Metagenome Family F081725

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081725
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	65 residues
Representative Sequence	MDPQEAIFGRMTVRRALALLACAALLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLDL
Number of Associated Samples	88
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.09 %
% of genes near scaffold ends (potentially truncated)	78.95 %
% of genes from short scaffolds (< 2000 bps)	73.68 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (78.947 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (50.877 % of family members)
Environment Ontology (ENVO)	Unclassified (49.123 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.877 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1JGI25387J43893_10172193 2JGI25389J43894_11078101 3Ga0066684_108606283 4Ga0066681_100296921 5Ga0066701_107580381 6Ga0066661_105670482 7Ga0066704_102773983 8Ga0066698_109464102 9Ga0066670_106081151 10Ga0066699_106136072 11Ga0066654_101994353 12Ga0066656_109827942 13Ga0075030_1008960201 14Ga0075018_100534601 15Ga0066665_114968632 16Ga0066660_114387212 17Ga0099794_107909082 18Ga0099829_104014993 19Ga0099828_103674451 20Ga0099828_106121543 21Ga0099828_114814032 22Ga0116220_105441561 23Ga0134064_100685641 24Ga0134071_102090682 25Ga0126379_110816761 26Ga0137392_112356641 27Ga0137392_113652402 28Ga0137391_103179012 29Ga0137391_109300382 30Ga0137393_113559421 31Ga0137389_117419302 32Ga0137388_109952652 33Ga0137363_102842423 34Ga0137363_116837562 35Ga0137362_101586993 36Ga0137362_103159022 37Ga0137362_107255651 38Ga0137386_106895641 39Ga0137360_110473541 40Ga0137361_100568131 41Ga0137390_102641791 42Ga0137390_117969791 43Ga0137358_108549831 44Ga0137397_102311151 45Ga0137397_112779621 46Ga0137395_100042531 47Ga0137395_106428121 48Ga0137396_107440953 49Ga0137396_112756102 50Ga0137394_102422931 51Ga0137394_111229961 52Ga0137394_111995291 53Ga0137394_112534221 54Ga0137419_101167194 55Ga0137419_106120871 56Ga0137419_106729311 57Ga0137419_107220682 58Ga0137419_118636781 59Ga0137404_105308133 60Ga0137404_115813182 61Ga0137407_117761381 62Ga0137407_120803681 63Ga0134078_104982171 64Ga0134078_105585332 65Ga0137420_12690392 66Ga0137418_102770561 67Ga0137412_106079781 68Ga0137409_113368281 69Ga0137403_105751553 70Ga0187814_103705562 71Ga0187805_100159491 72Ga0066669_116685652 73Ga0179590_11302221 74Ga0179594_100697011 75Ga0179594_102050252 76Ga0179594_102818591 77Ga0179594_103907691 78Ga0179592_100026888 79Ga0210407_111447851 80Ga0210406_103472541 81Ga0210400_105726541 82Ga0210405_111924382 83Ga0210386_107854911 84Ga0210409_111032901 85Ga0179589_102669091 86Ga0209350_11423282 87Ga0209267_11505091 88Ga0257157_10227603 89Ga0257158_10721712 90Ga0209806_10453801 91Ga0209056_1001127110 92Ga0209376_11645302 93Ga0209156_102791011 94Ga0209161_101466451 95Ga0179587_111661582 96Ga0208981_11973802 97Ga0209588_11829323 98Ga0209118_10061671 99Ga0209283_103428423 100Ga0209283_104775793 101Ga0209068_102877673 102Ga0209067_108444371 103Ga0310037_104378182 104Ga0170834_1005305692 105Ga0318541_102667451 106Ga0307469_102215282 107Ga0307477_108871251 108Ga0307475_100985341 109Ga0307475_112976801 110Ga0307473_113103442 111Ga0307479_100524081 112Ga0318569_102444702 113Ga0318533_101021561 114Ga0316212_10292152
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 1JGI25387J43893_10172193 2Ga0066684_108606283 3Ga0066681_100296921 4Ga0066661_105670482 5Ga0066656_109827942 6Ga0075030_1008960201 7Ga0075018_100534601 8Ga0066660_114387212 9Ga0099829_104014993 10Ga0099828_103674451 11Ga0099828_106121543 12Ga0099828_114814032 13Ga0116220_105441561 14Ga0126379_110816761 15Ga0137391_103179012 16Ga0137363_102842423 17Ga0137360_110473541 18Ga0137395_106428121 19Ga0137396_112756102 20Ga0137394_111995291 21Ga0137394_112534221 22Ga0137419_101167194 23Ga0137419_107220682 24Ga0187814_103705562 25Ga0187805_100159491 26Ga0179592_100026888 27Ga0210406_103472541 28Ga0210409_111032901 29Ga0209350_11423282 30Ga0179587_111661582 31Ga0209588_11829323 32Ga0318541_102667451 33Ga0307477_108871251 34Ga0316212_10292152
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1Ga0137392_112356641 2JGI25387J43893_10172193 3Ga0066684_108606283 4Ga0066701_107580381 5Ga0066656_109827942 6Ga0075030_1008960201 7Ga0075018_100534601 8Ga0066660_114387212 9Ga0099829_104014993 10Ga0099828_114814032 11Ga0116220_105441561 12Ga0126379_110816761 13Ga0137391_103179012 14Ga0137393_113559421 15Ga0137386_106895641 16Ga0137390_102641791 17Ga0137395_106428121 18Ga0137396_107440953 19Ga0137396_112756102 20Ga0137394_111229961 21Ga0137394_111995291 22Ga0137419_101167194 23Ga0137419_107220682 24Ga0137404_115813182 25Ga0137407_117761381 26Ga0137418_102770561 27Ga0137409_113368281 28Ga0187814_103705562 29Ga0187805_100159491 30Ga0179594_100697011 31Ga0179594_102050252 32Ga0210407_111447851 33Ga0210406_103472541 34Ga0210405_111924382 35Ga0210409_111032901 36Ga0209350_11423282 37Ga0257158_10721712 38Ga0179587_111661582 39Ga0208981_11973802 40Ga0209588_11829323 41Ga0209118_10061671 42Ga0209068_102877673 43Ga0209067_108444371 44Ga0310037_104378182 45Ga0170834_1005305692 46Ga0307475_100985341 47Ga0307475_112976801 48Ga0307473_113103442 49Ga0318569_102444702 50Ga0316212_10292152
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.52% β-sheet: 0.00% Coil/Unstructured: 43.48%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF02583	Trns_repr_metal	13.16
PF01297	ZnuA	2.63
PF12867	DinB_2	2.63
PF00702	Hydrolase	1.75
PF12704	MacB_PCD	1.75
PF07883	Cupin_2	0.88
PF13620	CarboxypepD_reg	0.88
PF00873	ACR_tran	0.88
PF00122	E1-E2_ATPase	0.88
PF02321	OEP	0.88

Showing 1 to 10 of 10 entries

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COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	13.16
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.75
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.88
COG2216	K+ transport ATPase, ATPase subunit KdpB	Inorganic ion transport and metabolism [P]	0.88
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.95 %
Unclassified	root	N/A	21.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.95 %
Unclassified	root	N/A	21.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.95 %
Unclassified	root	N/A	21.05 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.02 %
Unclassified	root	N/A	21.05 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.51 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	6.14 %
Unclassified	root	N/A	21.05 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.63 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6.14 %
Unclassified	root	N/A	21.05 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2.63 %
Unclassified	root	N/A	21.05 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	6.14 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2.63 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.14 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.88 %
Unclassified	root	N/A	21.05 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2.63 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.14 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.88 %
Unclassified	root	N/A	21.05 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002915\|JGI25387J43893_1017219	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	992	Open in IMG/M
3300002916\|JGI25389J43894_1107810	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300005179\|Ga0066684_10860628	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300005451\|Ga0066681_10029692	All Organisms → cellular organisms → Bacteria → Acidobacteria	2875	Open in IMG/M
3300005552\|Ga0066701_10758038	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300005554\|Ga0066661_10567048	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300005557\|Ga0066704_10277398	All Organisms → cellular organisms → Bacteria → Acidobacteria	1136	Open in IMG/M
3300005558\|Ga0066698_10946410	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300005560\|Ga0066670_10608115	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300005561\|Ga0066699_10613607	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M

Showing 1 to 10 of 94 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.12%
Host-Associated	Host-Associated	0.88%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.26%
Plants	Host-Associated → Plants	0.88%
Terrestrial	Environmental → Terrestrial	93.86%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	1.75%
Roots	Host-Associated → Plants → Roots	0.88%
Sediment	Environmental → Aquatic → Sediment	3.51%
Soil	Environmental → Terrestrial → Soil	93.86%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	1.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.30%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.51%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.51%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.75%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	50.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.51%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M

Showing 1 to 10 of 88 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25387J43893_10172193	3300002915	Grasslands Soil	MHWGISIFRGTIGRRAVALLASVALLYFAVGGSLVHQHTNGPDAACHLCQVLHMPALAATRVDLASTPQT
JGI25389J43894_11078101	3300002916	Grasslands Soil	MHWGISIFRGTIGRRAVALLASVALLYFAVGGSLVHQHTNGPDAACHLCQVLHMPALAATRVDLASTPQTVTLFSSRPQ
Ga0066684_108606283	3300005179	Soil	MHGEIRIFRGTVVRRALALVACSALLYFALGATLPHGHAQGPDNACHVCQALHMPALAAARLDLSSTPQ
Ga0066681_100296921	3300005451	Soil	MYLREAIFGRTVVRRALALLASVALLYFAAGGSLFHQHTGGPDTACHICQV
Ga0066701_107580381	3300005552	Soil	MHWGIRIFGGTAVRRALALVACSALLYFALGASLPHGHAQGPDNACHICQALHIPTLAAARLDLSSTP
Ga0066661_105670482	3300005554	Soil	VRRALALVACSALLYFALGASLPHGHAQGPDNACHVCQALHMPALAAARLDLSTTPQVVTWYSSA
Ga0066704_102773983	3300005557	Soil	MHGEIRIFRGTVVRRALALVACSALLYFALGASLPHGHAQGPDNACHVCQALHMPALAAARLDLSSTPQIVTWYSSAPQH
Ga0066698_109464102	3300005558	Soil	MHWWISIFGGTRRAVPLLASVALLYFAAGGALVHQHTNGPDAACHLCQVLHMPALAATRV
Ga0066670_106081151	3300005560	Soil	MHGGIRIFGGTIVRRALALIACSALLYFALGATLPHGHAQGPDNACHVCQALHMPALAAARLDLSSTPQIVTWYSSAPQH
Ga0066699_106136072	3300005561	Soil	MHWWISIFGGTRRAVPLLASVALLYFAAGGSLVHQHTNGPDAACHLCQVLHMPALAATRVDLASTPQTVTLFS
Ga0066654_101994353	3300005587	Soil	MYLREAIFGRTVVRRALALLASVALLYFAAGGSLFHQHTGGPDTACHICQVLHMPALAAA
Ga0066656_109827942	3300006034	Soil	MYWQKAIFGRTIVRRALAVLAFAALLYFAVGATLPHAHTQGPDNACHICQALHMPGAGCCPA*
Ga0075030_1008960201	3300006162	Watersheds	MHPREAIFGRTNARRTLALLACAALLFFAAGGSLFHQHTNGPDNACHICQAMHMPALAAARLDFG
Ga0075018_100534601	3300006172	Watersheds	MFGRTFVHRGLALLACAALLYFALGGSFLHEHTKGPDAACHICQALHMPTLVSARLDLVAAPEIVTWNFS
Ga0066665_114968632	3300006796	Soil	MHGEIRIFRGTVVRRALALVACSALLYFALGATLPHGHAQGPDNACHVCQALHMPALAAARLDLSSTPQIVTWYSSAPQH
Ga0066660_114387212	3300006800	Soil	MNWGKPNFGHAVVRRGLAVLGCATLLYFAIGAMLPHQHAPGPDAACHVCQALHTPALAAARLDLGSTPEFITRYSSLP
Ga0099794_107909082	3300007265	Vadose Zone Soil	MHWGVSIFGRTVVRHALALLACAALLYFAAGGSLFHEHTNGPDTACHICQALHMPALAAARLD
Ga0099829_104014993	3300009038	Vadose Zone Soil	MHWRVSIFGRTVARRALALFACAALFFFAAGGSLFHQHAHGLDTACHICQAL
Ga0099828_103674451	3300009089	Vadose Zone Soil	MSSQGTIFGRTVVRHALALLACAALLYFAAGGSLFHEHTNGPDTACHICQALHIPALAAARLDLISTPQIVTWYS
Ga0099828_106121543	3300009089	Vadose Zone Soil	MVPQEAIFGRTVARHALALVACAALLYFAAGGSLFHQHTNGSENACHICQAL
Ga0099828_114814032	3300009089	Vadose Zone Soil	MHWGISIFGGTLARRVMALLACVALLYFAAGGSLFHQHTNGPDTACHICQVLHMPALAAARLDLVSTPQIVTWYSSLPRSA
Ga0116220_105441561	3300009525	Peatlands Soil	MLSGGTIFGRTALHRTLAVLACAALLYFAAAGSFLPEHTNTNGPDTACHICQALHMPALVAAHLDLVSAPQIITRYSSLPQHIT
Ga0134064_100685641	3300010325	Grasslands Soil	MHPREAIFGRTVVRRALALLASVALLYFAAGGSLFHQHTGGPDTACHICQVLHMPALAAARLDLVSTPQII
Ga0134071_102090682	3300010336	Grasslands Soil	MYWQKAIFGRTIVRRALAVLACAALLYFAVGATLPHAHTQGPDNACHICQALHMPGAGCCPA*
Ga0126379_110816761	3300010366	Tropical Forest Soil	MHSGSTIFVRGSRRAAALIACVALLYFAAGGSLFHLHNSGPDTACHVCQALHLPALAQAPLDPLAAPEFLAWHSS
Ga0137392_112356641	3300011269	Vadose Zone Soil	MDPQEAIFGRMTVRRALALLACAALLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLDL
Ga0137392_113652402	3300011269	Vadose Zone Soil	MDPQEATFGRTVVRRGLALLACAALLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLDL
Ga0137391_103179012	3300011270	Vadose Zone Soil	MDLRGTIFGGSKVRRALALVACVALLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLDLAGTL
Ga0137391_109300382	3300011270	Vadose Zone Soil	MDLWGTIFGRSKVRRALALVACAALVYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLDLAGTL
Ga0137393_113559421	3300011271	Vadose Zone Soil	MDPQEATFGRTVVRRGLALLACAALLYFVAGGSLFHHHTNGSENACHICQALHMPALAAARLDLVGTPQIVTWYSS
Ga0137389_117419302	3300012096	Vadose Zone Soil	MHPQEGIFGRTVTRRALALLACAALLYFAAGGSLFHEHTNGPDTACHMCQALHMPALAAARLDLVSKPQIVTWYCSLP
Ga0137388_109952652	3300012189	Vadose Zone Soil	MDLRGTIFGRSMVRRALALVACAALLYFAAGGSLFHQHTNGSENACHICQALHMPALAAARLDLAGTLQIVTRFSSLPQH
Ga0137363_102842423	3300012202	Vadose Zone Soil	MHTGETIFGRSTAQRALAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLAAAPLDLVSTPEFV
Ga0137363_116837562	3300012202	Vadose Zone Soil	MDPQEATFGRTVVRRGLALLACAALLYFAAGGSLFHQHTNGPDTACHICQALHMPALA
Ga0137362_101586993	3300012205	Vadose Zone Soil	MYLQKAIFGRTVTRRALGLLACVALLYFAAGGSLVHEHTNGPDTACHVCQALHMPALAAARLDLVSTPEIVTWY
Ga0137362_103159022	3300012205	Vadose Zone Soil	MHSENTIFGRSTAQRTLAILACVALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLTAAPLDLVS
Ga0137362_107255651	3300012205	Vadose Zone Soil	MHWENTIFRRSTAQRALAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLTA
Ga0137386_106895641	3300012351	Vadose Zone Soil	MHWGVSIFGGTVGRRALALLACAALLYFAAGGSLFHQHTNGSDTACHVCQALHMPALEAARLDLASTPQIVI
Ga0137360_110473541	3300012361	Vadose Zone Soil	MRREISIFGGTTARRSMALLACVALLYFAAGGSLFHQHTNGPDTACHICQ
Ga0137361_100568131	3300012362	Vadose Zone Soil	MRREISIFGGTTARRSMALLACVALLYFAAGGSLFHQHTNGPDTACHICQALHMPALA
Ga0137390_102641791	3300012363	Vadose Zone Soil	MSSQGTIFGRTVVRHALALLACAALLYFAAGGSLFHEHTNGPDTACHICQALHMPALAAARLDL
Ga0137390_117969791	3300012363	Vadose Zone Soil	MDPQEATFGRTVVRRGLALLACAALLYFAAGGSLFHQHTNGPDTACHICQALHMPAL
Ga0137358_108549831	3300012582	Vadose Zone Soil	MHSENTIFGRSTAQRALAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLAAAPLD
Ga0137397_102311151	3300012685	Vadose Zone Soil	MHSENTILGRSTAQRTLAILACAALLFFASGGSFLHQHTKGPDPACHVCQALHMPTLAAAPLDLVSTPELVTWYSSLPL
Ga0137397_112779621	3300012685	Vadose Zone Soil	MDPQEAIFGRTGVRRALALLACVALLYFAAGGSLFHHHTNGPDTACHICQALHMPALAASRLDLAST
Ga0137395_100042531	3300012917	Vadose Zone Soil	MHWGISIFGGTIARRAVALLASVALLYFAAGGSLLHQHTNGPDAACHLCQVLHMPALAATRVDFASTPQTVTLF
Ga0137395_106428121	3300012917	Vadose Zone Soil	MHPREAIFGRTVGRRALALLASVALLYFAAGGSLFHQHTSGPDTACHVCQVLHMPALAAARLDLVIAPQIIT
Ga0137396_107440953	3300012918	Vadose Zone Soil	MYLPEAIFGRTVVRRALALLACAALLYFAAGGSLFHQHTNGPDPACHICQAL
Ga0137396_112756102	3300012918	Vadose Zone Soil	MHSGNTIIGRSTAQRALAILACVALLYFAAGGSFLHEHAKGPDTSCHVCQALHMPTLAAEPLDLVSQPELVTWYSSLPR
Ga0137394_102422931	3300012922	Vadose Zone Soil	MHSENTIFGRSTAQRTLAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLTAA
Ga0137394_111229961	3300012922	Vadose Zone Soil	MHSENKIFRRSTAQRALAILACTALLYFAAGGSFLHEHAKAPDTACHVCQALHMPTLAAAPLDLVGAPEFA
Ga0137394_111995291	3300012922	Vadose Zone Soil	MSLRQTNLGRTALRRALALLACVALCYFAAGGSLFHQHTTGPDNACHICQALHMPALAAA
Ga0137394_112534221	3300012922	Vadose Zone Soil	MHWENTIFRRSTAQRALAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHM
Ga0137419_101167194	3300012925	Vadose Zone Soil	MSSPGIKLGRVFARRAMALTACAALLYFAAGGAYLHQHKGGNDTACHVC
Ga0137419_106120871	3300012925	Vadose Zone Soil	MHPREAIFGRTVGRRALALLASVALLYFAARGSLFHQHTSGPDTACHICQVLHMPALAAA
Ga0137419_106729311	3300012925	Vadose Zone Soil	MYLQKAIFGRTVTRRALALLACAALLYFAAGGSLFHEHTNGPDTACHM
Ga0137419_107220682	3300012925	Vadose Zone Soil	MHSENTSFGRSTAQRTLAILACVALLYFAAGGSFLHEHTNGPDTACHVCQALHMPALAAAPL
Ga0137419_118636781	3300012925	Vadose Zone Soil	MVLRGTIFGRSMVRRALALVACAALLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLD
Ga0137404_105308133	3300012929	Vadose Zone Soil	MHPREAIFGRTVGRRALALLASVALLYFAAGGSLIHQHTSGPDTACHICQVLHMPALAA
Ga0137404_115813182	3300012929	Vadose Zone Soil	MRPQETVFGRKASRHALALLACAALLYFAAGGSLFHQHPNGPDTACHICQALHMPALAAARLDLVSAPQVKT
Ga0137407_117761381	3300012930	Vadose Zone Soil	MRREMSIFGGTTARRSMALLACVALLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLDLASTPQVVSWYSSVPQH
Ga0137407_120803681	3300012930	Vadose Zone Soil	MDPQEAIFGRTGVRRALALLACVALLYFAAGGSLFHHHTNGPDTACHI
Ga0134078_104982171	3300014157	Grasslands Soil	MHWGISIFGGTTARRAVALLASVALLYFAAGGSLVHQHTNGPDAACHLCQVLHMPALAATRV
Ga0134078_105585332	3300014157	Grasslands Soil	MYLREAIFGRTVVRRALALLASVALLYFAAGGSLFHQHTGGPDTACHICQVLHMPAL
Ga0137420_12690392	3300015054	Vadose Zone Soil	MRREISIFGGTTARRSMALLACVALLYFAAGGSLFHQHTNGPDTACPICQALHMPALA
Ga0137418_102770561	3300015241	Vadose Zone Soil	MYLQKAIFGRTVTRRALALLACAALLYFAAGGSLFHEHTNGPDTACHMCQALHMPALAAARLDL
Ga0137412_106079781	3300015242	Vadose Zone Soil	MYLQKAIFGRTVTRRALALLACAALLYFAAGGSLFHQHPNGPDTACHICQ
Ga0137409_113368281	3300015245	Vadose Zone Soil	MYSREAIFGPTVVRRALALLACAALLYFAAGSSLFHQHTNGPDTACHVC
Ga0137403_105751553	3300015264	Vadose Zone Soil	MHPREAIFGRTVGRRALALLASVALLYFAAGGSLFHQHTSGPDTACHICQVLHMPALAAARLDLVLAPQIITR
Ga0187814_103705562	3300017932	Freshwater Sediment	MSFGRKMVRRSLALLACGALLFFVAGSYLHQHTDGPDTACHVCQALHM
Ga0187805_100159491	3300018007	Freshwater Sediment	MNSLGTIFGHKGMRRALAILGCLALLYFVAGSTLHHHTSGPDTACHICQALHMPALAAAATRYWFWL
Ga0066669_116685652	3300018482	Grasslands Soil	MHWGISIFRGTIARRAVALLASVALLYFAAGGSLVHQHTNGPDAACHLCQVLHMPALAATRVDLASTPQT
Ga0179590_11302221	3300020140	Vadose Zone Soil	MHPREAIFGRTVGRRGLALLASVALLYFAAGGSLFHQHTSGPDTACHVCQVLHMPALAAARLDLVIAPQIITRHSSL
Ga0179594_100697011	3300020170	Vadose Zone Soil	MHSENTILGRSTAQRTLAILACAALLFFASGGSFLHQHTKGPDPACHVCQALHMPTLAAAPLDLVS
Ga0179594_102050252	3300020170	Vadose Zone Soil	MHWENTIFRRSTAQRALAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLAAAPLDLVSTP
Ga0179594_102818591	3300020170	Vadose Zone Soil	MHSENTIFGRSTAQRALAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLAAAPLDLVSTPEVVTWYSS
Ga0179594_103907691	3300020170	Vadose Zone Soil	MHSKNTIFGRSTAQRTLAILACAALLYFAAGGSFLHQHTKGPDAACHVCQALHLPTLAAAPLDLVSTPELVTWYSSLPLHA
Ga0179592_100026888	3300020199	Vadose Zone Soil	MHWGISIFGGTIVRRAVALLASVALLYFAAGGSLLHQHTNGPDAACHLCQVLHM
Ga0210407_111447851	3300020579	Soil	MHSGGTIYGGTIARRLLAVLACAALLYFAAGGSLFHQHTTGPDNACHICQALYMPALEVARLDF
Ga0210406_103472541	3300021168	Soil	MDVLKSIFGRKTAQSALALLACAALLYFAAGGTLLHQHAAGPDNACHVCQSLHMPALA
Ga0210400_105726541	3300021170	Soil	MELQKAIFGRTVTRRALALLACVALLYFAAGGSLFHEHTNGPDTACHMCQALHMPALAAARLDLVSTPEIVTW
Ga0210405_111924382	3300021171	Soil	MNRLRAIFGRTVVRRALALLACTALLYFAAGGSFLHEHTKGPDTACHICQALHMPTLAAAPLDLVSTPEIVTWYF
Ga0210386_107854911	3300021406	Soil	MRRALALLACVALLYFAAGGSLFHQHTNGPDTACHICQVLHMPALAAARLDLVSTPVLVTWYSSLPQHA
Ga0210409_111032901	3300021559	Soil	MDLMRIMPGRTAVRRGMALLACAALLYFAAGGSFLHEHTKGPDTACHICQA
Ga0179589_102669091	3300024288	Vadose Zone Soil	MHPREAIFGRTVGRRGLALLASVALLYFAAGGSLFHQHTSGPDTACHVCQVLHMPALAAARLDLVIAPQIITRHSSLPQH
Ga0209350_11423282	3300026277	Grasslands Soil	MHWGVFIFGRSAVSRALALLASVALLYFAAGGSLFHQHTSGPDTACPICQVLHMPALAAVRLGLVST
Ga0209267_11505091	3300026331	Soil	MHGGIRIFGGTIVRRALALIACSALLYFALGATLPHGHAQGPDNACHVCQALHMPALAAARLDLSSTPQIVTWYSSAPQHS
Ga0257157_10227603	3300026496	Soil	MYLQKAIFGRTVTRRALALLACAALLYFAAGGSLFHEHTNGPDTACHMCQALHMPALAAARL
Ga0257158_10721712	3300026515	Soil	MNPREAIFGRTVVRRALALMACAAMLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAA
Ga0209806_10453801	3300026529	Soil	MDWGIRIFGGTIVRRALALVACSALLYFALGATLPHGHAQGPDNACHVCQALHMPALAAARLDLSSTPQIVTWYSSAPQHS
Ga0209056_1001127110	3300026538	Soil	MHWWISIFGGTRRAVPLLASVALLYFAAGGSLVHQHTNGPDAACHLCQVLHMPALAATRVDLASTPQTVTLFSSRPQH
Ga0209376_11645302	3300026540	Soil	MYWQKAIFGRTIVRRALAVLAFAALLYFAVGATLPHAHTQGPDNACHICQALHMPGAGCCPA
Ga0209156_102791011	3300026547	Soil	MYLREAIFGRTVVRRALALLASVALLYFAAGGSLFHQHTGGPDTA
Ga0209161_101466451	3300026548	Soil	MHWGISIFGGTIGRRAVALLASVALLYFAAGGSLVHQHTNGPDAACHLCQVLHMPALAATRVDLASTPQTVTLFSSLPQH
Ga0179587_111661582	3300026557	Vadose Zone Soil	MNLEETIFGRGHGRIALALLACAALLYFAAGGSLFHQHPNGPDTACHICQALHMPAL
Ga0208981_11973802	3300027669	Forest Soil	MHSWKTIFGRSTVQRALAILACAALLYFAAGGSFLHEHAKGPDTACHVCQALHSPTLAAAPLDLVSTPELVSWYS
Ga0209588_11829323	3300027671	Vadose Zone Soil	MHWGVSIFGRTVVRRAVALLACVALLYFAAGGALFHEHTNGPDTACHICQALHMPALAAARL
Ga0209118_10061671	3300027674	Forest Soil	MKTQGTIFGGMLVRRALALLACAALLYFAAGGSLFHQHTNGPDTACHICQALHM
Ga0209283_103428423	3300027875	Vadose Zone Soil	MVPQEAIFGRTVARHALALVACAALLYFAAGGSLFHQHTNGSENACHICQALH
Ga0209283_104775793	3300027875	Vadose Zone Soil	MHPQEAIFGRTVVRRALALLACAALLYFAAGGSLFHQHTNGPDTACHICQ
Ga0209068_102877673	3300027894	Watersheds	MNMQGSMLGQTFTRRALALLACAALLYFAAGGALFHHHTNGPDTACHICQALHMPALAAARLDLIRTPQII
Ga0209067_108444371	3300027898	Watersheds	MHSERTIFGSTAARRALALLACAAMLYFAVGGSLFHQHTNGPDTACHICQALHM
Ga0310037_104378182	3300030494	Peatlands Soil	MNSEGTIFGGTFTRRALALLACAALLYFAAGGSLFHQHTNGSENACHICQALHMPALAAARLDLVSTPQIVT
Ga0170834_1005305692	3300031057	Forest Soil	MHSGGTIFGGTITRRSLALLACVALLYFAAGGSLFHQHTKGPDNACHICQALHMPALA
Ga0318541_102667451	3300031545	Soil	MFGQSTSRRAIALLAFAAMLYFAAAGSTFHQHTNRPESACHICQALHMPALAAARLNL
Ga0307469_102215282	3300031720	Hardwood Forest Soil	MPTGNTIFGRSTAQRALAILACAALLYFAAGGSFLHQHTKGPDPACHICQALHMPTLAAAPLDLVSTPELV
Ga0307477_108871251	3300031753	Hardwood Forest Soil	MARRTLALLACVALLYFAAGGSLFHQHTNGPDTACHICQALHMPALAAARLDFSSAPQIITWFSSLPRHAAPS
Ga0307475_100985341	3300031754	Hardwood Forest Soil	MDPQERIFGRTIARRALALLACAALLYFAAGGSLFHQHTNGSENACHICQALHMPALAAARLDLVSTPEVVTWY
Ga0307475_112976801	3300031754	Hardwood Forest Soil	MYLQEAIFGRTAVRRAMALVACAALLFFAAGGSLFHQHTNGSENACHICQ
Ga0307473_113103442	3300031820	Hardwood Forest Soil	MHTGSTIFGRLTAQRALAMLACAALLYFAAGGNFLHEHAKGPDTACHVCQALHLPTLAAAPLDLV
Ga0307479_100524081	3300031962	Hardwood Forest Soil	MDPQEAIFGRTVVRRGLALLACAALLYFAAGGSLFHQHTNGPDTACHICQALHMPA
Ga0318569_102444702	3300032010	Soil	MQSCGIMFGQSTSRRAIALLAFAAMLYFAAAGSTFHQHTNRPESACHICQALHMPALAAARLNLTSTPELVT
Ga0318533_101021561	3300032059	Soil	MFGQSTSRRAIALLAFAAMLYFAAAGSTFHQHTNRPESACHICQALHMPALAAARLNLTSTPELVTWYSSRAQHV
Ga0316212_10292152	3300033547	Roots	MHLGRTIFGRTFASRALAVLACAVLLYFAAGGSLLHHHTGGPETACHICQSLHMP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters