 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F081692 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 114 |
| Average Sequence Length | 48 residues |
| Representative Sequence | MSKIKSNVKGLLNQRVRMGLFTVPLWVVGAVFLARKLRDRRRYGWA |
| Number of Associated Samples | 87 |
| Number of Associated Scaffolds | 114 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Bacteria |
| % of genes with valid RBS motifs | 84.21 % |
| % of genes near scaffold ends (potentially truncated) | 20.18 % |
| % of genes from short scaffolds (< 2000 bps) | 71.93 % |
| Associated GOLD sequencing projects | 79 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.39 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Bacteria (51.754 % of family members) |
| NCBI Taxonomy ID | 2 |
| Taxonomy | All Organisms → cellular organisms → Bacteria |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.403 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.193 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (46.491 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 41.89% β-sheet: 10.81% Coil/Unstructured: 47.30% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.39 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 114 Family Scaffolds |
|---|---|---|
| PF01613 | Flavin_Reduct | 39.47 |
| PF07690 | MFS_1 | 3.51 |
| PF14827 | dCache_3 | 2.63 |
| PF01230 | HIT | 0.88 |
| PF09913 | DUF2142 | 0.88 |
| PF13185 | GAF_2 | 0.88 |
| PF00575 | S1 | 0.88 |
| PF01875 | Memo | 0.88 |
| PF05960 | DUF885 | 0.88 |
| PF02518 | HATPase_c | 0.88 |
| PF04066 | MrpF_PhaF | 0.88 |
| PF05686 | Glyco_transf_90 | 0.88 |
| PF00672 | HAMP | 0.88 |
| PF13414 | TPR_11 | 0.88 |
| PF04675 | DNA_ligase_A_N | 0.88 |
| PF06480 | FtsH_ext | 0.88 |
| PF01871 | AMMECR1 | 0.88 |
| PF00873 | ACR_tran | 0.88 |
| PF00582 | Usp | 0.88 |
| PF04255 | DUF433 | 0.88 |
| PF02604 | PhdYeFM_antitox | 0.88 |
| PF13672 | PP2C_2 | 0.88 |
| COG ID | Name | Functional Category | % Frequency in 114 Family Scaffolds |
|---|---|---|---|
| COG1853 | FMN reductase RutF, DIM6/NTAB family | Energy production and conversion [C] | 39.47 |
| COG0465 | ATP-dependent Zn proteases | Posttranslational modification, protein turnover, chaperones [O] | 0.88 |
| COG1355 | Predicted class III extradiol dioxygenase, MEMO1 family | General function prediction only [R] | 0.88 |
| COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.88 |
| COG2078 | Predicted RNA modification protein, AMMECR1 domain | General function prediction only [R] | 0.88 |
| COG2161 | Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family | Defense mechanisms [V] | 0.88 |
| COG2212 | Multisubunit Na+/H+ antiporter, MnhF subunit | Inorganic ion transport and metabolism [P] | 0.88 |
| COG2442 | Predicted antitoxin component of a toxin-antitoxin system, DUF433 family | Defense mechanisms [V] | 0.88 |
| COG4118 | Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor | Defense mechanisms [V] | 0.88 |
| COG4805 | Uncharacterized conserved protein, DUF885 family | Function unknown [S] | 0.88 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 51.75 % |
| Unclassified | root | N/A | 48.25 % |
| Visualization |
|---|
| Powered by ApexCharts |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 11.40% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 9.65% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 7.89% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 5.26% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 4.39% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 3.51% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.51% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 3.51% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.51% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 3.51% |
| Sub-Biocrust Soil | Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil | 2.63% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 2.63% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.63% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.75% |
| Sugarcane Root And Bulk Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil | 1.75% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.75% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.75% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.75% |
| Soil | Environmental → Terrestrial → Soil → Sand → Desert → Soil | 1.75% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 1.75% |
| Host-Associated | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated | 1.75% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.75% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.75% |
| Agave | Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave | 1.75% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 0.88% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.88% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 0.88% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.88% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 0.88% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.88% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.88% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.88% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.88% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.88% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.88% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.88% |
| Sugarcane Root And Bulk Soil | Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil | 0.88% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.88% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.88% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000443 | Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly | Environmental | Open in IMG/M |
| 3300000559 | Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly | Environmental | Open in IMG/M |
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300003267 | Sugarcane bulk soil Sample L1 | Environmental | Open in IMG/M |
| 3300003319 | Sugarcane bulk soil Sample L2 | Environmental | Open in IMG/M |
| 3300003323 | Sugarcane root Sample H1 | Host-Associated | Open in IMG/M |
| 3300003992 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1 | Environmental | Open in IMG/M |
| 3300004643 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 | Environmental | Open in IMG/M |
| 3300004785 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-1 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300004803 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Environmental | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Environmental | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005562 | Agave microbial communities from Guanajuato, Mexico - As.Ma.e | Host-Associated | Open in IMG/M |
| 3300005587 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 | Environmental | Open in IMG/M |
| 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300006034 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105 | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006918 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 | Environmental | Open in IMG/M |
| 3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
| 3300009087 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 | Environmental | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009789 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28 | Environmental | Open in IMG/M |
| 3300010036 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26 | Environmental | Open in IMG/M |
| 3300010042 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B | Environmental | Open in IMG/M |
| 3300010152 | Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010166 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010870 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010874 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 3) | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012913 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2 | Environmental | Open in IMG/M |
| 3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014488 | Bulk soil microbial communities from Mexico - San Felipe (SF) metaG | Environmental | Open in IMG/M |
| 3300015158 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1A, Ice margin) | Environmental | Open in IMG/M |
| 3300018422 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T | Environmental | Open in IMG/M |
| 3300018431 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 | Environmental | Open in IMG/M |
| 3300018432 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T | Environmental | Open in IMG/M |
| 3300018465 | Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300018920 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS | Environmental | Open in IMG/M |
| 3300019377 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T | Environmental | Open in IMG/M |
| 3300020154 | Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_20 | Environmental | Open in IMG/M |
| 3300021339 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1 | Environmental | Open in IMG/M |
| 3300023268 | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6 | Environmental | Open in IMG/M |
| 3300024430 | Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 | Environmental | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027524 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028554 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (v9) | Environmental | Open in IMG/M |
| 3300028707 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148 | Environmental | Open in IMG/M |
| 3300030785 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030858 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030959 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 2A (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031058 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031089 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031938 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1 | Environmental | Open in IMG/M |
| 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Host-Associated | Open in IMG/M |
| 3300032159 | Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2) | Host-Associated | Open in IMG/M |
| 3300034172 | Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS | Environmental | Open in IMG/M |
| 3300034268 | Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2 | Environmental | Open in IMG/M |
| 3300034281 | Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15 | Environmental | Open in IMG/M |
| 3300034402 | Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| F12B_124937651 | 3300000443 | Soil | KSNVKGLLTQRVRIGLFTVPLWVVGAVFLARMVRDRRRHRYA* |
| F14TC_1004722102 | 3300000559 | Soil | MGKIKSNVKGLLTQRVRIGLFTVPLWVVGAVFLARMVRDRRRHRYA* |
| C688J18823_102837472 | 3300001686 | Soil | MGKMKKVKSGVKGVLNQRVRMGFFTVPLWVVGAVYLTRMVRNRRRQQQAETYA* |
| C688J18823_103171031 | 3300001686 | Soil | MMGKKMKKVKSGVKGVLSQRVRMGFFTVPLWVVGAVYLTRVVRDRRRQGQAETYA* |
| C688J18823_106562371 | 3300001686 | Soil | MMGKKMKKVKSGVKGVLSQRVRMGFFTVPLWVVGAVYLTKMLRDRRRQGQAETYA* |
| C688J35102_1181748091 | 3300002568 | Soil | KGVLSQRVRMGFFTVPLWVVGAVYLTKMLRDRRRQGQAETYA* |
| soilL1_100591392 | 3300003267 | Sugarcane Root And Bulk Soil | MGKIKRNVKGLLNTRVRMGLFTVPLWVVGAVFVARKLRDRRRYAPVSVSV* |
| soilL2_102810362 | 3300003319 | Sugarcane Root And Bulk Soil | MAKLSKAKVKGLLNQPVRMGFMTVPLWVVGAVFLFRQLKARRQRYA* |
| rootH1_103514643 | 3300003323 | Sugarcane Root And Bulk Soil | MGKLKSNVKSVLNQRVRLGLFSVPLWVVGAVYLTRYVRDRRRLA* |
| Ga0055470_101027061 | 3300003992 | Natural And Restored Wetlands | MGKMKKMRSGAKRVLNQRVRMGLFTVPLWVVGAVYLARTMRNRRRQQQQTYA* |
| Ga0062591_1002874682 | 3300004643 | Soil | MGKVKKNVKGLLNQRVRIGLFTVPLWVVGALFLARKLRDRRRLKYA* |
| Ga0058858_12368041 | 3300004785 | Host-Associated | EDHDMSKIKSNVKGLLNQRVRMGLFTVPLWVVGAVFLARKLRDRRRYGWA* |
| Ga0058862_123214561 | 3300004803 | Host-Associated | MGKLKKVKSGVTGILNQRVRMGLFTVPLWVVGGVFLARKLRDRRRQSQSYA* |
| Ga0070658_100222556 | 3300005327 | Corn Rhizosphere | MGKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLARKVRARRRTVAVATA* |
| Ga0070676_101264622 | 3300005328 | Miscanthus Rhizosphere | MGKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLARKVRDRRRTAAVTA* |
| Ga0070690_1000690391 | 3300005330 | Switchgrass Rhizosphere | MSKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLAKKVRDRRRVTAAVVTA* |
| Ga0068869_1013478931 | 3300005334 | Miscanthus Rhizosphere | MSLKKNVKGLLTQRVRLGLFTVPLWVVGAVFLARRVRDRRRYA* |
| Ga0070682_1007307262 | 3300005337 | Corn Rhizosphere | PIMGKMKKVKSGVKGVLNQRVRMGFFTVPLWVLGAVYVGKMLRDRRRQPKYA* |
| Ga0070682_1014013082 | 3300005337 | Corn Rhizosphere | MGKLKKVKSGVTGILNQRVRMGLFTVPLWVVGGVFLARKLRDRRRQSQTFA* |
| Ga0070691_101383332 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | MSLKKNVKGLLTQRVRLGLFTVPLWVVGAVFLARRIRDRRRYA* |
| Ga0070668_1000256804 | 3300005347 | Switchgrass Rhizosphere | MGKIKKVKSGVTGILNQRVRMGLFTVPLWVVGGVFLVRKLRDRRRQSQSYA* |
| Ga0070669_10000001162 | 3300005353 | Switchgrass Rhizosphere | MSKIKSNVKGLLNQRVRMGLFTVPLWVVGAVFLARKLRDRRRYGWA* |
| Ga0070673_1000906822 | 3300005364 | Switchgrass Rhizosphere | MSKIKKNVKSVLNQKARIGFFSVPLWVVGAVYLTRYIRDRRRLATVSA* |
| Ga0070678_1008456912 | 3300005456 | Miscanthus Rhizosphere | MGKLKSNVKSVLNQRVRLGLFTVPLWVVGAVYLTRYVRDRRRLA* |
| Ga0070685_100116411 | 3300005466 | Switchgrass Rhizosphere | MGKIKKVKSGVTGILNQRVRMGLFTVPLWVVGAVFLARRLRDRR |
| Ga0068853_1023974452 | 3300005539 | Corn Rhizosphere | MGKVKKNVKGVLNQRVRMGFFTVPLWVVGAVALTRYVKNRRNQRAAAY* |
| Ga0070665_10000023153 | 3300005548 | Switchgrass Rhizosphere | MGKIKKVKSGVTGILNQRVRMGLFTVPLWVVGAVFLARRLRDRRRQSQSYA* |
| Ga0058697_106812882 | 3300005562 | Agave | MGKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLARKVRARRRMATVTA* |
| Ga0066654_106303752 | 3300005587 | Soil | KSGVKGVLNQRVRMGFFTVPLWVVGAVYLTRVIRNRRRQAQAETYA* |
| Ga0066654_106811371 | 3300005587 | Soil | MSLKKNVKGVLNQRVRLGFFTVPLWVVGAVFLARRLRNRRQYA* |
| Ga0066654_106886962 | 3300005587 | Soil | MGKMKKVKSGVTGVLNQRVRMGLFTVPLWVVGAVYLTRMMRNRRRQQTYA* |
| Ga0068859_1000709464 | 3300005617 | Switchgrass Rhizosphere | SMSKVKKNVKGLLNTRVRMGLFTVPLWVVGAVFMARKLRDRRRYASVTA* |
| Ga0068863_1002558672 | 3300005841 | Switchgrass Rhizosphere | MSKVKKNVKGVLNQRVRMGFFTVPLWVVGAIALTRYVKNRRSQRVPAY* |
| Ga0066656_103900222 | 3300006034 | Soil | MGKMKKVKSGVKGVLNQRVRMGFFTVPLWVVGAVYLTRMMRNRRRQQTYA* |
| Ga0070716_1002662102 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MSKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLGRALRNRRRQQTYA* |
| Ga0075425_1002392202 | 3300006854 | Populus Rhizosphere | MGKVKSNVKGLLNQRVRVGLFTVPLWIVGALFLARMLRDRRRLKYA* |
| Ga0075425_1007662402 | 3300006854 | Populus Rhizosphere | MGKLKSNVKGVLSQRVRVGLFTVPLWVVGVVFVARMIRDRRQHRYA* |
| Ga0075434_1001819093 | 3300006871 | Populus Rhizosphere | MGKLKSNVKGVLNQRVRVGLFTVPLWVVGVVLLARMIRDRRQHRYA* |
| Ga0079216_110485852 | 3300006918 | Agricultural Soil | MAKLSKAKVKGLLNQPVRMGFMTVPLWIVGAVFLF |
| Ga0079218_105296532 | 3300007004 | Agricultural Soil | MAKIKSNVKGLLNTRVRMGLFTVPIWVVGAVFLARKLRDRRRHATVYSTL* |
| Ga0105107_108112481 | 3300009087 | Freshwater Sediment | MTKLTRNVKGLMNHPVRMGLLTVPLWVVGAVYLAKKLRDRRRYAY* |
| Ga0105242_103609681 | 3300009176 | Miscanthus Rhizosphere | MGKLKKVKSGVTGILNQRVRMGLFTVPLWVVGAVFLARRLRDRRRQSQSYA* |
| Ga0126307_104470872 | 3300009789 | Serpentine Soil | MGKIKSNVKGVLNQRVRMGLFTVPLWVVGAVFLARKLRDRRRYA* |
| Ga0126305_1000001337 | 3300010036 | Serpentine Soil | MGKIKSNVKGVLNTRVRMGLFTVPLWVVGAVFLARKLRDRRRYA* |
| Ga0126305_101978082 | 3300010036 | Serpentine Soil | MSKIKSNVKGLLTQRVRMGLFTVPLWVVGAVFLARKLRDRRRYGWA* |
| Ga0126314_101181302 | 3300010042 | Serpentine Soil | MGKLKSNVKGVLNQRVRMGLFTVPLWVVGAVFLARKLRDRRRYA* |
| Ga0126318_106556182 | 3300010152 | Soil | MSKMKKVKSGVKGVLNQRVRMGFFTVPLWVVGAVYLAKMLRDRRRQQQSYA* |
| Ga0126306_110744042 | 3300010166 | Serpentine Soil | MAKIKRNLKGLANQRVRMGFFTVPLWVLGAVYLARYVKNRRTRVPAY* |
| Ga0134122_100237834 | 3300010400 | Terrestrial Soil | MARIKSRVKGVLGQRVRIGLFTVPLWVVGAVFLARKLRERRRLA* |
| Ga0134122_102322092 | 3300010400 | Terrestrial Soil | MGKLKTNVKGVLNQRVRFGLFTVPLWVVGAVALARWLRDRRRHRYA* |
| Ga0134122_103937972 | 3300010400 | Terrestrial Soil | MGFKKNVKGLLKQPVRLGLFTVPLWVVGAVLVARRIRARRQLASA* |
| Ga0134122_123491691 | 3300010400 | Terrestrial Soil | MSRIKSNVKGLLNQRVRMGLFTVPLWVVGAVFLARWVRDRRRYGHA* |
| Ga0102750_103505221 | 3300010870 | Soil | MSKIKKVKSGVTGVLNQRVRMGLFSVPLWVVGAVYLARRVRDRRRQSQTYA* |
| Ga0136264_102762631 | 3300010874 | Soil | RIMSKIKKVKTGVTGVLNQRVRMGLFSVPLWVVGAVYLARRVRDRRRQSQTYA* |
| Ga0150985_1043174392 | 3300012212 | Avena Fatua Rhizosphere | MSKMKKVTKNVKGVLNQRVRMGFLTVPLWVLGVVVAARVVRDRRRQQKYA* |
| Ga0150985_1130171261 | 3300012212 | Avena Fatua Rhizosphere | MGKMKKVKSGVTGVLNQRVRMGFLTVPLWVVGAVYLARVVRDRRRQQTYA* |
| Ga0150985_1203521602 | 3300012212 | Avena Fatua Rhizosphere | MGFKKNVKGLLNQKVRLGLFTVPLWVVGAVLVARRIRARRQLASA* |
| Ga0150985_1221490901 | 3300012212 | Avena Fatua Rhizosphere | MSKMKNVKSGVRGVLNQKVRLGLFSVPVWVVGLLVVGKALRARRREQRYA* |
| Ga0150984_1043464192 | 3300012469 | Avena Fatua Rhizosphere | SPGELMMGKKMKKVKSGVKGVLSQRVRMGFFTVPLWVVGAVYLTKMLRDRRRQGQAETYA |
| Ga0150984_1140070842 | 3300012469 | Avena Fatua Rhizosphere | MSLKRNVKGLLTQRVRFGLFTVPLWVVGAVFLARRMRDRRRYA* |
| Ga0150984_1155465421 | 3300012469 | Avena Fatua Rhizosphere | RIEDTRRNRSMSKIKKVKSGVKGVLNQRVRVGLFTVPLWAVGAMFLARKLRGRRRPAPNYA* |
| Ga0150984_1219336641 | 3300012469 | Avena Fatua Rhizosphere | MSKMKKVKSGVKGVLNQRVRMGFFTVPLWVVGAVYLTRTLRNRRRQQTYA* |
| Ga0157298_102410852 | 3300012913 | Soil | MGKLKTNVKGVLNQRVRFGLFTVPLWVVGTVVLARWLRDRRR |
| Ga0137413_105245722 | 3300012924 | Vadose Zone Soil | MSKMKKVTSNVKGVLNQKVRLGLFSVPLWVVGVVVVAKALRARRREQRYA* |
| Ga0157380_100091542 | 3300014326 | Switchgrass Rhizosphere | MGKIKHNVKGIATQRVRMGFFTVPLWLFGAVYLARYLKNRRNRVPAY* |
| Ga0157380_107944931 | 3300014326 | Switchgrass Rhizosphere | MGKMKKVKSGVKGVLNQRVRMGFLTVPLWVVGAVYLTRTLRNRRRLRAETYA* |
| Ga0182001_103922641 | 3300014488 | Soil | MGKMKKVKSGVKGVTNQRVRMGFFTVPLWVVGAVYLGKMLRDRRRQQQQYA* |
| Ga0167622_10016204 | 3300015158 | Glacier Forefield Soil | MIMSKMKKVTSGVKGVLNQRVRMGLFTVPLWVVGAVFVARRMRNRRRPDYA* |
| Ga0190265_100024649 | 3300018422 | Soil | SKLKTNVKGLLNQRVRMGLFTVPIWVVGAVFLVRKLRDRRRYA |
| Ga0190265_100046771 | 3300018422 | Soil | MSKLKTNVKGLLNQRVRMGLFTVPIWVVGAVFLVRKLRDRR |
| Ga0066655_109621911 | 3300018431 | Grasslands Soil | MGKMKKVKSGVKGVLNQRVRMGFFTVPLWVVGAVYLTRVIRNRRRQVQAETYA |
| Ga0190275_100217113 | 3300018432 | Soil | MGKMKTNVKGILNQRVRMGLFTVPIWVLGAVYLAKKVRNRRRGYITA |
| Ga0190269_100728302 | 3300018465 | Soil | MNKTKLKTNVKGILNQRVRMGLFTVPLWVVGAVFVARKLRDRRRLRYAS |
| Ga0190269_105435561 | 3300018465 | Soil | MAKLSKLKVKGLLNQPVRMGFMTVPLWVVGAVFLYKQIKARRHRY |
| Ga0190269_112912412 | 3300018465 | Soil | MGKLKSNVKGVLNQRVRMGLFTVPLWVVGAIFLARMIRDRRRHRYA |
| Ga0190270_106688952 | 3300018469 | Soil | MGKIKRNVKGVLNTRVRMGLFTVPLWVVGAVFLARKLRDRRRYAAV |
| Ga0190273_117324231 | 3300018920 | Soil | MAKIKSNVKGLLNTRVRMGLFTVPIWVVGAVFLARKLRDRRRYAAV |
| Ga0190264_108199402 | 3300019377 | Soil | MSKLKTNVKGLLNQRVRMGLFTVPIWVVGAVFLVRKLRDRRRYA |
| Ga0196965_10208262 | 3300020154 | Soil | MGKMGKVKGGVKGLMNQRVRFGLFTVPLWVVAAAWVGRKLMDRRRRYA |
| Ga0193706_1000037101 | 3300021339 | Soil | MSKLKKVKSGVRGILNQRVRMGLFTVPLWVVGGVFLARKLRDRRRQSQSYA |
| Ga0247765_10016389 | 3300023268 | Plant Litter | MGKLKGNVKSLLNQRVRLGLFTVPLWVVGAVYLVRHVRDRRRLA |
| Ga0247765_10747272 | 3300023268 | Plant Litter | MGKIKKVKSGVTGILNQRVRMGLFTVPLWVVGAVFLARRLRDRRRQSQSYA |
| Ga0196962_101978101 | 3300024430 | Soil | MNKANLKANVKGLLNRRVRMGLFTVPLWVVGAVFVARKLRNRRRLRYAS |
| Ga0207680_100127952 | 3300025903 | Switchgrass Rhizosphere | MSKVKKNVKGLLNTRVRMGLFTVPLWVVGAVFMARKLRDRRRYASVTA |
| Ga0207680_100649393 | 3300025903 | Switchgrass Rhizosphere | MSKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLAKKVRDRRRVTAAVVTA |
| Ga0207705_100273884 | 3300025909 | Corn Rhizosphere | MGKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLARKVRARRRTVAVATA |
| Ga0207654_113177191 | 3300025911 | Corn Rhizosphere | MGKMKKVKSGVKGVLNQRVRMGFFTVPLWVVGAVYVGKMLRDRRRQKVAETYA |
| Ga0207681_10000012224 | 3300025923 | Switchgrass Rhizosphere | MSKIKSNVKGLLNQRVRMGLFTVPLWVVGAVFLARKLRDRRRYGWA |
| Ga0207670_105060841 | 3300025936 | Switchgrass Rhizosphere | MGKLKKVKSGVTGILNQRVRMGLFTVPLWVVGAVFLARRLRDRRRQSQSYA |
| Ga0207651_100781622 | 3300025960 | Switchgrass Rhizosphere | MSKIKKNVKSVLNQKARIGFFSVPLWVVGAVYLTRYIRDRRRLATVSA |
| Ga0207668_101538243 | 3300025972 | Switchgrass Rhizosphere | GVTGILNQRVRMGLFTVPLWVVGAVFLARRLRDRRRQSQSYA |
| Ga0207641_103813362 | 3300026088 | Switchgrass Rhizosphere | MSKVKKNVKGVLNQRVRMGFFTVPLWVVGAIALTRYVKNRRSQRVPAY |
| Ga0208998_10037844 | 3300027524 | Forest Soil | MSKMTKVKSGVKGVLTQRVRLGLFSVPVWVVGLVVVGKALRARRREQRYA |
| Ga0268264_108812661 | 3300028381 | Switchgrass Rhizosphere | MGKMKKVKSGVKGVLNQRVRMGFLTVPLWVVGAVYLTRTLRNRRRLRAETYA |
| Ga0302047_110427991 | 3300028554 | Soil | MSKIKKVKSGVTGVLNQRVRMGLFSVPLWVVGAVYLARRVRDRRRQSQTYA |
| Ga0307291_11503722 | 3300028707 | Soil | MGKIKKVKSGVTGILNQRVRMGLFTVPLWVVGGVFLVRKLRDRRRQSQSYA |
| Ga0102757_109901082 | 3300030785 | Soil | MSKIKKVRSGVKGVLNQRVRMGLFSVPLWVVGAVYLARRVRDRRRQSQTYA |
| Ga0102759_18283032 | 3300030858 | Soil | MSKASKVKKNVKGVLNQRVRVGLFTVPLWLVGAAFLGRQLMARRRRYAA |
| Ga0102759_19008121 | 3300030858 | Soil | EEPIMGKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGAVFVARKLRDRRRAAAVAVTV |
| Ga0102747_110422722 | 3300030959 | Soil | LNQRVRMGFFTVPLWVVGAVYLTRMLRNRRRQQTYA |
| Ga0102747_111334932 | 3300030959 | Soil | RQEERIMSKIKKVKSGVTGVLNQRVRMGLFSVPLWVVGAVYLARRVRDRRRQSQTYA |
| Ga0308189_105248052 | 3300031058 | Soil | MGKLKSNVKSVLSQRVRLGLFSVPLWVVGAVYLTRYVRDRRRLA |
| Ga0102748_117113872 | 3300031089 | Soil | MGKIKKVKSGVTGILNQRVRMGLFTVPLWVVGGVFLVRKLRDRRRSQSYA |
| Ga0307468_1000111844 | 3300031740 | Hardwood Forest Soil | MAKMSKINKKSIKGFLNQRVRFGFLTLPLWLVGAAFVGRKLMERRRRYA |
| Ga0307468_1000743492 | 3300031740 | Hardwood Forest Soil | MGKVKSNVKGLLNQRVRVGLFTVPLWVLAAVFLARKLRDRRRLKYA |
| Ga0308175_10000278910 | 3300031938 | Soil | MGKMKKVKSGVKGVLNQRVRMGFFTVPLWVVGAVYLTRVIRNRRREQAQTYA |
| Ga0307416_1026898082 | 3300032002 | Rhizosphere | MNKTNLKANVKGLLNQRVRMGLFTVPLWVVGAVFVARKLRDRRRLRYAG |
| Ga0268251_104644611 | 3300032159 | Agave | MGKMKKVKSGVKGVLNQRVRMGLFTVPLWMVGVVFLARKVRARRRMATVTA |
| Ga0334913_001979_3353_3493 | 3300034172 | Sub-Biocrust Soil | MGKIKRNVKGVLNQRVRMGLFTVPLWAVGAMFLARMLRDRRRQKYA |
| Ga0334913_013595_646_786 | 3300034172 | Sub-Biocrust Soil | MGKVKRNVKGLLNTRVRMGLFTVPLWVVGAVFVARKLRDRRRYATV |
| Ga0372943_0000906_10665_10805 | 3300034268 | Soil | MKKVKTGVKRVLNQRVRMGLFTVPLWVVGAVFVAQRLRNRRRPDYA |
| Ga0372943_0698551_503_661 | 3300034268 | Soil | MGKMKKVKSGVKGVLNQRVRLGLFTVPLWMVGLVFLTRKVRARRRTVVVATA |
| Ga0370481_0014507_1167_1319 | 3300034281 | Untreated Peat Soil | MSKLKKVTRNVKGVLNQRVRVGLFTVPLWVLGVVVAARVVRGRRQQQKYA |
| Ga0334960_000072_25737_25877 | 3300034402 | Sub-Biocrust Soil | MGKMKSNVKGLLNQRVRFGLFTVPLWVVGALFLARKLRDRRRYKYA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |