Metagenome / Metatranscriptome Family F081713

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081713
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	77 residues
Representative Sequence	MKSSPAWLETAKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPNWSRS
Number of Associated Samples	89
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	70.18 %
% of genes near scaffold ends (potentially truncated)	31.58 %
% of genes from short scaffolds (< 2000 bps)	71.93 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.140 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (14.912 % of family members)
Environment Ontology (ENVO)	Unclassified (28.070 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.632 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.14% β-sheet: 15.24% Coil/Unstructured: 67.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01757	Acyl_transf_3	3.51
PF00194	Carb_anhydrase	2.63
PF04392	ABC_sub_bind	1.75
PF03480	DctP	1.75
PF09948	DUF2182	1.75
PF00563	EAL	0.88
PF12244	DUF3606	0.88
PF03098	An_peroxidase	0.88
PF00528	BPD_transp_1	0.88
PF00313	CSD	0.88
PF06577	EipA	0.88
PF13844	Glyco_transf_41	0.88
PF03972	MmgE_PrpD	0.88
PF02353	CMAS	0.88
PF13557	Phenol_MetA_deg	0.88
PF03109	ABC1	0.88
PF14759	Reductase_C	0.88
PF13282	DUF4070	0.88
PF16156	DUF4864	0.88
PF02668	TauD	0.88
PF10082	BBP2_2	0.88
PF01180	DHO_dh	0.88
PF04773	FecR	0.88
PF09900	DUF2127	0.88
PF00535	Glycos_transf_2	0.88
PF12802	MarR_2	0.88
PF00034	Cytochrom_C	0.88
PF01168	Ala_racemase_N	0.88
PF13458	Peripla_BP_6	0.88
PF05119	Terminase_4	0.88
PF00072	Response_reg	0.88
PF08032	SpoU_sub_bind	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG3338	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	2.63
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.75
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.88
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.88
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.88
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.88
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.88
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.88
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.88
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.88
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.88
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.88
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.88
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.88
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	0.88
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	0.88
COG0167	Dihydroorotate dehydrogenase	Nucleotide transport and metabolism [F]	0.88
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
All Organisms	root	All Organisms	43.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
cellular organisms	root	All Organisms → cellular organisms	43.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.68 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.88 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	0.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.39 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.75 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.75 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.88 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.88 %
Legionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.51 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	1.75 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Rhizobiales bacterium 62-47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 62-47	0.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.88 %
Legionella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.51 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1.75 %
unclassified Microvirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga	0.88 %
Legionella saoudiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella saoudiensis	0.88 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.88 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Rhizobiales bacterium 62-47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 62-47	0.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.51 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1.75 %
Microvirga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp.	0.88 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	0.88 %
Legionella saoudiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella saoudiensis	0.88 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Rhizobiales bacterium 62-47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 62-47	0.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.14 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.51 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	1.75 %
Verrucomicrobium sp. GAS474	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474	0.88 %
Microvirga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp.	0.88 %
Legionella saoudiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella saoudiensis	0.88 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.88 %
Rhizobiales bacterium 62-47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 62-47	0.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459013\|GO6OHWN01EA50Z	Not Available	514	Open in IMG/M
2170459013\|GO6OHWN02GIA2J	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
2170459019\|G14TP7Y01BYIKD	Not Available	723	Open in IMG/M
3300000041\|ARcpr5oldR_c022103	Not Available	573	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1071611	Not Available	526	Open in IMG/M
3300000787\|JGI11643J11755_11719522	Not Available	723	Open in IMG/M
3300004062\|Ga0055500_10087748	Not Available	677	Open in IMG/M
3300004479\|Ga0062595_101389533	Not Available	639	Open in IMG/M
3300005330\|Ga0070690_101284000	Not Available	586	Open in IMG/M
3300005534\|Ga0070735_10449232	Not Available	770	Open in IMG/M
3300005713\|Ga0066905_100168767	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300005713\|Ga0066905_100307838	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300005713\|Ga0066905_101392507	Not Available	634	Open in IMG/M
3300005764\|Ga0066903_100006973	All Organisms → cellular organisms → Bacteria → Proteobacteria	10152	Open in IMG/M
3300005764\|Ga0066903_100138954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3447	Open in IMG/M
3300005764\|Ga0066903_105551285	Not Available	664	Open in IMG/M
3300005764\|Ga0066903_107460886	Not Available	564	Open in IMG/M
3300005764\|Ga0066903_107629325	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005764\|Ga0066903_107846273	Not Available	548	Open in IMG/M
3300005842\|Ga0068858_100622429	Not Available	1048	Open in IMG/M
3300005937\|Ga0081455_10023097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5793	Open in IMG/M
3300005937\|Ga0081455_10042389	Not Available	3993	Open in IMG/M
3300006041\|Ga0075023_100011694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2289	Open in IMG/M
3300006041\|Ga0075023_100598713	Not Available	512	Open in IMG/M
3300006047\|Ga0075024_100075228	Not Available	1446	Open in IMG/M
3300006049\|Ga0075417_10164586	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300006050\|Ga0075028_100843302	Not Available	561	Open in IMG/M
3300006057\|Ga0075026_100627054	Not Available	635	Open in IMG/M
3300006172\|Ga0075018_10441410	Not Available	669	Open in IMG/M
3300006755\|Ga0079222_10062084	All Organisms → cellular organisms → Bacteria → Proteobacteria	1794	Open in IMG/M
3300006854\|Ga0075425_100026233	All Organisms → cellular organisms → Bacteria → Proteobacteria	6432	Open in IMG/M
3300006871\|Ga0075434_100015583	All Organisms → cellular organisms → Bacteria → Proteobacteria	7295	Open in IMG/M
3300006880\|Ga0075429_100845452	Not Available	801	Open in IMG/M
3300006904\|Ga0075424_100565490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1214	Open in IMG/M
3300009100\|Ga0075418_10028772	All Organisms → cellular organisms → Bacteria → Proteobacteria	6054	Open in IMG/M
3300009147\|Ga0114129_10200020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2707	Open in IMG/M
3300009156\|Ga0111538_10007662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14537	Open in IMG/M
3300009168\|Ga0105104_10271111	Not Available	929	Open in IMG/M
3300009545\|Ga0105237_10496975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1226	Open in IMG/M
3300010043\|Ga0126380_10101140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp.	1730	Open in IMG/M
3300010043\|Ga0126380_11615746	Not Available	579	Open in IMG/M
3300010359\|Ga0126376_11875358	Not Available	639	Open in IMG/M
3300010359\|Ga0126376_12644579	Not Available	551	Open in IMG/M
3300010360\|Ga0126372_10849074	Not Available	910	Open in IMG/M
3300010362\|Ga0126377_12624475	Not Available	579	Open in IMG/M
3300010375\|Ga0105239_10074707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella saoudiensis	3726	Open in IMG/M
3300010376\|Ga0126381_105034646	Not Available	506	Open in IMG/M
3300010396\|Ga0134126_10007649	All Organisms → cellular organisms → Bacteria	13566	Open in IMG/M
3300010397\|Ga0134124_11405719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300010398\|Ga0126383_10324243	Not Available	1550	Open in IMG/M
3300010398\|Ga0126383_12333405	Not Available	620	Open in IMG/M
3300010868\|Ga0124844_1244166	Not Available	634	Open in IMG/M
3300012948\|Ga0126375_10547416	Not Available	873	Open in IMG/M
3300012951\|Ga0164300_11209633	Not Available	501	Open in IMG/M
3300012957\|Ga0164303_10012885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	2985	Open in IMG/M
3300012958\|Ga0164299_10045653	All Organisms → cellular organisms → Bacteria	2016	Open in IMG/M
3300012958\|Ga0164299_10877040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300012971\|Ga0126369_10401002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	1409	Open in IMG/M
3300012971\|Ga0126369_10631721	Not Available	1143	Open in IMG/M
3300012971\|Ga0126369_10676539	Not Available	1108	Open in IMG/M
3300012971\|Ga0126369_12743325	Not Available	576	Open in IMG/M
3300012971\|Ga0126369_12973555	Not Available	555	Open in IMG/M
3300012971\|Ga0126369_13444485	Not Available	518	Open in IMG/M
3300012987\|Ga0164307_10423643	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300014968\|Ga0157379_12280656	Not Available	539	Open in IMG/M
3300015371\|Ga0132258_10174779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5182	Open in IMG/M
3300015371\|Ga0132258_10638679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2676	Open in IMG/M
3300015371\|Ga0132258_11100522	Not Available	2009	Open in IMG/M
3300015371\|Ga0132258_11823856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1532	Open in IMG/M
3300015372\|Ga0132256_103453282	Not Available	531	Open in IMG/M
3300015373\|Ga0132257_100146507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2762	Open in IMG/M
3300016445\|Ga0182038_10733513	Not Available	862	Open in IMG/M
3300017944\|Ga0187786_10011199	All Organisms → cellular organisms → Bacteria	2195	Open in IMG/M
3300017947\|Ga0187785_10028466	All Organisms → cellular organisms → Bacteria → Proteobacteria	2014	Open in IMG/M
3300017959\|Ga0187779_10393359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	902	Open in IMG/M
3300017961\|Ga0187778_10010245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5856	Open in IMG/M
3300018029\|Ga0187787_10000053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12592	Open in IMG/M
3300018029\|Ga0187787_10274887	Not Available	623	Open in IMG/M
3300018032\|Ga0187788_10013781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2517	Open in IMG/M
3300018060\|Ga0187765_10003868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6222	Open in IMG/M
3300021560\|Ga0126371_11990733	Not Available	699	Open in IMG/M
3300025627\|Ga0208220_1025515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1863	Open in IMG/M
3300025916\|Ga0207663_10070484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	2252	Open in IMG/M
3300025921\|Ga0207652_10500811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1094	Open in IMG/M
3300025972\|Ga0207668_10113183	All Organisms → cellular organisms → Bacteria	2040	Open in IMG/M
3300026095\|Ga0207676_11268262	Not Available	731	Open in IMG/M
3300027783\|Ga0209448_10122860	Not Available	869	Open in IMG/M
3300027787\|Ga0209074_10035061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1457	Open in IMG/M
3300027873\|Ga0209814_10186089	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300027915\|Ga0209069_10056293	Not Available	1854	Open in IMG/M
3300028379\|Ga0268266_11092598	Not Available	772	Open in IMG/M
3300028784\|Ga0307282_10555968	Not Available	557	Open in IMG/M
3300028814\|Ga0307302_10026089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2669	Open in IMG/M
3300028824\|Ga0307310_10683437	Not Available	526	Open in IMG/M
3300030844\|Ga0075377_11443734	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300030916\|Ga0075386_12031290	Not Available	508	Open in IMG/M
3300031231\|Ga0170824_105364869	Not Available	1177	Open in IMG/M
3300031446\|Ga0170820_11821177	Not Available	676	Open in IMG/M
3300031474\|Ga0170818_111627211	Not Available	993	Open in IMG/M
3300031538\|Ga0310888_10129783	Not Available	1321	Open in IMG/M
3300031716\|Ga0310813_10017280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4846	Open in IMG/M
3300031716\|Ga0310813_10482899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 62-47	1080	Open in IMG/M
3300031744\|Ga0306918_10409422	Not Available	1057	Open in IMG/M
3300031833\|Ga0310917_10149802	Not Available	1539	Open in IMG/M
3300031890\|Ga0306925_10218447	Not Available	2056	Open in IMG/M
3300031912\|Ga0306921_12175375	Not Available	585	Open in IMG/M
3300031944\|Ga0310884_10024616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474	2477	Open in IMG/M
3300031946\|Ga0310910_10396439	Not Available	1093	Open in IMG/M
3300032180\|Ga0307471_102516473	Not Available	651	Open in IMG/M
3300032770\|Ga0335085_10098604	All Organisms → cellular organisms → Bacteria → Proteobacteria	3784	Open in IMG/M
3300032770\|Ga0335085_12067666	Not Available	576	Open in IMG/M
3300032954\|Ga0335083_10013170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9860	Open in IMG/M
3300033289\|Ga0310914_10991217	Not Available	740	Open in IMG/M
3300033291\|Ga0307417_10356635	Not Available	550	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.19%
Host-Associated	Host-Associated	21.93%
Engineered	Engineered	0.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.54%
Plants	Host-Associated → Plants	21.93%
Aquatic	Environmental → Aquatic	9.65%
Solid Waste	Engineered → Solid Waste	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.77%
Sediment	Environmental → Aquatic → Sediment	6.14%
Freshwater	Environmental → Aquatic → Freshwater	1.75%
Marine	Environmental → Aquatic → Marine	1.75%
Grass	Engineered → Solid Waste → Grass	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.49%
Loam	Environmental → Terrestrial → Soil → Loam	11.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.51%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.88%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.88%
Composting	Engineered → Solid Waste → Grass → Composting	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.53%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.63%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.88%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.02%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.14%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.75%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.75%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033291	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_08860500	2170459013	Grass Soil	MKSSPAWLETAKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPNWSRS
N57_05719330	2170459013	Grass Soil	RNSTSRVTKMKSSPAWLETAKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCANSGQHPKWSR
4MG_02582320	2170459019	Switchgrass, Maize And Mischanthus Litter	SRTRAEPANSGQYSVHTRCPQCGRKHITVFRLRHVSDSIFTQLGQFFRYRRHFDFQRLRWCINSGQRPNWSS
ARcpr5oldR_0221032	3300000041	Arabidopsis Rhizosphere	MKSSHASLEPEDSAVKYTVRTRCPQCGRKHITVFRLRHVSDSFFTQLGHFFRYTRHFDFHRLRWCINSGQHPNWNS*
AF_2010_repII_A01DRAFT_10716113	3300000580	Forest Soil	NMKSSPAWLETAKSGPEYTVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPNWSRS*
JGI11643J11755_117195221	3300000787	Soil	MTGKSSTPMKSSPAWLETTKSGAEYTVRTRCPQCGRKHITVFRLRHVSDSLFTQLGHFFRYARHFDFLRLRWCTNSGQHPDWSRS*
Ga0055500_100877481	3300004062	Natural And Restored Wetlands	MTNMKSSLTWLEAADSAEYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFLHLRWCKNSGQHPNWSS*
Ga0062595_1013895331	3300004479	Soil	MTGKSSTPMKSSPAWLETTKSGAEYTVRTRCPQCGRKHITVFRLRHVSDSLFTQLGHFFRYARHFDFLRLRWCT
Ga0070690_1012840001	3300005330	Switchgrass Rhizosphere	MRQLPADTKYRVTTTCPKCGRKHITVFRLRHVSDSFFAKVGEFYQYARHIDFWRLRWCSNSAKHPKW*
Ga0070735_104492321	3300005534	Surface Soil	MGSLLVGFGPAKADAKYTLRTRCPQCGRKHITVLRLRHVSDSFFLQLGHFFRYAKHVDFSRLRWCANSGQHPNWKPS*
Ga0066905_1001687671	3300005713	Tropical Forest Soil	MTGKSSTNMKSSPAWLTANSSAEYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFLRLRWCTNS
Ga0066905_1003078383	3300005713	Tropical Forest Soil	MGLPLTSPEPIKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSIFSHLGYFFRYARHFDFRRLRWCTNSGKHPTWSSSQFDHIAEA*
Ga0066905_1013925072	3300005713	Tropical Forest Soil	MNSSPGWHETARSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFLRLRWCTNSGQHPDWGRS*
Ga0066903_10000697313	3300005764	Tropical Forest Soil	VCEVTNMKSSPAWLETAKSGPEYTVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPNWSRS*
Ga0066903_1001389543	3300005764	Tropical Forest Soil	MRLSVAGLETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFMQLGHFFRYARHFDFLRLRWCTNSGQHPNWSPS*
Ga0066903_1055512851	3300005764	Tropical Forest Soil	SLLAWLKPAKSDAKYTVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRYARHFNFRRLRWCTNSGQHPNWSAS*
Ga0066903_1074608861	3300005764	Tropical Forest Soil	MRSSLAWLEPAKSGAKYTVHTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFRRLRWCKNSGQHPKW
Ga0066903_1076293251	3300005764	Tropical Forest Soil	MTVVHSGTNMRSSLAWLEPAKFGAKYTVHARCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFRRLRWCKNSGQHPKW
Ga0066903_1078462731	3300005764	Tropical Forest Soil	MGHRLREPAKSDSKYTVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRFARHFDFKRLRWCTNSGKHPNWSAS*
Ga0068858_1006224291	3300005842	Switchgrass Rhizosphere	MKSSPAWLETTKFGPEYTVRTRCPQCGRKHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAASGQHPTWTR
Ga0081455_100230976	3300005937	Tabebuia Heterophylla Rhizosphere	MKSSPAWRETARSGAKYTVRTRCPHCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFLRLRWCTNSGQHPDWGRS*
Ga0081455_100423894	3300005937	Tabebuia Heterophylla Rhizosphere	MGSSLAWLELAKFDAKYTVRTRCPQCGRKHITVFRLRHVSDSCFVQLGHFFRYARHFDFQRLRWCTNSGQHPNWSTSKLP*
Ga0075023_1000116944	3300006041	Watersheds	MKSSPARLETAKSGAEYTVRTRCPQRGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFLRLRWCTNSDQHPNWSRS*
Ga0075023_1005987131	3300006041	Watersheds	TRQVVCEVTNMKSPLASRETAKSDTEYAVRTCCPQCGRKHITAFRLRHVSDSFFVQLGGFFRYAKHFDFRRLRWCTNSGKPPNWSSP*
Ga0075024_1000752282	3300006047	Watersheds	MKSSPVRLETAKSGAEYTVRTRCPQRGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFLRLRWCTNSDQHPNWSRS*
Ga0075417_101645861	3300006049	Populus Rhizosphere	MTGKSSTPMKSSPAWLETTKSGAEYTVRTRCPQCGRKHITVFRLRHVSDSLFTQLGHFFRYARHFDFLRLRWCTNSGQHPNWSGS*
Ga0075028_1008433021	3300006050	Watersheds	MTVVHSRTNMKSSFASLEPTKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCTNSGRHPTWSPS*
Ga0075026_1006270541	3300006057	Watersheds	MKSSPVWPETAKAGNEYIVFTACPQCGRKHITAFRLRHVSDGFFLQLGHLFRYAKYFDFRRLRWCTNSGQHPNWS
Ga0075018_104414101	3300006172	Watersheds	MGSSLAWLEPAKSGAKYTVRTCCPQCGRKHITVFRLRHASDSFFAKLGHFFRYARHFDFQRLRWCTNSGQHPNWSA*
Ga0079222_100620842	3300006755	Agricultural Soil	MTSSGLEPAKSGANYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCTNSGQHPNWSPS*
Ga0075425_1000262337	3300006854	Populus Rhizosphere	MKSSPAWLETTKFGPEYTVRTRCPQCGRRHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAASGQHPTWTRS*
Ga0075434_10001558312	3300006871	Populus Rhizosphere	MKSSPAWLETTKFGPEYTVRTRCPQCGRKHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAASGQHPTWTRS*
Ga0075429_1008454523	3300006880	Populus Rhizosphere	MTGKSSTPMKSSPAWLETTKSGAEYTVRTRCPQCGRKHITVFRLRHVSDSLFTQLGHFFRYARHFDFLRLRWCTNSGQHP
Ga0075424_1005654902	3300006904	Populus Rhizosphere	MGLSQTSPEPARSGAKYSVRTRCPQCGRQHITVFRLRHVSDSIFSHLGYFFRYARHFDFRRLRWCTNSGKHPTWSSS*
Ga0075418_100287727	3300009100	Populus Rhizosphere	MKSSAAWLETAKSGAEYRVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPDWSRS
Ga0114129_102000203	3300009147	Populus Rhizosphere	MKSSPAWLETTKSGAEYTVRTRCPQCGRKHITVFRLRHVSDSLFTQLGHFFRYARHFDFLRLRWCTNSGQHPNWSGS*
Ga0111538_1000766210	3300009156	Populus Rhizosphere	MKSSAAWLETAKSGAEYRVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPDWSRS*
Ga0105104_102711112	3300009168	Freshwater Sediment	MKSSPAWLETAKSGVEYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYANHFDFLRLRWCTNSGQHPNWSRS*
Ga0105237_104969752	3300009545	Corn Rhizosphere	MGLSQTSPEPARSGAKYSVRTRCPQCGRQHITVFRLRHVSDSVFSHLGYFFRYARHFDFRRLRWCTNSGKHPTWSSS*
Ga0126380_101011401	3300010043	Tropical Forest Soil	MGSLLAWLELAKFDAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCTNSGQHPNWSAS*
Ga0126380_116157461	3300010043	Tropical Forest Soil	MKSSSAWAETAKFGVVYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFLRLRWCINSGQHPNWSPSKLP*
Ga0126376_118753581	3300010359	Tropical Forest Soil	MRSPLSWPDPVDFGAKYTVRTRCPQCGRKHITVFRLRHVSDSIFAHLGYFFRYARHFDFRRLRWCTNSGQPPNWSPS*
Ga0126376_126445791	3300010359	Tropical Forest Soil	SVKSDAKYSVRTRCPQCGREHITVFRLRHVSDSIFAHLGYFFRYRRHFDFRRFRWCTNSGQHPNWSPSTNGTRIGF*
Ga0126372_108490741	3300010360	Tropical Forest Soil	VTNMKSSPAWLETAKSGPEYTVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFLYAKHFDFWRLRWCTNSGQHPNWSRS*
Ga0126377_126244752	3300010362	Tropical Forest Soil	MKSSSAWPETAKFGVVYTVRTRCPQCGRKHITVFRLRHVSDSFFLQLGHFFRYARHFDFLRLRWCTNSGQHPNWSRS*
Ga0105239_100747072	3300010375	Corn Rhizosphere	MRSSLASLEPTKSDSEYSVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRYARHFDFQRLRWCANSGQHPNWSAS*
Ga0126381_1050346461	3300010376	Tropical Forest Soil	MRLSVAGRETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFMQLGHFFRYARHFDFLRLRWCTNSGQHPNWSPS*
Ga0134126_100076495	3300010396	Terrestrial Soil	MRLPFAWLESTRSEAKYTMRARCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFARLRWCPNSGQHPNWRPS*
Ga0134124_114057191	3300010397	Terrestrial Soil	MKSSHASLEPEDSAVKYTVRTRCPQCGRKHITVFRLRHVSDSFFTQLGHFFRYTRHFDFHRLRWCINSGQHPNWNF*
Ga0126383_103242432	3300010398	Tropical Forest Soil	MTSSRESAKSGAKYTVRTRCPQCGRKHITVLRLRHVSDGFFVQLGHFFRYARHFDFHHLRWCTNSGQHPNWSS*
Ga0126383_123334051	3300010398	Tropical Forest Soil	MKSSPAWLEAAKSGAEYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFLRLRWCTNSGQHPNWSPS*
Ga0124844_12441661	3300010868	Tropical Forest Soil	TNMTSSSARLETAKFGVVYTVRTHCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFLRLRWCTNSGQHPNWRRS*
Ga0126375_105474162	3300012948	Tropical Forest Soil	MGSSLAWLEPAKSDAKYTVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRYARHFDFQRLRWCTNSGQHPNWSAS*
Ga0164300_112096331	3300012951	Soil	MRSSLASLEPTKSDSEYSVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFIRYARHFDFQRLRWC
Ga0164303_100128853	3300012957	Soil	MRSSLATLEPTKSAAKYSVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRYARHFDFQRLRWCTNSGQHPNWSAS*
Ga0164299_100456533	3300012958	Soil	MKSSPAWLETTKFGPEYTVRTRCPQCGRKHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAAAGQHPTWTRS*
Ga0164299_108770402	3300012958	Soil	TNMKYPPAWLKTAESDTGYTVRTRCPQCGRRHVTAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGKHPNWSRS*
Ga0126369_104010021	3300012971	Tropical Forest Soil	MRSLLAWLKPAKSDAKYTVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRYARHFNFRRLRWCTNSGQHPNWSAS*
Ga0126369_106317211	3300012971	Tropical Forest Soil	MGSSLAWLKPAKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFMQLGHFFRYARHFDFQRLRWCTNSGQHPNWGASKAVW*
Ga0126369_106765391	3300012971	Tropical Forest Soil	MSSSPERSQSGKSGAKYTVRTRCPQCGREHITVFRLRHVSDSIFAHLGYFFRYRRHFDFRRFRWCTNSGQHPNWSPSTHASRIGF*
Ga0126369_127433251	3300012971	Tropical Forest Soil	MRLSVAGRETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFMQLGHFFRYARHFDFLRLRWCTNSGQH
Ga0126369_129735552	3300012971	Tropical Forest Soil	VTNMKSSPAWLETAKSGPEYTVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPNWS
Ga0126369_134444852	3300012971	Tropical Forest Soil	GDGPSTRGTNMTTSSARPQSVKSDAKYSVRTRCPQCGREHITVFRLRHVSDSIFAHLGYFFRYRRHFDFRRFRWCTNSGQHPNWSPSTNGTRIGF*
Ga0164307_104236432	3300012987	Soil	MKSSPVWFETARSGAEYTVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPNWSAS*
Ga0157379_122806561	3300014968	Switchgrass Rhizosphere	MKSSPAWRETAKSGVEYTVRTRCPQCGRKHITAFRLRHVSDGFFLQLGHFFRYPKHFDFRRLRWRTNSGQHPNWSRS*
Ga0132258_101747795	3300015371	Arabidopsis Rhizosphere	MRSSLARPEPAKSSAEYSVRTRCPLCGRKHITVFRIRHVSDTFFVQLEHFFRYARHFDFHRWRWCTNSGQHPNWSALKLRR*
Ga0132258_106386795	3300015371	Arabidopsis Rhizosphere	MRSSLAGFEPTKSGVEYAVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFYRLRWCPNSGRHPKWSPS*
Ga0132258_111005223	3300015371	Arabidopsis Rhizosphere	MKSLPGTAKSSAEYTVRTRCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFLRLRWCTNSGQHPNWSRS*
Ga0132258_118238561	3300015371	Arabidopsis Rhizosphere	VINMTSSPAWPEIAKPSAEYTVRTRCPQCGRKHITVFRLRHVSDNFFVQLGHFFRYAKHFDFLRLRWCKNSGQHPNWSRS*
Ga0132256_1034532822	3300015372	Arabidopsis Rhizosphere	LLLVQKPVAKYTVHTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFVRLRWCANSGQRPKWGVS*
Ga0132257_1001465073	3300015373	Arabidopsis Rhizosphere	MRSSLASKEPGKFGAKYTVRTRCPQCGRNHITVFRLRHVSDSIFVQLGNFFRYARHFDFQRLRWCTNSGQHPKWTAS*
Ga0182038_107335131	3300016445	Soil	LSRTNMRLSVAGLETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRYTRHFDFKRLRWCTNSGQHPNWSPT
Ga0187786_100111992	3300017944	Tropical Peatland	MNSSLAWLEMAKPGVTYSVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCTNSGQHPNWSSS
Ga0187785_100284662	3300017947	Tropical Peatland	MRSSPAWPEPAKSDADYTVRTRCPQCGRNHITVLRLRHVSDSFFVQLGHFFRYTRHFDFQRLRWCINSGRHPNWGPS
Ga0187779_103933591	3300017959	Tropical Peatland	MRSLLAWLEPAKSGTKYTVRARCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCTNSGQHPKWSSS
Ga0187778_100102454	3300017961	Tropical Peatland	MRSLLAWLEPAKSGAKYTVRARCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCTNSGQHPKWSSS
Ga0187787_100000537	3300018029	Tropical Peatland	MRSSPAWPEPAKSDSDYAVRTRCPQCGRNHITVLRLRHVSDSFFVQLGHFFRYTRHFDFQRLRWCINSGRHPNWGPS
Ga0187787_102748871	3300018029	Tropical Peatland	MKSSPAWLEPAKSGAEYTVRTRCPQCGRKHITVFRLRHASDSFFVQLGHFFRYAKHFDFLRLRWCTNSGQHPNWSHS
Ga0187788_100137814	3300018032	Tropical Peatland	MGWSSRTWLKPAKSGATYTVRARCPQCGRKHITVFRLRHVSDSVFVQLGHFFRYARHYDFHRLRWCTNSGGH
Ga0187765_100038688	3300018060	Tropical Peatland	MRSSPAWPESAKSDADYTVRTRCPQCGRNHITVLRLRHVSDSFFVQLGHFFRYTRHFDFQRLRWCINSGRHPNWGPS
Ga0126371_119907331	3300021560	Tropical Forest Soil	MGSSLAWLKPAKSGAKYTVRTRCPQCGRKHITVFRLRHASDSFFMELGHFFRYARHFDFQRLRWCPNSGQHPNWGAS
Ga0208220_10255153	3300025627	Arctic Peat Soil	MRSSIAWSESKSDAKYTMRARCPRCGRKHITVFRLRHVSDGFFVQLGFFFRYARHFDFSRMRWCPNSGQHPNWRPS
Ga0207663_100704842	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRSSLATLEPTKSAAKYSVRTRCPQCGRKHITVFRLRHVSDSFFAQLGHFFRYARHFDFQRLRWCTNSGQHPNWSAS
Ga0207652_105008112	3300025921	Corn Rhizosphere	MGLSQAAPEPARSGAKYSLRTRCPQCGRQHITVFRLRHVSDSVFSHLGYFFRYARHFDFRRLRWCTNSGKHPTWSSS
Ga0207668_101131831	3300025972	Switchgrass Rhizosphere	SPAWLQTTKFGPEYTVRTRCPQCGRKHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAASGQHPTWTRS
Ga0207676_112682623	3300026095	Switchgrass Rhizosphere	MKSSPAWLETTKFGPEYTVRTRCPQCGRRHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAAS
Ga0209448_101228602	3300027783	Bog Forest Soil	MRLSTTWLGSAKSDAKYIIRTRCPQCGRKHITVFRLRHVSDSFFLQLGHFFRYARHFDFSRLRWCPNSGRHPNWRPS
Ga0209074_100350611	3300027787	Agricultural Soil	MTSSGLEPAKSGANYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCTNSGQHPNWSPS
Ga0209814_101860892	3300027873	Populus Rhizosphere	MTGKSSTPMKSSPAWLETTKSGAEYTVRTRCPQCGRKHITVFRLRHVSDSLFTQLGHFFRYARHFDFLRLRWCTNSGQHPNWSGS
Ga0209069_100562932	3300027915	Watersheds	MKSSPVRLETAKSGAEYTVRTRCPQRGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFLRLRWCTNSDQHPNWSRS
Ga0268266_110925981	3300028379	Switchgrass Rhizosphere	MTDTKVSPAWLEATGPGAVYSVRTKCPQCGRKHITAFRLRHVSDSFFVQLGHFFRYARHFDFRRLRWCTNSG
Ga0307282_105559682	3300028784	Soil	MKSSPAWLETAKSGAEYTVRTRCSQCGRKHITAFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPNWSRS
Ga0307302_100260894	3300028814	Soil	MKSSPAWLETAKSGAEYTVRTRCPQCGRKHITAFRLRHVSDNFFVQLGHFFRYANHFDFRRLRWCTNSGQLPNWSRS
Ga0307310_106834373	3300028824	Soil	MKSSPAWLETAKSGAEYTVRTRCSQCGRKHITAFRLRHVSDSFFVQLGHFYRYAKHFDFRRLRWCTNSGQHPNWSRT
Ga0075377_114437342	3300030844	Soil	MKSSPAWLETAKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPKWSRS
Ga0075386_120312901	3300030916	Soil	MGSSLAWLEPAKSGAKYTVRTRCPQCGRKHITVFRLRHASDSFFAKLGHFFRYARHFDFQRLRWCTNSGQHPNWSAS
Ga0170824_1053648692	3300031231	Forest Soil	MRSSLASLQPRKSAAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCINSGRHPKWSPS
Ga0170820_118211772	3300031446	Forest Soil	MTVVHPRTNMRSSLASLQPRKSAAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYARHFDFQRLRWCINSGRHPKWSPS
Ga0170818_1116272112	3300031474	Forest Soil	MKSSPARLETAKSGAKYTVRTRCPQCGRKHITVFRLRHVSDSFFVQLGHFFRYAKHFDFRRLRWCTNSGQHPKWSRS
Ga0310888_101297831	3300031538	Soil	MKSSPAWLETTKFGPEYTVRTRCPQCGRKHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAASGQ
Ga0310813_100172802	3300031716	Soil	MRSSRTRAEPANSGQYSVHTRCPQCGRKHITVFRLRHVSDSIFTQLGQFFRYRRHFDFQRLRWCINSGQRPNWSS
Ga0310813_104828991	3300031716	Soil	MKSSHASLEPEDSAVKYTVRTRCPQCGRKHITVFRLRHVSDSFFTQLGHFFRYTRHFDFHRLRWCINSGQHPNWNS
Ga0306918_104094223	3300031744	Soil	MRLSVAGLETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFLQLGHFFRYARHFDFLRLRWC
Ga0310917_101498023	3300031833	Soil	MGSSLAWLKPAKSGAKYTVRTRCPQCGRKHVTVFRLRHVSDSFFMQLGHFFRYARHFDFQRLRWCTNSGQHPNWS
Ga0306925_102184473	3300031890	Soil	MRLSVAGLETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFLQLGHFFRYARHFDFLRLRWCTNSGQHPNWSPT
Ga0306921_121753751	3300031912	Soil	MGSSLAWLKPAKSGAKYTVRTRCPQCGRKHVTVFRLRHVSDSFFMQLGHFFRYARHFDFQRLRWCTNSGQHPNWSAS
Ga0310884_100246162	3300031944	Soil	MKSSPAWLQTTKFGPEYTVRTRCPQCGRKHVTVFRLRHVSDSLFVHLGHFFRYARHFDFLRLRWCAASGQHPTWTRS
Ga0310910_103964394	3300031946	Soil	MRLSVAGLETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFLQLGHFFRYARHFDFLRLRWCTNSG
Ga0307471_1025164731	3300032180	Hardwood Forest Soil	LANEYGAVTRVAKFGAEYTLRTRCPQCGRKHITVFRLRHVSDSFFVRLEDFFRYRRHLDFRRLRWCINSGRHPNWNS
Ga0335085_100986042	3300032770	Soil	MDVIGFEGGTVKSSIFSSGAAKSHAKYTMRTRCPRCGRKHITVFRLRHVSDGFFVQLGQFFRYAKHFDFPRLRWCPNSGQHPNWK
Ga0335085_120676661	3300032770	Soil	VKSSIFSFGSAKSDAKYTMRTRCPQCGRKHITVFRLRHVSDGFFVQLGHFFRYARHFDFPRLRWCPNSGQHPN
Ga0335083_1001317015	3300032954	Soil	VKPSIFSFGSAKSDAKYTMRTRCPQCGRKHITVFRLRHVSDSFFVQLGQFFRYARHFDFPRLRWCPNSGQHPNWK
Ga0310914_109912171	3300033289	Soil	AHGDAVSSPQLRNGLTTVFLSRTNMRLSVAGLETEKSKAKYTVRTRCPQCGRKHITVFRLRHVSDSFFLQLGHFFRYARHFDFLRLRWCTNSGQHPNWSPT
Ga0307417_103566351	3300033291	Salt Marsh	MRSSFVWFGSARSDAKYTMRTRCPQCGRKHITVFRLRHVLDSFFVQLGHYFRYARHFDFPRLRWCWSSPRKVVRPELCLLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081713

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences