNKYGTEKDARVPTADKPDF
Ga0209131_11552822	3300026320	Grasslands Soil	AKEGLERDGRENSRPQPLTVDLNYRGKHLQLLITVEDPGVFTTAWSATVTYGKPVLQWAENVCAENPRKYGTEEDAQIPTADKPDF
Ga0209117_11494751	3300027645	Forest Soil	GKYLQLQFTVDDEGVFTMPWSATVTYGRPLGEWLENVCAENPRKYGTEKDAAVPTADRPD
Ga0209596_11319183	3300027754	Freshwater Lake	TTPWSATVTYRHMIQDQWVENVCAENPRKYGTEEDAQVPTATTPDF
Ga0209074_104563921	3300027787	Agricultural Soil	GKHLQLYFTVDDPNVFTTPWSATVTYGRINPLPGRVSQISEWEENVCAENPLKYGTERDAQVPTAAKADF
Ga0209060_105483462	3300027826	Surface Soil	DLDKNYRGKYLQLWFTVEDKQFFTTPWSATVTYGRPKTEWLENVCAENPFKYGTERDAQVPTAATPDF
Ga0209488_100883501	3300027903	Vadose Zone Soil	PNVFTAPWSATVTYRHMAQDQWLENVCAENPRKYGTEEDAQVPTAKVPDF
Ga0170824_1197065522	3300031231	Forest Soil	VAKENALPQPPAVDLDYHGKHLQLTFTVEDKDVFTTPWSATVTYGKPAVEWAENVCAENPNKYGTEEDVQLPTAAKPDF
Ga0265342_106661542	3300031712	Rhizosphere	LPQPVTVDLKYRGKYLQLQFTVEDKGVFTTPWSATVTYGRPLGDWAENVCGENPHKYGTERDVQLPTAAKADF
Ga0310813_117343561	3300031716	Soil	RRNPNDTGKHLQLYFTVDDPNVFTTPWSATVTYGRINPLPGRVSQISEWEENVCAENPLKYGTERDAQVPTAAKADF
Ga0307468_1017477642	3300031740	Hardwood Forest Soil	RQAGIEPFGMDPDYRGKYLQLLVTVDDDAVFTMPWSATVTYGRPFGEWLENVCAENPKKYGTEKDVQVPTANTPDF
Ga0307473_111471141	3300031820	Hardwood Forest Soil	YRGKHLQLTFTVDDPSVFTTPWSATVTYGKPAVEWAENVCAENPRKYGTEEDAQVPTAGKPDF
Ga0310916_109234351	3300031942	Soil	GKHLQLSFTVEDPNVFTTPWTATVTYGKPAVDWLEQVCAENPKKYGTEEDAQVPTAKRPD
Ga0306924_115458421	3300032076	Soil	QAFDPDYRGPVLQLTFTVDDPNVFTTPWSATVTYRHMTLDQWLENVCAENPRKYGTEEDAQVPTAKAPDF
Ga0307472_1021335431	3300032205	Hardwood Forest Soil	PVPLTVDLSYRGKHLQLFITVEDPAVFTAPWSATVTYGKPVLEWAEQVCAENPHKYGTEEDAQVPTADKPDF
Ga0335077_107391451	3300033158	Soil	YRGKYLQLLYTVEDPNVFTTPWSATVTYGKPAVDWAEQVCAENPHKYGTEEDAQVPTANTPDF
Ga0326726_101676921	3300033433	Peat Soil	DGKENARPQPLTVDLNYRGKHLQLLITVEDPGVFTTPWSATVTYGKPVLEWAENICAENPHKYGTEEDAQVPTAAKPDF
Ga0326723_0390485_16_219	3300034090	Peat Soil	MDSNYRGKYLQLLFTVEDPNVFTTPWSATVTYGKPAVEWLEAVCAENPKKYGTEEDAQVPTANKPDF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081794

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences