Metagenome / Metatranscriptome Family F081719

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081719
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	71 residues
Representative Sequence	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLIMALIGLIFCGLLHVLATNKLNGLRE
Number of Associated Samples	84
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.21 %
% of genes near scaffold ends (potentially truncated)	27.19 %
% of genes from short scaffolds (< 2000 bps)	90.35 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.509 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.316 % of family members)
Environment Ontology (ENVO)	Unclassified (27.193 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.561 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 84.51% β-sheet: 0.00% Coil/Unstructured: 15.49%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01740	STAS	18.42
PF00583	Acetyltransf_1	6.14
PF04367	DUF502	3.51
PF13561	adh_short_C2	2.63
PF14067	LssY_C	1.75
PF13191	AAA_16	0.88
PF06127	Mpo1-like	0.88
PF11953	DUF3470	0.88
PF13276	HTH_21	0.88
PF01527	HTH_Tnp_1	0.88
PF00916	Sulfate_transp	0.88
PF05598	DUF772	0.88
PF00144	Beta-lactamase	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2928	Uncharacterized membrane protein	Function unknown [S]	3.51
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.88
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.88
COG4539	2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)	Lipid transport and metabolism [I]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
All Organisms	root	All Organisms	46.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
cellular organisms	root	All Organisms → cellular organisms	46.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.30 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	4.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.54 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	4.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.02 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	4.39 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.75 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Synechococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae	4.39 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.51 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	1.75 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Synechococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus	4.39 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	1.75 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.75 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
unclassified Synechococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus	4.39 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.75 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	1.75 %
Bradyrhizobium sp. ORS 375	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 375	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.51 %
Synechococcus sp. EJ6-Ellesmere	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. EJ6-Ellesmere	4.39 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.75 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	1.75 %
Bradyrhizobium sp. ORS 375	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 375	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10043374	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300002245\|JGIcombinedJ26739_100593474	Not Available	984	Open in IMG/M
3300003505\|JGIcombinedJ51221_10274723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	685	Open in IMG/M
3300003505\|JGIcombinedJ51221_10344349	Not Available	606	Open in IMG/M
3300003505\|JGIcombinedJ51221_10440623	Not Available	527	Open in IMG/M
3300005093\|Ga0062594_100930025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	825	Open in IMG/M
3300005332\|Ga0066388_100769564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1560	Open in IMG/M
3300005332\|Ga0066388_105145929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	664	Open in IMG/M
3300005436\|Ga0070713_100342083	Not Available	1386	Open in IMG/M
3300005563\|Ga0068855_100508957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1307	Open in IMG/M
3300005764\|Ga0066903_100218943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2883	Open in IMG/M
3300005764\|Ga0066903_100524481	All Organisms → cellular organisms → Bacteria → Proteobacteria	2018	Open in IMG/M
3300005764\|Ga0066903_100584770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1928	Open in IMG/M
3300005764\|Ga0066903_100619092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1882	Open in IMG/M
3300005764\|Ga0066903_103518463	Not Available	844	Open in IMG/M
3300006028\|Ga0070717_10139420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2091	Open in IMG/M
3300006050\|Ga0075028_100345781	Not Available	839	Open in IMG/M
3300006050\|Ga0075028_100734529	Not Available	597	Open in IMG/M
3300006057\|Ga0075026_100401546	Not Available	771	Open in IMG/M
3300006059\|Ga0075017_100922533	Not Available	678	Open in IMG/M
3300006102\|Ga0075015_100046350	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300006172\|Ga0075018_10199550	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300006176\|Ga0070765_100530485	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300006176\|Ga0070765_101434672	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300006904\|Ga0075424_101173933	Not Available	817	Open in IMG/M
3300009098\|Ga0105245_10182512	All Organisms → cellular organisms → Bacteria → Proteobacteria	2006	Open in IMG/M
3300009520\|Ga0116214_1027213	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300009521\|Ga0116222_1046657	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300009523\|Ga0116221_1065792	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300009700\|Ga0116217_10026188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4516	Open in IMG/M
3300009839\|Ga0116223_10177400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1312	Open in IMG/M
3300010048\|Ga0126373_12235323	Not Available	608	Open in IMG/M
3300010360\|Ga0126372_11087592	Not Available	817	Open in IMG/M
3300010376\|Ga0126381_101529738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	964	Open in IMG/M
3300010398\|Ga0126383_10251169	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300012180\|Ga0153974_1055591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	871	Open in IMG/M
3300012957\|Ga0164303_10019910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2564	Open in IMG/M
3300012957\|Ga0164303_10520258	Not Available	766	Open in IMG/M
3300012958\|Ga0164299_10864120	Not Available	652	Open in IMG/M
3300012984\|Ga0164309_10304645	Not Available	1150	Open in IMG/M
3300015371\|Ga0132258_10618834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2720	Open in IMG/M
3300015373\|Ga0132257_100709079	Not Available	1251	Open in IMG/M
3300016270\|Ga0182036_11173091	Not Available	638	Open in IMG/M
3300016294\|Ga0182041_10800897	Not Available	842	Open in IMG/M
3300016319\|Ga0182033_10709143	Not Available	881	Open in IMG/M
3300016319\|Ga0182033_11531692	Not Available	602	Open in IMG/M
3300016404\|Ga0182037_10111072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1994	Open in IMG/M
3300017822\|Ga0187802_10224586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. EJ6-Ellesmere	724	Open in IMG/M
3300017822\|Ga0187802_10439984	Not Available	517	Open in IMG/M
3300017942\|Ga0187808_10286826	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300017943\|Ga0187819_10099360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1739	Open in IMG/M
3300017947\|Ga0187785_10615988	Not Available	559	Open in IMG/M
3300017970\|Ga0187783_10164582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 375	1633	Open in IMG/M
3300017970\|Ga0187783_10530125	Not Available	853	Open in IMG/M
3300017972\|Ga0187781_10108588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	1930	Open in IMG/M
3300017974\|Ga0187777_10293058	Not Available	1111	Open in IMG/M
3300017974\|Ga0187777_10554901	Not Available	806	Open in IMG/M
3300017974\|Ga0187777_11471102	Not Available	504	Open in IMG/M
3300017975\|Ga0187782_10605201	Not Available	842	Open in IMG/M
3300017993\|Ga0187823_10195893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. EJ6-Ellesmere	661	Open in IMG/M
3300017995\|Ga0187816_10160428	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300018001\|Ga0187815_10511542	Not Available	515	Open in IMG/M
3300018007\|Ga0187805_10076186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1511	Open in IMG/M
3300018007\|Ga0187805_10372152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. EJ6-Ellesmere	662	Open in IMG/M
3300018060\|Ga0187765_11116259	Not Available	548	Open in IMG/M
3300018062\|Ga0187784_11416874	Not Available	550	Open in IMG/M
3300020579\|Ga0210407_10099911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2204	Open in IMG/M
3300020580\|Ga0210403_11180634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. EJ6-Ellesmere	591	Open in IMG/M
3300020582\|Ga0210395_10244462	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300020582\|Ga0210395_11414329	Not Available	507	Open in IMG/M
3300020583\|Ga0210401_10346242	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300020583\|Ga0210401_10620823	Not Available	942	Open in IMG/M
3300020583\|Ga0210401_11070422	Not Available	665	Open in IMG/M
3300021170\|Ga0210400_10466593	Not Available	1042	Open in IMG/M
3300021171\|Ga0210405_10323364	Not Available	1218	Open in IMG/M
3300021171\|Ga0210405_10681841	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300021171\|Ga0210405_10929708	Not Available	659	Open in IMG/M
3300021180\|Ga0210396_10432272	Not Available	1156	Open in IMG/M
3300021180\|Ga0210396_10552296	Not Available	1004	Open in IMG/M
3300021180\|Ga0210396_10910988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. EJ6-Ellesmere	749	Open in IMG/M
3300021181\|Ga0210388_10884196	Not Available	771	Open in IMG/M
3300021401\|Ga0210393_10513319	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300021401\|Ga0210393_10932671	Not Available	704	Open in IMG/M
3300021403\|Ga0210397_10285317	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300021404\|Ga0210389_11100370	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300021407\|Ga0210383_10058564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3215	Open in IMG/M
3300021420\|Ga0210394_10203526	Not Available	1726	Open in IMG/M
3300021420\|Ga0210394_10517592	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300021420\|Ga0210394_10741494	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300021474\|Ga0210390_11635768	Not Available	506	Open in IMG/M
3300021479\|Ga0210410_10988675	Not Available	730	Open in IMG/M
3300021479\|Ga0210410_11472753	Not Available	574	Open in IMG/M
3300021560\|Ga0126371_13615114	Not Available	522	Open in IMG/M
3300025933\|Ga0207706_11276181	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300025939\|Ga0207665_11024921	Not Available	657	Open in IMG/M
3300027604\|Ga0208324_1167052	Not Available	594	Open in IMG/M
3300027619\|Ga0209330_1046229	Not Available	993	Open in IMG/M
3300027696\|Ga0208696_1263692	Not Available	533	Open in IMG/M
3300027895\|Ga0209624_10380097	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300027908\|Ga0209006_10544133	Not Available	964	Open in IMG/M
3300028906\|Ga0308309_10921965	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300029701\|Ga0222748_1116983	Not Available	534	Open in IMG/M
3300031231\|Ga0170824_107597464	Not Available	787	Open in IMG/M
3300031708\|Ga0310686_103711527	Not Available	722	Open in IMG/M
3300031708\|Ga0310686_119438689	Not Available	537	Open in IMG/M
3300031708\|Ga0310686_119535044	Not Available	779	Open in IMG/M
3300031890\|Ga0306925_10340215	Not Available	1612	Open in IMG/M
3300031912\|Ga0306921_10820047	Not Available	1061	Open in IMG/M
3300031945\|Ga0310913_11234641	Not Available	520	Open in IMG/M
3300031947\|Ga0310909_11514120	Not Available	534	Open in IMG/M
3300032076\|Ga0306924_10809124	Not Available	1044	Open in IMG/M
3300032076\|Ga0306924_11362945	Not Available	759	Open in IMG/M
3300032261\|Ga0306920_100768122	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300033289\|Ga0310914_10940862	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.86%
Host-Associated	Host-Associated	6.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.70%
Aquatic	Environmental → Aquatic	13.16%
Plants	Host-Associated → Plants	5.26%
Fungi	Host-Associated → Fungi	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.70%
Freshwater	Environmental → Aquatic → Freshwater	7.89%
Sediment	Environmental → Aquatic → Sediment	5.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.63%
Mycelium	Host-Associated → Fungi → Mycelium	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.51%
Loam	Environmental → Terrestrial → Soil → Loam	18.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.88%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.88%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.14%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.14%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.39%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_100433742	3300001546	Forest Soil	MSDLIHNEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLRERDVKA*
JGIcombinedJ26739_1005934742	3300002245	Forest Soil	MSSLVDNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE*
JGIcombinedJ51221_102747232	3300003505	Forest Soil	MSNVVHNERLKLRATFLSNLGIAAFIACFITPGFFEFVETRIERLSMALIGLIFCGILHVLATNKLNGLGE*
JGIcombinedJ51221_103443491	3300003505	Forest Soil	HNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE*
JGIcombinedJ51221_104406232	3300003505	Forest Soil	MSDLIHNEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLRERDVNA*
Ga0062594_1009300252	3300005093	Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLLMALIGLIFCGIFHILASHKLDGLRE*
Ga0066388_1007695642	3300005332	Tropical Forest Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLIMALIGLIFCGIFHVLATHKLDGLRE*
Ga0066388_1051459291	3300005332	Tropical Forest Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLNALREGDV*
Ga0070713_1003420832	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSILVHNERLKLRAMFLSNLGIAAFIACFVTPGFFEFAETRIERLVMAVIGLFFCAVLHALATNKLNGLREENA*
Ga0068855_1005089573	3300005563	Corn Rhizosphere	LRMSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLLMALIGLIFCGIFHILASHKLDGLRE*
Ga0066903_1002189435	3300005764	Tropical Forest Soil	MSNLVHNERIKLRATFLSNLGIAAFIACFITPGFFEFAETRIERFIMALIGLAFCGILHGLATNKLNGLREGNI*
Ga0066903_1005244813	3300005764	Tropical Forest Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLVMAVIGLVLCGVLHALATNKLNGLREENA*
Ga0066903_1005847703	3300005764	Tropical Forest Soil	MSDLIHNERVKLRATFLNNLGIAAFIACFITPGFFAFADTRIERLIMVLIGLIFCGVLHVLATNKLNGLR*
Ga0066903_1006190922	3300005764	Tropical Forest Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLIMALIGLAFCGILHGLATNKLNGLRERNV*
Ga0066903_1035184632	3300005764	Tropical Forest Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLMMALIGLAFCGILHVLATNKLNALRE*
Ga0070717_101394203	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSILVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMAVIGLFFCAVLHALATNKLNGLREENA*
Ga0075028_1003457812	3300006050	Watersheds	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGTLHVLATYKLSGLRE*
Ga0075028_1007345292	3300006050	Watersheds	LRATFLNNLGIAAFIACFITPRFFEFVDTRIERLIMAIIGLIVCGLFHALATSRLGGLRE
Ga0075026_1004015462	3300006057	Watersheds	MSYIVHNEKLKLRATFLNNLGIAAFIACFITPRFFEFVDTRIERLIMAIIGLIVCGLFHALATSRLSGLRE*
Ga0075017_1009225332	3300006059	Watersheds	MSNVVHNERLKLRATFLSNLGIAAFIACFIAPGFFEFAETRIERLIMALIGLAFCCILHVLATNKLNGLRE*
Ga0075015_1000463502	3300006102	Watersheds	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRVERLIMALIGLIFCGTLHVLATYKLSGLRE*
Ga0075018_101995501	3300006172	Watersheds	VHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE*
Ga0070765_1005304852	3300006176	Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE*
Ga0070765_1014346721	3300006176	Soil	NEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLRERDVKA*
Ga0075424_1011739332	3300006904	Populus Rhizosphere	MSNVVHNERLKLRATFLSNFGIAAFIACFITPGFFEFAETRIERLIMALIGLIFCGLFHVLATNKLNG
Ga0105245_101825121	3300009098	Miscanthus Rhizosphere	NERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLLMALIGLIFCGIFHILASHKLDGLRE*
Ga0116214_10272132	3300009520	Peatlands Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPVFFEFAETRIERFIMALIGLLFCGILHVLATYKLSGLRE*
Ga0116222_10466572	3300009521	Peatlands Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERFIMALIGLLFCGILHVLATYKLSGLRE*
Ga0116221_10657922	3300009523	Peatlands Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLLFCGILHVLATYKLSGLRE*
Ga0116217_100261889	3300009700	Peatlands Soil	MSNLVHNERLKLRATFLSNLGIAGFIACFITPGFFAIAETRIERLIMALMGLIFCGILHVLATYKLSGL
Ga0116223_101774002	3300009839	Peatlands Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFQFAETRIERFIMALIGLLFCGILHVLATYKLSGLRE*
Ga0126373_122353231	3300010048	Tropical Forest Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLAMALIGLVFCGILHVLATSKLNGLRE*
Ga0126372_110875922	3300010360	Tropical Forest Soil	MSDLIHNERLKLRATFLGDLGIAALIGCFITPGFFTFADTRLDWLIMALIGLIFCGVLHVLATNKLNGLR*
Ga0126381_1015297381	3300010376	Tropical Forest Soil	MSDLIHNERVKLRATFLSNLGIAAFIACFITPGFFAFADTRIERLIMALIGLIFCGVLHVLATNKLNGLREKNV*
Ga0126383_102511692	3300010398	Tropical Forest Soil	MSNLVHNERLKLRATFLSNFGIAAFIACFITPGFFEFAETRIERLIMALIGLIFCGIFHVLATHKLDGLRE*
Ga0153974_10555912	3300012180	Attine Ant Fungus Gardens	VHNERLRLRATFLSNLGIAAFIACFITPGFFEFAETRLERLIMALIGLIFCRILHVLATNKLNGLRE*
Ga0164303_100199101	3300012957	Soil	ERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE*
Ga0164303_105202582	3300012957	Soil	MTNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLGGLRD*
Ga0164299_108641201	3300012958	Soil	MTNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFELAETRIERLVMALIGLVFCGVLHALATNKLGGLRD*
Ga0164309_103046451	3300012984	Soil	MRTRPSSQRKAKLRATFLSNLGIAAFIACFITPGFFEFAETRIERFIMALIGLLFCGILHVLATYKLSGLRE*
Ga0132258_106188342	3300015371	Arabidopsis Rhizosphere	MSNVVHNERLKLRATFLSNFGIAAFIACFITPGFFEFAETRIERLIMALIGLIFCGLFHVLATNKLNGLRE*
Ga0132257_1007090792	3300015373	Arabidopsis Rhizosphere	MSNLVHNERLKLRATFLSNLGKAAFIACFITPGFFEFAETRIERLVMALIDLFFCGVLHALATNKLNGLREENA*
Ga0182036_111730912	3300016270	Soil	MSTLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFADSRIERLIMAVIGLVFCGILHVLASHKLDGLK
Ga0182041_108008971	3300016294	Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLAMALIGLVFCGILHVLATSKLN
Ga0182033_107091431	3300016319	Soil	MSTLVHNERLKLRATFLSNLGIAAFITCFVTPGFFEFADSRIERLIMAVIGLVFCGILHVLASHKLDGLKE
Ga0182033_115316921	3300016319	Soil	MSNVVHNERVKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLILALIGLVFCGVLHVLATNKLNALRE
Ga0182037_101110724	3300016404	Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETKIERLVMALIGLVFCGVLHALATNKLNALREGDV
Ga0187802_102245861	3300017822	Freshwater Sediment	PLCGVAANGRVRGGDLRMSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERFIMALIGLLFCGILHVLATYKLSGLRE
Ga0187802_104399841	3300017822	Freshwater Sediment	MSNLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETKIERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0187808_102868261	3300017942	Freshwater Sediment	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRVERLIMALIGLIFCGTLHVLATYKLSGLRE
Ga0187819_100993605	3300017943	Freshwater Sediment	MSNLVHNERLKLTFLGNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGL
Ga0187785_106159882	3300017947	Tropical Peatland	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLVMAVIGLVLCGVLHALATNKLNGLREENA
Ga0187783_101645821	3300017970	Tropical Peatland	MSHPVHNERLKLRATFLSNLGIAAFIACLITPGFFEFAETRIERLIMALIGLAFCGILHVLATSKLNGLRE
Ga0187783_105301252	3300017970	Tropical Peatland	MSNLVHNEKLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLTMALIGLVFCGVFHVLATNKLNGLRE
Ga0187781_101085882	3300017972	Tropical Peatland	MSNLVHNERVRLRATFLSNLGVAGFIACFITPGFFEFAETRIERLVMALIGVIFCGILHLLATNKLKELRE
Ga0187777_102930581	3300017974	Tropical Peatland	MSNVVHNERVKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLAMALIGLVFCGILHVLATSKLNGLRE
Ga0187777_105549012	3300017974	Tropical Peatland	MSTLIHNERLKLRATFLSNLGIAAFIACFVTPGFFEFADSRIERLIMAVIGLVFCGILHVLASHKLDGLKE
Ga0187777_114711021	3300017974	Tropical Peatland	MSNLVRNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLIFCGVLHALATNKLNGLREENA
Ga0187782_106052012	3300017975	Tropical Peatland	MSNLVHNERVRLRATFLSNLGVAAFIACFITPGFFEFAETRIERLVMALIGVIFCGILHLLATSKLKELRE
Ga0187823_101958932	3300017993	Freshwater Sediment	HNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRVERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0187816_101604282	3300017995	Freshwater Sediment	MSNLVHNERLKLRATFLGNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0187815_105115421	3300018001	Freshwater Sediment	MSNLVRNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLKE
Ga0187805_100761864	3300018007	Freshwater Sediment	MSNLVHNERLKLTFLGNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0187805_103721522	3300018007	Freshwater Sediment	MSNLVHNEGLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERFIMALIGLLFCGILHVLATYKLSGLRE
Ga0187765_111162592	3300018060	Tropical Peatland	MSHLVRNERLKLRAMFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLIFCGVLHALATNKLNGLREENA
Ga0187784_114168742	3300018062	Tropical Peatland	MSNRVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLTMAFIGLVFCGVLHALATNKLNGLRE
Ga0210407_100999111	3300020579	Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0210403_111806341	3300020580	Soil	GDTRMSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0210395_102444622	3300020582	Soil	MSDLIHNEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLRERDVNA
Ga0210395_114143291	3300020582	Soil	MTNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLAFCGVLHGLATSRLNGLRE
Ga0210401_103462422	3300020583	Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLIMALIGLIFCGLLHVLATNKLNGLRE
Ga0210401_106208232	3300020583	Soil	MTNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLGGLRD
Ga0210401_110704221	3300020583	Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLVMALIGLIFCGTLHVLATYKLNGLRE
Ga0210400_104665932	3300021170	Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLGGLRD
Ga0210405_103233641	3300021171	Soil	MSNVVHNERLKLRATFLSNLGIAAFIACFITPGFFEFVETRIERLSMALIGLIFCGILHVLATNKLNGLGE
Ga0210405_106818412	3300021171	Soil	MSNLIHNERLRLRATFLSNLGIAAFIACFITPGFFEFAETRIERLIMALIGLVFCTMFHALATNKLNGLRE
Ga0210405_109297081	3300021171	Soil	LRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLGGLRD
Ga0210396_104322722	3300021180	Soil	MSNVIHNERVKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLAMALIGLVFCGILHVLATSKLNGLRE
Ga0210396_105522962	3300021180	Soil	MSDLIHNEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHV
Ga0210396_109109882	3300021180	Soil	MSNVIHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERFIMALIGLIFCGLFHVLATNKLNGLRE
Ga0210388_108841961	3300021181	Soil	MSNVVHNERVKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLAMALIGLVFCGILHVLATSKLNGLRE
Ga0210393_105133192	3300021401	Soil	MSNVVHNERLKLRATFLSNFGIAAFIACFITPGFFEFAETRIERLIMALIGLIFCGLFHVLATNKLNGLRE
Ga0210393_109326711	3300021401	Soil	MSNVIHNERVKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLAMALIGLVFCGILHVLATSKLNELRE
Ga0210397_102853172	3300021403	Soil	MSDLIHNEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLRERDVKA
Ga0210389_111003701	3300021404	Soil	KLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLRERDVKA
Ga0210383_100585644	3300021407	Soil	MSNVVHNERVKLRATFLSNLGIAAFIACFITPGFFEFAETRTERLAMALIGLVFCGILHVLATSKLSGLRE
Ga0210394_102035262	3300021420	Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLKE
Ga0210394_105175922	3300021420	Soil	RATFLSNLGIAGFIACFITPGFFAFAETRIERLVMALIGLIFCGTLHVLATYKLNGLRE
Ga0210394_107414941	3300021420	Soil	MSDLIHNEKLRLRATFPSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLRERDVKA
Ga0210390_116357682	3300021474	Soil	MTNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLAFCGVLHGLATSRLN
Ga0210410_109886751	3300021479	Soil	MSNLVHNERLKLRATFLSNFGIAAFIACFVTPGFFEFAETRIERLIMALIGLIFCGLFHVLATNRLNGLRE
Ga0210410_114727531	3300021479	Soil	YWNRWRQRTAATFALPGANERVQGGDLRMTNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLGGLRD
Ga0126371_136151141	3300021560	Tropical Forest Soil	LKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLIMALIGLAFCGILHGLATNKLNGLRERNV
Ga0207706_112761812	3300025933	Corn Rhizosphere	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLLMALIGLIFCGIFHILASHKLDGLRE
Ga0207665_110249211	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSILVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMAVIGLFFCAVLHALATNKLNGLREENA
Ga0208324_11670521	3300027604	Peatlands Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSG
Ga0209330_10462291	3300027619	Forest Soil	MSDLIHNEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLNGLR
Ga0208696_12636921	3300027696	Peatlands Soil	MSNLVHNERLKLRATFLSNLGIAAFIACFITPGFFEFAETRIERFIMALIGLLFCGILHVLATYKLSGLRE
Ga0209624_103800972	3300027895	Forest Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLVMALIGLIFCGILHVLATYKLSGLRE
Ga0209006_105441331	3300027908	Forest Soil	MSSLVDNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGTLHVLATYKLNGLRE
Ga0308309_109219652	3300028906	Soil	SSLVDNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0222748_11169832	3300029701	Soil	MSDLIHNEKLRLRATFLSNLGIAAFIACFVTPGFFAFAETKTERLIMAIIGLIFCGVLHVIATNKLN
Ga0170824_1075974642	3300031231	Forest Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLMMALIGLIFCGILHVLATYKLSGLKE
Ga0310686_1037115271	3300031708	Soil	MSNVVHNERLKLRATFLSNLGIAAFIACFITPGFFEFADTRIERLIMALIGLAFCGILHVLATNTLNGLRE
Ga0310686_1194386891	3300031708	Soil	MSSLVHNERLKLRATFLSNLGIAGFIACFITPGFFAFAETRIERLIMALIGLIFCGILH
Ga0310686_1195350441	3300031708	Soil	MSDLVHNERLKLRATFLSNLGIAAFIACFITPGFFAFAETRIERLIMALIGLIFCGILHVLATYKLSGLRE
Ga0306925_103402152	3300031890	Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLIMALIGLVFCGVLHALATNKLNGLRE
Ga0306921_108200472	3300031912	Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLNALREGDV
Ga0310913_112346412	3300031945	Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLVMALIGLVFCGVLHALATNKLNGLRE
Ga0310909_115141201	3300031947	Soil	MGNLVHNERLKLRATFLGNLGIAAFIACFVTPGFFEFAETRIERLIMALIGLGFCGILHVLATNKLNALRE
Ga0306924_108091241	3300032076	Soil	MSTLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFADSRIERLIMAVIGLVFCGILHVLAS
Ga0306924_113629451	3300032076	Soil	MSDLIHNERVKLRATFLSNLGIAAFIACFITPGFFEFAETRIERLIGLVFCGFLHVLATNKLKELRE
Ga0306920_1007681222	3300032261	Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLIMALIGLVFCGVLHALATNKLNALREGDV
Ga0310914_109408622	3300033289	Soil	MGNLVHNERLKLRATFLSNLGIAAFIACFVTPGFFEFAETRIERLIMALIGLGFCGILHVLATNKLNALRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081719

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences