Metagenome / Metatranscriptome Family F081788

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F081788
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	67 residues
Representative Sequence	MRDRNNLNRQDTILGGMILGGFVVIAVIAALFTLVSWRGERTADVPKTTVGSSAHAWTPAAPAAPSAN
Number of Associated Samples	95
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.09 %
% of genes near scaffold ends (potentially truncated)	27.19 %
% of genes from short scaffolds (< 2000 bps)	89.47 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (80.702 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.790 % of family members)
Environment Ontology (ENVO)	Unclassified (44.737 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.158 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.75% β-sheet: 0.00% Coil/Unstructured: 56.25%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF11272	DUF3072	25.44
PF06823	DUF1236	1.75
PF03330	DPBB_1	1.75
PF01068	DNA_ligase_A_M	1.75
PF03401	TctC	0.88
PF09939	DUF2171	0.88
PF13545	HTH_Crp_2	0.88
PF07992	Pyr_redox_2	0.88
PF01810	LysE	0.88
PF03033	Glyco_transf_28	0.88
PF05974	DUF892	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.75
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.75
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.88
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.70 %
Unclassified	root	N/A	19.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.70 %
Unclassified	root	N/A	19.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.70 %
Unclassified	root	N/A	19.30 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	74.56 %
Unclassified	root	N/A	19.30 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66.67 %
Unclassified	root	N/A	19.30 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	65.79 %
Unclassified	root	N/A	19.30 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.88 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	60.53 %
Unclassified	root	N/A	19.30 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	47.37 %
Unclassified	root	N/A	19.30 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.30 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	16.67 %
Acinetobacter calcoaceticus/baumannii complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex	0.88 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.30 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	13.16 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2.63 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.88 %
Acinetobacter baumannii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	0.88 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02J2NKE	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	523	Open in IMG/M
2199352025\|deepsgr__Contig_51708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	665	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10590062	Not Available	532	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100764171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	666	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100765643	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300000559\|F14TC_100704912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	533	Open in IMG/M
3300000787\|JGI11643J11755_11845189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	768	Open in IMG/M
3300000789\|JGI1027J11758_13007938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	599	Open in IMG/M
3300005093\|Ga0062594_100016915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2908	Open in IMG/M
3300005093\|Ga0062594_100522486	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300005330\|Ga0070690_101671996	Not Available	517	Open in IMG/M
3300005337\|Ga0070682_101682383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	551	Open in IMG/M
3300005347\|Ga0070668_100006056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8969	Open in IMG/M
3300005347\|Ga0070668_100093935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2367	Open in IMG/M
3300005347\|Ga0070668_101010562	Not Available	748	Open in IMG/M
3300005354\|Ga0070675_100303470	All Organisms → cellular organisms → Bacteria → Proteobacteria	1407	Open in IMG/M
3300005356\|Ga0070674_101225590	Not Available	667	Open in IMG/M
3300005455\|Ga0070663_100354074	All Organisms → cellular organisms → Bacteria → Proteobacteria	1189	Open in IMG/M
3300005456\|Ga0070678_100115360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2108	Open in IMG/M
3300005459\|Ga0068867_101026164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	749	Open in IMG/M
3300005543\|Ga0070672_100564633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	989	Open in IMG/M
3300005548\|Ga0070665_100315700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1567	Open in IMG/M
3300005548\|Ga0070665_102022718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	581	Open in IMG/M
3300005719\|Ga0068861_101842827	Not Available	601	Open in IMG/M
3300005841\|Ga0068863_100516916	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300005844\|Ga0068862_100425007	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300006163\|Ga0070715_10986212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	524	Open in IMG/M
3300006173\|Ga0070716_101792136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	508	Open in IMG/M
3300006177\|Ga0075362_10347164	Not Available	742	Open in IMG/M
3300006195\|Ga0075366_10343851	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300006237\|Ga0097621_102223249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	525	Open in IMG/M
3300006358\|Ga0068871_100285760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1444	Open in IMG/M
3300006844\|Ga0075428_100761760	All Organisms → cellular organisms → Bacteria → Proteobacteria	1030	Open in IMG/M
3300006844\|Ga0075428_101845196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	629	Open in IMG/M
3300009094\|Ga0111539_10236002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2129	Open in IMG/M
3300009098\|Ga0105245_10411665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1353	Open in IMG/M
3300009098\|Ga0105245_11820326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	662	Open in IMG/M
3300009098\|Ga0105245_12351831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586	Open in IMG/M
3300009100\|Ga0075418_11510892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	729	Open in IMG/M
3300009101\|Ga0105247_10379839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1001	Open in IMG/M
3300009174\|Ga0105241_12486551	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300010371\|Ga0134125_11203137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	828	Open in IMG/M
3300010397\|Ga0134124_11199725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	779	Open in IMG/M
3300010400\|Ga0134122_10848972	Not Available	877	Open in IMG/M
3300011119\|Ga0105246_10384453	All Organisms → cellular organisms → Bacteria → Proteobacteria	1161	Open in IMG/M
3300012481\|Ga0157320_1040831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	502	Open in IMG/M
3300012916\|Ga0157310_10115238	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300012941\|Ga0162652_100032220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	791	Open in IMG/M
3300012941\|Ga0162652_100045877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300012987\|Ga0164307_10564732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	871	Open in IMG/M
3300013296\|Ga0157374_10514872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1202	Open in IMG/M
3300013296\|Ga0157374_10702830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1024	Open in IMG/M
3300013296\|Ga0157374_12094533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	592	Open in IMG/M
3300013297\|Ga0157378_10894562	Not Available	918	Open in IMG/M
3300013306\|Ga0163162_11810296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	698	Open in IMG/M
3300013308\|Ga0157375_11524680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	789	Open in IMG/M
3300014325\|Ga0163163_10739810	All Organisms → cellular organisms → Bacteria → Proteobacteria	1047	Open in IMG/M
3300014326\|Ga0157380_10899807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	911	Open in IMG/M
3300014968\|Ga0157379_12385138	Not Available	528	Open in IMG/M
3300014969\|Ga0157376_11622171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	681	Open in IMG/M
3300015077\|Ga0173483_10143033	Not Available	1047	Open in IMG/M
3300015201\|Ga0173478_10760985	Not Available	526	Open in IMG/M
3300015371\|Ga0132258_11765269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1560	Open in IMG/M
3300015371\|Ga0132258_11855136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1518	Open in IMG/M
3300017792\|Ga0163161_10017797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4979	Open in IMG/M
3300017792\|Ga0163161_10883730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	756	Open in IMG/M
3300017965\|Ga0190266_10933205	Not Available	573	Open in IMG/M
3300018028\|Ga0184608_10197198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	881	Open in IMG/M
3300018028\|Ga0184608_10296151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	711	Open in IMG/M
3300018051\|Ga0184620_10227387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	624	Open in IMG/M
3300018051\|Ga0184620_10277115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	564	Open in IMG/M
3300018067\|Ga0184611_1018735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2106	Open in IMG/M
3300018072\|Ga0184635_10144313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	950	Open in IMG/M
3300018073\|Ga0184624_10042760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1805	Open in IMG/M
3300018078\|Ga0184612_10034070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2638	Open in IMG/M
3300018081\|Ga0184625_10068529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1801	Open in IMG/M
3300018083\|Ga0184628_10125982	Not Available	1326	Open in IMG/M
3300018429\|Ga0190272_10717840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	903	Open in IMG/M
3300018469\|Ga0190270_11034822	Not Available	850	Open in IMG/M
3300018476\|Ga0190274_10072811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2604	Open in IMG/M
3300018476\|Ga0190274_10240472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1632	Open in IMG/M
3300018481\|Ga0190271_11122391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	909	Open in IMG/M
3300021415\|Ga0193694_1029051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	774	Open in IMG/M
3300022694\|Ga0222623_10345981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	568	Open in IMG/M
3300022756\|Ga0222622_10358953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1017	Open in IMG/M
3300025315\|Ga0207697_10033669	All Organisms → cellular organisms → Bacteria → Proteobacteria	2097	Open in IMG/M
3300025899\|Ga0207642_10351871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	869	Open in IMG/M
3300025904\|Ga0207647_10213999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1112	Open in IMG/M
3300025923\|Ga0207681_11668566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	533	Open in IMG/M
3300025924\|Ga0207694_11564383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	556	Open in IMG/M
3300025930\|Ga0207701_11540986	Not Available	537	Open in IMG/M
3300025934\|Ga0207686_11520117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	552	Open in IMG/M
3300025936\|Ga0207670_10574831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	923	Open in IMG/M
3300025937\|Ga0207669_11407535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	594	Open in IMG/M
3300025939\|Ga0207665_10035032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3331	Open in IMG/M
3300025972\|Ga0207668_10243538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1456	Open in IMG/M
3300025972\|Ga0207668_11451428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	619	Open in IMG/M
3300025986\|Ga0207658_10186470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1721	Open in IMG/M
3300026067\|Ga0207678_10053960	All Organisms → cellular organisms → Bacteria	3462	Open in IMG/M
3300026075\|Ga0207708_10371376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1178	Open in IMG/M
3300027866\|Ga0209813_10329940	Not Available	599	Open in IMG/M
3300027907\|Ga0207428_10676819	Not Available	739	Open in IMG/M
3300028380\|Ga0268265_11576775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	661	Open in IMG/M
3300028608\|Ga0247819_10530525	Not Available	700	Open in IMG/M
3300028778\|Ga0307288_10167950	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300028794\|Ga0307515_10921281	Not Available	507	Open in IMG/M
3300028876\|Ga0307286_10088390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1080	Open in IMG/M
3300031058\|Ga0308189_10029249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1379	Open in IMG/M
3300031058\|Ga0308189_10356373	Not Available	591	Open in IMG/M
3300031058\|Ga0308189_10363449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	587	Open in IMG/M
3300031082\|Ga0308192_1081518	Not Available	528	Open in IMG/M
3300031091\|Ga0308201_10121651	Not Available	783	Open in IMG/M
3300031740\|Ga0307468_101010358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	733	Open in IMG/M
3300034127\|Ga0370489_0062630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1080	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.88%
Environmental	Environmental	49.12%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.88%
Terrestrial	Environmental → Terrestrial	38.60%
Aquatic	Environmental → Aquatic	10.53%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.16%
Sediment	Environmental → Aquatic → Sediment	10.53%
Roots	Host-Associated → Plants → Roots	6.14%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.42%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.53%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.53%
Loam	Environmental → Terrestrial → Soil → Loam	7.02%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.63%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.63%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.88%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.14%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.63%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.51%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.51%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300034127	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_16	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_01823450	2170459010	Grass Soil	MRIFKKNPNRQDTLFGGLILGGFVVVAIIAALFMLVSWRGKQTADVQNTVGSSPHASTLLAPAAPSAN
deepsgr_00573920	2199352025	Soil	MRIFXXXPNRQDTLFGGLILGGFVVVAIIAALFMLVSWRGEKTADVPKIVRSSPHASTPLAPAAPS
ICChiseqgaiiFebDRAFT_105900622	3300000363	Soil	MRDRSNLNRQDTVLGGMILAGFVMIAAIAAVFTLAPWRGERTADVPKTTVGSAHATKPVAPTAPAAP
INPhiseqgaiiFebDRAFT_1007641711	3300000364	Soil	MCDRKNPNRQDTMLGGLILGGFVVIAIIAALFTLASWHGERTADAPKTTVGSSAHAWTPAAPAAPSAN*
INPhiseqgaiiFebDRAFT_1007656431	3300000364	Soil	MRDRSNLNRQDTVLGGMILAGFVVIAVIAALFTLAPWRGERTIDVPKTTVGSAHVTNPVAPTAPAAPSTN*
F14TC_1007049121	3300000559	Soil	DRNNLNRQDTILGGMILAGFVVIAVIAALFTLAPWRPERTADVPKTTVDSSTHATNPAAPSTN*
JGI11643J11755_118451891	3300000787	Soil	MRDRKNPNWQDTMLGGLILGSFMVIAVIAALFTVASWHGERIADVPKTTVDSSAPAWIPAAPAAPSAN*
JGI1027J11758_130079381	3300000789	Soil	MRDRSNXNRQDTVLGGMILAGFVMIAAIAALFTLAPWRGERTTDVPKTTVGSAHATKPVAPTAPAAPFTN*
Ga0062594_1000169152	3300005093	Soil	MRDRNNPNRQDTILGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN*
Ga0062594_1005224861	3300005093	Soil	DTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAVPLVPPSTN*
Ga0070690_1016719961	3300005330	Switchgrass Rhizosphere	LGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN*
Ga0070682_1016823831	3300005337	Corn Rhizosphere	DTILGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN*
Ga0070668_1000060566	3300005347	Switchgrass Rhizosphere	MRIFKKNPNHQDTLFGGLILGGFVVVAIIAALFMLVSWRGGQTADVPKTTVGSSSNTPTPAAPSAN*
Ga0070668_1000939351	3300005347	Switchgrass Rhizosphere	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFTLAPWRPERTADVPKTTVDSSTHATNPAAPSTN*
Ga0070668_1010105622	3300005347	Switchgrass Rhizosphere	MSDRKNPNRQDTILGGMILAGFLVIAVIAALFTLASWHGERIADVAKTTVGSSTQASAPAEPAAPAAPSTH*
Ga0070675_1003034703	3300005354	Miscanthus Rhizosphere	MSDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN*
Ga0070674_1012255901	3300005356	Miscanthus Rhizosphere	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFMLAPWRRERTADVPKTTVGSSTHATSPAAPAAPAAPSTN*
Ga0070663_1003540742	3300005455	Corn Rhizosphere	MRDRSNLNRQDTVLGGMILAGFVMIAAIAAVFTLAPWRGERTTDVPKTTVGSAHATKPVAPTAPAAPFTN*
Ga0070678_1001153606	3300005456	Miscanthus Rhizosphere	MSDRNNLNWQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN*
Ga0068867_1010261642	3300005459	Miscanthus Rhizosphere	MHNRNNPDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAVPLVPPSTN*
Ga0070672_1005646331	3300005543	Miscanthus Rhizosphere	MRDRNNPNRQDTILGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPAS
Ga0070665_1003157001	3300005548	Switchgrass Rhizosphere	MRIFRKNPNRQDTLFGGLILGGFVVVALIAALFTVVSWRGETADVPKTVGSSPHAS
Ga0070665_1020227182	3300005548	Switchgrass Rhizosphere	MRIFKNSNRQDTLFGGLILGGFVVVAIIAALFMLVSWRGEQTANVPKKVGSSPHASTPLAPAAPSAN*
Ga0068861_1018428271	3300005719	Switchgrass Rhizosphere	MSDRKNPNRQDTILGGMILAGFVVIAVIAALFTLASWHGERIADVPKTTVGSSTQASAPAEPAAPAAPSTN*
Ga0068863_1005169162	3300005841	Switchgrass Rhizosphere	MRIFRKNPNRQDTLFGGLILGGFVVVALIAALFTVVSWRGETADVPKTMGSSPHASTPLASPTPSAN*
Ga0068862_1004250072	3300005844	Switchgrass Rhizosphere	MRDRNNLNRQDTILGGMILAGFVVIAVIAVLFTLAPWRPERTADVPKTTVDSSTHATNPAAPSTN*
Ga0070715_109862121	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRDRKNPNWQDTMLGGLILGGFVVIAVIAALFTLASWRGERTADVPKTTVGSSTHASIPAAPAAPAAPFAN*
Ga0070716_1017921362	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRDRKNPNWQDTMLGGLILGGFVVIAVIAALFTVASWHGERIADVPKTTLDSSAHAWIPAAPAAPAA
Ga0075362_103471642	3300006177	Populus Endosphere	MGEKRNLNRQDTILGGTILGGFVVIAVIAVLFTLASWRGEQTAEMPNTTAGSSTHASTPALPAAPAAPSAN*
Ga0075366_103438512	3300006195	Populus Endosphere	MRIFRKNPNRQDTLFGGLILGGFVVVALIAALFTVVSWRGETADVPKTVGSSPHASTPLASPTPSAN*
Ga0097621_1022232491	3300006237	Miscanthus Rhizosphere	GMHNRNNPDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAVPLVPPSTN*
Ga0068871_1002857601	3300006358	Miscanthus Rhizosphere	MRDRNNPNRQDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAVPL
Ga0075428_1007617602	3300006844	Populus Rhizosphere	MRDRSNLNEDTVLGGMILAGFVMIAAIAAVFTLAPWRGERTTDVPKTTVGSAHATKPVAPTAPAAPFTN*
Ga0075428_1018451962	3300006844	Populus Rhizosphere	MRTFKKNPNRQDTLFGGLILGGFVVVAVIAAVFMLVSWRGEQTADVTKTVGSSPHASTALAPDAN*
Ga0111539_102360022	3300009094	Populus Rhizosphere	MGEKRNLNRQDTILGGTILGGFVVIAVIAVLFTLASWRGEQTAEMPNTTVGSSTHASTPALPAAPAAPSAN*
Ga0105245_104116651	3300009098	Miscanthus Rhizosphere	MRIFKKNPNHQDTLFGGLILGGFVVVAIIAALFMLVSWRGEQTANVPKKVGSSPHASTPLAPAAPSAN*
Ga0105245_118203261	3300009098	Miscanthus Rhizosphere	NNPDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAVPLVPPSTN*
Ga0105245_123518312	3300009098	Miscanthus Rhizosphere	MSDRKDPNRQDTILGGMILAGFLVIAVIAALFTLASWHGERIADVAKTTVGSSTQASAPAEPAAPAAPSTH*
Ga0075418_115108921	3300009100	Populus Rhizosphere	MRTFKKNPNRQDTLFGGLILGGFVVVAVIAAVFMLVSWRGEQTADVTKTVGSSPHASTALAPAAN*
Ga0105247_103798393	3300009101	Switchgrass Rhizosphere	MRDRKNPNWQDTMLGGLILGGFVVIAVIAALFTVASWHGERITDVPTTTVYSSAHAWIPAAPAALSAN*
Ga0105241_124865511	3300009174	Corn Rhizosphere	IFKKNPNRQDTLFGGLILGGFVVVAIIAALFTLVSWRGERTSDVPKTTVGSSPHALTPLAPAAPSAN*
Ga0134125_112031373	3300010371	Terrestrial Soil	GLILGGFVVVAIIAALFMLVSWRGEQTANVPKKVGSSPHASTPLAPAAPSAN*
Ga0134124_111997251	3300010397	Terrestrial Soil	MRIFKKNPNHQDTLFGGLILGGFVVVAIIAALFMLVSWRGGQTADVPKTTVGSSSNTPAPAAPSAN*
Ga0134122_108489721	3300010400	Terrestrial Soil	MQNRKNLNRQDTILGGMILAGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN*
Ga0105246_103844531	3300011119	Miscanthus Rhizosphere	MRDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN*
Ga0157320_10408311	3300012481	Arabidopsis Rhizosphere	MRDRKNPNRQDTMLGGMILGGFVVIAVIAALFTLASWRDEQTANVPKTVGSSAHAWTP
Ga0157310_101152382	3300012916	Soil	MRDRNNLNRQDTILGGIILAGFVVIAVIAAIVTSVSWRGEQTAEVPKASVGSFTHALSPAAPATPSAN*
Ga0162652_1000322201	3300012941	Soil	MRERNRQDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAAPLVPPSTN*
Ga0162652_1000458772	3300012941	Soil	MRDRSNLNRQDTVLGGMILAGFVVIAVIAALFTLAPWRGERTIDVPKTTVGSAHVTNPVAPTAPAARW
Ga0164307_105647321	3300012987	Soil	MRIFKKNPNRQDTLFGGLILGGFVVVAIIAALFTLVSWRGERTSDVPKTTVGSSPHALTPLAPAAPSAN*
Ga0157374_105148721	3300013296	Miscanthus Rhizosphere	MRDRSNLNRQDTVLGGMILAGFVMIAAIAAVFTLAPWRGERTTDVPKTTVGSAHATKPVA
Ga0157374_107028301	3300013296	Miscanthus Rhizosphere	MRDRNNPNRQDTILGGMILAGFVVIAVIAALVTVASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN*
Ga0157374_120945331	3300013296	Miscanthus Rhizosphere	MRIFRKNPNRQDILFGGLILGGFVVVAIIAALFMLVSWRGEQTANVPKKVGSSPHASTPLAPA
Ga0157378_108945621	3300013297	Miscanthus Rhizosphere	MRDRSNLNRQDTVLGGMILAGFVMIAVIAALFTLAPWRGERTTDLPKMTVGSAHATKPFAPTAPAAPFTN*
Ga0163162_118102962	3300013306	Switchgrass Rhizosphere	MRDRKNPNRLDTILGGLILGGLAVIAVIGALFTLASWRVERTADVPKTTVGSSAHAWTPVSPAAASSN*
Ga0157375_115246801	3300013308	Miscanthus Rhizosphere	MHNRNNPDTVLGGMIIGGFVVIAVIAALFTLASWRSERTADAPKTTVGSSSHALRSAAPLAPLSTN*
Ga0163163_107398103	3300014325	Switchgrass Rhizosphere	MRDRNNLNRQDTILGGIILAGFVVIAVIAALVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN*
Ga0157380_108998071	3300014326	Switchgrass Rhizosphere	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFMLAPWRRERTADVPKTTVGSSTHATSPAAPAATAAPSTN*
Ga0157379_123851381	3300014968	Switchgrass Rhizosphere	MRDRKNPNRQDTILGGMILAGFLVIAVIAALFTLASWHGERIADVPTTTVDSSAHAWNPAPAAPLAN*
Ga0157376_116221711	3300014969	Miscanthus Rhizosphere	MRIFKKNPNHQDTLFGGLILGGFVVVAIIAALFILVSWRGGQTADVPKTTVGSSSNTPTPAAPSAN*
Ga0173483_101430331	3300015077	Soil	MRDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSFTHALSPAAPATPSAN*
Ga0173478_107609851	3300015201	Soil	MSDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALNPAAPATPSAN*
Ga0132258_117652692	3300015371	Arabidopsis Rhizosphere	MHNRNNPDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAAPLVPPSTN*
Ga0132258_118551362	3300015371	Arabidopsis Rhizosphere	MGEQRNLNRQDTILGGTILGGFVVIAVIAVLFTWASWRGERTAEMPNTTVGSSTHASTPALPAAPAAPSAN*
Ga0163161_100177971	3300017792	Switchgrass Rhizosphere	LGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAVPLVPPSTN
Ga0163161_108837301	3300017792	Switchgrass Rhizosphere	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFMLAPWRRERTADVPKTTVGSSTHATSPAAPAAPAAPSTN
Ga0190266_109332051	3300017965	Soil	DRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN
Ga0184608_101971981	3300018028	Groundwater Sediment	FCVSVLLLAKGKGGMRERNNLNRQDTILGGMILGGFVVVAVIAALFTLASWRGERTADLPKATVGSSAHAWTPAAPAAPSAN
Ga0184608_102961512	3300018028	Groundwater Sediment	MRDRNNLNRQDTTLGGMILAGFVVIAVIAALFALAPWRGERTTDVPKTTVGSSTHVTNPAAPAAPAAPSTN
Ga0184620_102273871	3300018051	Groundwater Sediment	MRERNNSNRQDTILGGMILGGFVVIAVIAALFTLVSWRGERTADVPKTTVGSSAHAWTPAAPAAPSAN
Ga0184620_102771152	3300018051	Groundwater Sediment	MRIFKKNPNRQDTLFGGLILGGFVVVAIIAALFMLVSWRGGQTADVPKTTVGSSSNTPTPAAPSAN
Ga0184611_10187354	3300018067	Groundwater Sediment	MSDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN
Ga0184635_101443131	3300018072	Groundwater Sediment	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFTLAPWRGERTTDVPKTTVGSSTHVTNPAAPAAPAAPSTN
Ga0184624_100427602	3300018073	Groundwater Sediment	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFALAPWRGERTTDVPKTTVGSSTHATNPAVPAAPAAPSTN
Ga0184612_100340705	3300018078	Groundwater Sediment	MRERNRQDTILGGVILGGFVVIAVIAALFTLASWRGERTADVPKTTVGSSTHASTPAAPAAPVAAPSAN
Ga0184625_100685292	3300018081	Groundwater Sediment	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFTLAPWRGERTTDVPKTTVGSSTHVMNPAAPAAPAAPSTN
Ga0184628_101259823	3300018083	Groundwater Sediment	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFTLAPWRGERTTDVPETTVGSSTHATNPAAPAAPSTN
Ga0190272_107178403	3300018429	Soil	MRIFKKNPNRQDTLFGGLILGGFVVVAIIAAMFMLVSWRGEQTADVPKTVGSSPHASTPLAPAAPSN
Ga0190270_110348221	3300018469	Soil	MRDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN
Ga0190274_100728112	3300018476	Soil	MRIFKNPNRQDTLFGGLILGGFVVVAVIAGLFTLESWRGERTADVPKTTVDSSPHASTPLAPAAPSAN
Ga0190274_102404721	3300018476	Soil	MRDRNNLNRQDTILGGMILAGFVVIAVLAALFTLAPWRRERTADVPKTTVGSSTHATNPAAPPAPAAPSTN
Ga0190271_111223911	3300018481	Soil	MRIFKNPNRQDTLFGGLILGGFVVVAIIAALFMLVSWRGERTADLPTTTVGSSTPAPP
Ga0193694_10290512	3300021415	Soil	MRIFKKNPNHQDTLFGGLILGGFVVVAIIAALFMLVSWRGGQTADVPKTTVGSSPHASTPLAPAAPSAN
Ga0222623_103459811	3300022694	Groundwater Sediment	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFALAPWRGERTTDVPKTTVGSSTHVTNPAAPAAPAAPSTN
Ga0222622_103589532	3300022756	Groundwater Sediment	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFTLAPWRRERTADVPKTTVGSSTHATNPAAPAAPAAPSTN
Ga0207697_100336692	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRRTNNPNRQDTLLGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN
Ga0207642_103518711	3300025899	Miscanthus Rhizosphere	MRDRNNPNRQDTILGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAP
Ga0207647_102139991	3300025904	Corn Rhizosphere	MRDRKNPNWQDTMLGGLILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN
Ga0207681_116685662	3300025923	Switchgrass Rhizosphere	MRIFKKNPNHQDTLFGGLILGGFVVVAIIAALFMLVSWRGGQTADVPKTTVGSSSNTPTPAAPSAN
Ga0207694_115643831	3300025924	Corn Rhizosphere	MRDRNNPNRQDTILGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN
Ga0207701_115409861	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	NRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSA
Ga0207686_115201171	3300025934	Miscanthus Rhizosphere	MSDRKNPNRQDTILGGMILAGFLVIAVIAALFTLASWHGERIADVPKTTVGSSTHATSPAAPAAPAAPSTH
Ga0207670_105748311	3300025936	Switchgrass Rhizosphere	MRDRNNPNRQDTILGGMILAGFLVIAVIAALFTLASWHGERIPDVAKTTVGSSTQASAPAEPAAPAAPSTH
Ga0207669_114075351	3300025937	Miscanthus Rhizosphere	MRDRKNPNRLDTILGGLILGGLAVIAVIGALFTLASWRVERTADVPKTTVGSSAHAWTPVSPAAASSN
Ga0207665_100350321	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRDRKNPNWQDTMLGGLILGGFVVIAVIAALFTVASWHGERIADVPKTTLDSSAHAWIPAAPAAPAALR
Ga0207668_102435384	3300025972	Switchgrass Rhizosphere	MHNRNNPDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAVPLVPPSTN
Ga0207668_114514282	3300025972	Switchgrass Rhizosphere	MRIFRKNPNRQDTLFGGLILGGFVVVALIAALFTVVSWRGETADVPKTVGSSPHASTPLASPTPSAN
Ga0207658_101864702	3300025986	Switchgrass Rhizosphere	MSDRKNPNRQDTILGGMILGGFVVIAVIAALFTLASWLNERTADVPKTTVGSSAHAWTAAAPASPSAN
Ga0207678_100539605	3300026067	Corn Rhizosphere	MSDRNNLNRQDTILGGIILAGFVVIAVMAAIVTLVSWRGEQTAEVPKATVGSSTHASRPTPHFTN
Ga0207708_103713762	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRDRNNPNRQDTILGGMILGGFVVIAVIAALFTLASWLNERTADVPKTVGSSPHASTPLAPAAPSAN
Ga0209813_103299401	3300027866	Populus Endosphere	MRDRSNLNRQDTVLGGMILAGFVMIAAIAAVFTLAPWRGERTTDVPKTTVGSAHATKPVAPTAPAAPFTN
Ga0207428_106768191	3300027907	Populus Rhizosphere	MGEKRNLNRQDTILGGTILGGFVVIAVIAVLFTLASWRGEQTAEMPNTTVGSSTHASTPALPAAPAAPSAN
Ga0268265_115767752	3300028380	Switchgrass Rhizosphere	MRDRNNLNRQDTILGGMILAGFVVIAVIAALFTLAPWRPERTADVPKTTVDSSTHATNPAAPSTN
Ga0247819_105305251	3300028608	Soil	RDSNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEPTAEVSKATVGSSTHALSPAAPATPSAN
Ga0307288_101679503	3300028778	Soil	MRDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATP
Ga0307515_109212811	3300028794	Ectomycorrhiza	MRDRNNLNRQDTILGGMILAVFVVIAVIAALFTLAPWRRERTADVPKTTVGSSTHATNPAAPA
Ga0307286_100883903	3300028876	Soil	MRIFKKNPNRQDTLFGGLILGGFVVVAIIAALFMLVSWRGEKTADVPKIVRSSPHASTPLAPAAPSAN
Ga0308189_100292491	3300031058	Soil	MRDRNNLNRQDTILGGMILGGFVVIAVIAALFTLVSWRGERTADVPKTTVGSSAHAWTPAAPAAPSAN
Ga0308189_103563731	3300031058	Soil	RNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN
Ga0308189_103634492	3300031058	Soil	MRIFKKNPNRQDTLFGGLILGGFVVVAIIAALFMLVSWRGGQTADVPKTTVGSSPHASTPLAPAAPSAN
Ga0308192_10815181	3300031082	Soil	RNNLNRQDTILGGIILAGFVVIAVIAALVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN
Ga0308201_101216512	3300031091	Soil	GMRDRNNLNRQDTILGGIILAGFVVIAVIAAIVTLVSWRGEQTAEVPKATVGSSTHALSPAAPATPSAN
Ga0307468_1010103582	3300031740	Hardwood Forest Soil	MRDRKNPNRQDTILGGMILGGFVVIAVLAALFTLASWRNERTADAPKTTVGSSSHASRPAAPLVPPSTN
Ga0370489_0062630_759_965	3300034127	Untreated Peat Soil	MRIFNKNPNRQDTLLGGLILGGFMVVAVIAAVFMLFSWRVEQTVDVPKTVGPSPHSSTPLSPTAPSAN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081788

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences