Metagenome Family F081684

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081684
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	87 residues
Representative Sequence	MARRNVKNHWFVSVAVPKQGHAQGFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRFISGSQLYSWVRES
Number of Associated Samples	67
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.68 %
% of genes near scaffold ends (potentially truncated)	35.96 %
% of genes from short scaffolds (< 2000 bps)	92.11 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.754 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.474 % of family members)
Environment Ontology (ENVO)	Unclassified (69.298 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.281 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.44% β-sheet: 25.93% Coil/Unstructured: 54.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01068	DNA_ligase_A_M	2.63
PF13505	OMP_b-brl	1.75
PF00816	Histone_HNS	1.75
PF14246	TetR_C_7	0.88
PF01402	RHH_1	0.88
PF04964	Flp_Fap	0.88
PF00582	Usp	0.88
PF04909	Amidohydro_2	0.88
PF10686	YAcAr	0.88
PF01936	NYN	0.88
PF13411	MerR_1	0.88
PF01220	DHquinase_II	0.88
PF02518	HATPase_c	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.63
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.63
COG2916	DNA-binding protein H-NS	Transcription [K]	1.75
COG0757	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.88
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.88
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.75 %
Unclassified	root	N/A	48.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.75 %
Unclassified	root	N/A	48.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.75 %
Unclassified	root	N/A	48.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.25 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	41.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.25 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	38.60 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.25 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	32.46 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.25 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	6.14 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.63 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	1.75 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.88 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.88 %
Bradyrhizobium shewense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium shewense	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.25 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	6.14 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	1.75 %
Rhizobium tropici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium tropici	0.88 %
Bradyrhizobium sp. C9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C9	0.88 %
Bradyrhizobium sp. OHSU_III	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. OHSU_III	0.88 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	0.88 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.88 %
Bradyrhizobium shewense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium shewense	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_108275210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300005437\|Ga0070710_10588056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300005764\|Ga0066903_100029105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6187	Open in IMG/M
3300005764\|Ga0066903_100146808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3374	Open in IMG/M
3300005764\|Ga0066903_101542186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1257	Open in IMG/M
3300005764\|Ga0066903_101797607	Not Available	1171	Open in IMG/M
3300005764\|Ga0066903_102436030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1013	Open in IMG/M
3300005764\|Ga0066903_103125529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	896	Open in IMG/M
3300005764\|Ga0066903_106225420	Not Available	624	Open in IMG/M
3300006028\|Ga0070717_11716454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300006173\|Ga0070716_100465781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	925	Open in IMG/M
3300006175\|Ga0070712_100105397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2094	Open in IMG/M
3300006175\|Ga0070712_100476738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1042	Open in IMG/M
3300010048\|Ga0126373_11835487	Not Available	669	Open in IMG/M
3300010048\|Ga0126373_13062805	Not Available	521	Open in IMG/M
3300010358\|Ga0126370_11504549	Not Available	640	Open in IMG/M
3300010366\|Ga0126379_10362544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1484	Open in IMG/M
3300010366\|Ga0126379_10633470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1158	Open in IMG/M
3300010366\|Ga0126379_10969721	Not Available	954	Open in IMG/M
3300010376\|Ga0126381_103907745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. OHSU_III	581	Open in IMG/M
3300016270\|Ga0182036_10538376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300016270\|Ga0182036_11388328	Not Available	588	Open in IMG/M
3300016294\|Ga0182041_10139702	All Organisms → cellular organisms → Bacteria	1851	Open in IMG/M
3300016294\|Ga0182041_11915147	Not Available	551	Open in IMG/M
3300016319\|Ga0182033_10272520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1385	Open in IMG/M
3300016341\|Ga0182035_10611341	Not Available	943	Open in IMG/M
3300016357\|Ga0182032_10163636	All Organisms → cellular organisms → Bacteria	1659	Open in IMG/M
3300016357\|Ga0182032_10252475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1371	Open in IMG/M
3300016357\|Ga0182032_10339799	Not Available	1198	Open in IMG/M
3300016371\|Ga0182034_10795491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	809	Open in IMG/M
3300016371\|Ga0182034_11548180	Not Available	581	Open in IMG/M
3300016387\|Ga0182040_10227573	Not Available	1388	Open in IMG/M
3300016387\|Ga0182040_10326551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1182	Open in IMG/M
3300016387\|Ga0182040_10457795	Not Available	1012	Open in IMG/M
3300016387\|Ga0182040_10688015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	835	Open in IMG/M
3300016387\|Ga0182040_11108469	Not Available	663	Open in IMG/M
3300016404\|Ga0182037_10588820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	943	Open in IMG/M
3300016404\|Ga0182037_10872698	Not Available	779	Open in IMG/M
3300016422\|Ga0182039_10935469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	775	Open in IMG/M
3300016422\|Ga0182039_10944463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	771	Open in IMG/M
3300016445\|Ga0182038_10042041	Not Available	2981	Open in IMG/M
3300016445\|Ga0182038_10601989	Not Available	949	Open in IMG/M
3300016445\|Ga0182038_11281819	Not Available	654	Open in IMG/M
3300020579\|Ga0210407_10598545	Not Available	859	Open in IMG/M
3300021178\|Ga0210408_10464848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1007	Open in IMG/M
3300021401\|Ga0210393_11377338	Not Available	564	Open in IMG/M
3300021560\|Ga0126371_13556241	Not Available	526	Open in IMG/M
3300025905\|Ga0207685_10174538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium shewense	992	Open in IMG/M
3300025906\|Ga0207699_11341637	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300025928\|Ga0207700_10940004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	774	Open in IMG/M
3300026921\|Ga0207860_1020872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	793	Open in IMG/M
3300027063\|Ga0207762_1018920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	1127	Open in IMG/M
3300027063\|Ga0207762_1032256	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300027063\|Ga0207762_1035208	Not Available	754	Open in IMG/M
3300027516\|Ga0207761_1013009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1771	Open in IMG/M
3300027516\|Ga0207761_1069423	Not Available	684	Open in IMG/M
3300027703\|Ga0207862_1077682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	999	Open in IMG/M
3300031231\|Ga0170824_109905092	Not Available	562	Open in IMG/M
3300031545\|Ga0318541_10192706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1127	Open in IMG/M
3300031545\|Ga0318541_10284607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	921	Open in IMG/M
3300031546\|Ga0318538_10824891	Not Available	504	Open in IMG/M
3300031573\|Ga0310915_10570725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	802	Open in IMG/M
3300031679\|Ga0318561_10368611	Not Available	788	Open in IMG/M
3300031680\|Ga0318574_10401557	Not Available	801	Open in IMG/M
3300031680\|Ga0318574_10810139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	549	Open in IMG/M
3300031681\|Ga0318572_10945731	Not Available	512	Open in IMG/M
3300031719\|Ga0306917_10358283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1135	Open in IMG/M
3300031719\|Ga0306917_10689729	Not Available	803	Open in IMG/M
3300031719\|Ga0306917_11300669	Not Available	563	Open in IMG/M
3300031744\|Ga0306918_10517178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	935	Open in IMG/M
3300031744\|Ga0306918_11138428	Not Available	604	Open in IMG/M
3300031768\|Ga0318509_10645243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	589	Open in IMG/M
3300031771\|Ga0318546_10498974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	854	Open in IMG/M
3300031771\|Ga0318546_11147755	Not Available	546	Open in IMG/M
3300031781\|Ga0318547_10281797	Not Available	1007	Open in IMG/M
3300031795\|Ga0318557_10484597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	568	Open in IMG/M
3300031799\|Ga0318565_10281248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	809	Open in IMG/M
3300031821\|Ga0318567_10586966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium tropici	633	Open in IMG/M
3300031833\|Ga0310917_10666839	Not Available	705	Open in IMG/M
3300031859\|Ga0318527_10489531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	525	Open in IMG/M
3300031879\|Ga0306919_11062283	Not Available	618	Open in IMG/M
3300031879\|Ga0306919_11488470	Not Available	510	Open in IMG/M
3300031890\|Ga0306925_10782232	Not Available	992	Open in IMG/M
3300031890\|Ga0306925_11449103	Not Available	675	Open in IMG/M
3300031896\|Ga0318551_10686522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	593	Open in IMG/M
3300031897\|Ga0318520_10786246	Not Available	597	Open in IMG/M
3300031910\|Ga0306923_10047835	Not Available	4708	Open in IMG/M
3300031910\|Ga0306923_12500034	Not Available	509	Open in IMG/M
3300031912\|Ga0306921_10481564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1444	Open in IMG/M
3300031912\|Ga0306921_12372547	Not Available	554	Open in IMG/M
3300031941\|Ga0310912_10128731	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300031942\|Ga0310916_10107847	All Organisms → cellular organisms → Bacteria	2247	Open in IMG/M
3300031942\|Ga0310916_10211176	Not Available	1627	Open in IMG/M
3300031942\|Ga0310916_10670094	Not Available	879	Open in IMG/M
3300031942\|Ga0310916_11086448	Not Available	665	Open in IMG/M
3300031945\|Ga0310913_10429585	Not Available	938	Open in IMG/M
3300031945\|Ga0310913_10447664	Not Available	917	Open in IMG/M
3300031946\|Ga0310910_10385373	Not Available	1110	Open in IMG/M
3300031947\|Ga0310909_10464712	Not Available	1062	Open in IMG/M
3300031947\|Ga0310909_10532401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	984	Open in IMG/M
3300031947\|Ga0310909_11599618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C9	517	Open in IMG/M
3300031954\|Ga0306926_10013031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9308	Open in IMG/M
3300031954\|Ga0306926_11333360	Not Available	836	Open in IMG/M
3300032001\|Ga0306922_10252125	Not Available	1897	Open in IMG/M
3300032008\|Ga0318562_10280834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	968	Open in IMG/M
3300032009\|Ga0318563_10673646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	556	Open in IMG/M
3300032067\|Ga0318524_10317240	Not Available	807	Open in IMG/M
3300032076\|Ga0306924_10697144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1141	Open in IMG/M
3300032076\|Ga0306924_12266214	Not Available	552	Open in IMG/M
3300032261\|Ga0306920_100119663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3912	Open in IMG/M
3300032261\|Ga0306920_100376405	All Organisms → cellular organisms → Bacteria → Proteobacteria	2112	Open in IMG/M
3300032261\|Ga0306920_101316890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1038	Open in IMG/M
3300032261\|Ga0306920_103065768	Not Available	629	Open in IMG/M
3300033289\|Ga0310914_11274899	Not Available	637	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.82%
Loam	Environmental → Terrestrial → Soil → Loam	20.18%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	72.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.02%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.02%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026921	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1082752101	3300005332	Tropical Forest Soil	KRMARRTVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDDAKQFAREMLSEKHHIFAGTLLGAHLPVRRIISGSQLNNWVRES*
Ga0070710_105880561	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LPTHEGSKRVARRKVKNHNHWFVSVATPKQGRTKGFDRRTETFPTETDAKQFAKEMLSEKHRMKKHHIVAGKLLGAYLPVRRNISGSQLYSWVRENDPRISG*
Ga0066903_1000291055	3300005764	Tropical Forest Soil	MARRKVKNHWFVSVAVPKQGYGQQFVRRTETFPTEADAKQFAREMLSEKHHIFAGTLLGALLPVRRIISGPQLHSWVGVKDADLDLT*
Ga0066903_1001468083	3300005764	Tropical Forest Soil	MARRKVKNHWFVSVEAPKQLRRASPNKSSRQTRTFPTEDAAKQFAKEMLSEKHRVFAGTLLGAHLPVRCIISGSQLYSWVGVKRSDLDLI*
Ga0066903_1015421862	3300005764	Tropical Forest Soil	MAPVLPTSAGAVLWFYEGSKRMARRNVRNGWFVSVAMPKQRQGTQTFARRTETFPTETDARQFAKEKLSEKHHMEKHRILAGTLLGAYLPVRRIISGSQLYSWVREQDQQPL*
Ga0066903_1017976071	3300005764	Tropical Forest Soil	MARRAVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDDAKQFAREMLSEKHRMEKHHIFAGTLLGAHLPVRRIISGSQLHSWAGIKKSDLDLT*
Ga0066903_1024360302	3300005764	Tropical Forest Soil	MARHKVKNDWFVSVEMPKHRQGEQTFARQTKSFPTETEAKQFAKEMLSSKSKIVAGTLLGAYLPVRRIISGSQLNSWVKESDLDLT*
Ga0066903_1031255291	3300005764	Tropical Forest Soil	MARHKVKNQWFVSVAVLKRGRIKAFDRRTETFLTETDAKQFAKEMLSKTEKRYIVAGTLRGGYLPVHRIISGSQLSSWVGALEPSPFKIRSRSDRRKPTDLVTPKPVRSSDIAAAD*
Ga0066903_1062254202	3300005764	Tropical Forest Soil	MARNTVKNRWFVSVEMPKRSAQTSARRTKTFPTETDAKQFAKEKLSKKHHIFAGTLLGAYPPVRRIISGSKLGEEDQQPL*
Ga0070717_117164541	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ARRKVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRLISGSQLYSWAGIKKSDLDLT*
Ga0070716_1004657813	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	ACPGRTSKRMARRKVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDEAKQFAKEMLSEKHHIFAGTLLGAHLPVRRLISGSQLYSWAGIKKSDLDLT*
Ga0070712_1001053973	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MARRKVKNHNHWFVSVATPKQGRTKGFDRRTETFPTETDAKQFAKEMLSEKHRMKKHHIVAGKLLGAYLPVRRNISGSQLYSWVRENDPRISG*
Ga0070712_1004767382	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MARRKVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRLISGSQLYSWAGIKKSDLDLT*
Ga0126373_118354871	3300010048	Tropical Forest Soil	HWFVSVEMPKKLRPPGPKFARQTKTFPTEAEAKQFAKEMLSEKHYIVAGTLLGAHLPVRRLISGSQLYSWVWEP*
Ga0126373_130628051	3300010048	Tropical Forest Soil	MSLSPTDEGSKRMARRTAKNHWFVSVAEPKQVHGQISARRTETFPTESDAKQFAKEMLSEKHRVFAGTLLVAHLPVRCIISGSQLYS
Ga0126370_115045491	3300010358	Tropical Forest Soil	MSLSPTDEGSKRMARRTAKNHWFVSVAEPKQVHGQISARRTETFPTESDAKQFAKEMLSEKHHMEKHHIVAGTLLGAYLPVRRIISGSQLFSWVGEVES
Ga0126379_103625442	3300010366	Tropical Forest Soil	MARHKVKNDWFVSVEVPKRSAQASARWTETFPTETDAKQFAKEMLSENYHMEKHHIVAGTLLGAYLPVRRIISGSQLYSWVGIEEPRA*
Ga0126379_106334703	3300010366	Tropical Forest Soil	MARRTVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDDAKQFAREMLSEKHRMEKHHIFAGTLLGAHLPVRRIISGSQLHSWAGIKKSDLDLT*
Ga0126379_109697212	3300010366	Tropical Forest Soil	MARRTVKNHWFVSVAAPTQLGLASPKKSARQTKTFPTEADAKQFAREMLSGKHHVFAGTLLGAHLQVRRIISGSQLYSWAGVNKSDL*
Ga0126381_1039077451	3300010376	Tropical Forest Soil	LRNVKNHWFVSVAVPKERRGAQMFARRTKSFPTEDDAKQFAKEMLSEKHHVFAGTLLGAHLPVRRLISSSQLYSWVGVKESDLDLS*
Ga0182036_105383761	3300016270	Soil	MARRKMDWFERKARRYVKNSWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHVFAGTLLVAHLPVRRIIS
Ga0182036_113883281	3300016270	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSETEKQYIVAGTLRGGYLPVPRIISGSQLYSWVGTLEPIKPAGRS
Ga0182041_101397022	3300016294	Soil	MARRTMKDHWFVSVEAPKQLRRAFPYKLSRQTKTFPTEADAKQFAREMLSETHRIFAGTLLGVHLPVRRFISGSQLYSWVREQDELPL
Ga0182041_119151471	3300016294	Soil	MARRTVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRR
Ga0182033_102725201	3300016319	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHYIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0182035_106113411	3300016341	Soil	MARRTVKNHWFVSVAAPTQLRLVSPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLHSWAGIKKSDLDVT
Ga0182032_101636362	3300016357	Soil	MARRKVKNDWFVSVAAPKGAGSGRLTETFPTETEAKQFAKERLSEKHHMEKHHIIAGTLLGAYLPVRRIISGSQLCSWVGVKDPTLI
Ga0182032_102524751	3300016357	Soil	MARRKVKNHWFVSVAVPRRQGHGQQFVRRTETFPTEADAKQFAKEMISEKRRIFAGTLLGVHLPVRRIISGSQLYSWVTEQDQQPL
Ga0182032_103397992	3300016357	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKRHKEEHHIVAGTLLGAYLPVRRIISGSQLYSWVREQPL
Ga0182034_107954911	3300016371	Soil	KRMARRKVKNHWFVSVAVPERGHGHRFVRRTETFPTETEAKQFAKEMLSEKHHTEKHRILAGTLLGVHLPVPKPPLRRCWVSLD
Ga0182034_115481802	3300016371	Soil	ARRKVKNHWFVSVSVPERGHGHRFVRRTESFPTETDAKQFAKEMLSEKRRILAGTLLGVHLPVRRIISGSQLYSWVGVNKSDLDLT
Ga0182040_102275732	3300016387	Soil	MARRTVKNHWFVSVAASTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLH
Ga0182040_103265512	3300016387	Soil	MRTGAIFGFAFSVVLPTEGSKRMARRKVKNHWFVSVSVPQRGHGHRFVRRTETFPTETDAKQFAKEMLSEKTLIVAGTLLGVYLPVRRIISGSQLYCWVGEEES
Ga0182040_104577951	3300016387	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHSFAGTLLGTHLPVRRIISGSQLDSWVGVKESDLDLT
Ga0182040_106880152	3300016387	Soil	MKNHWFVSFEVPRQGHAKAFFRRTETFSTETDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRFISG
Ga0182040_111084692	3300016387	Soil	MARHKVKNQWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLLENRRIFAGTLLNAHLPGRRLISGSQLYSWVREQDQQPL
Ga0182037_105888202	3300016404	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHIFAGTLLGVHLPLRRFISGSQLHGWAGVKKSDLDLT
Ga0182037_108726981	3300016404	Soil	MARRTVKNHWFVSVAAPTQLRLVSPKKSARQTKTFPTEDDAKQFAREMLSEKHHIFAGTLLGAHLPVRRIISGSQLHSWVGLRNPTLI
Ga0182039_109354691	3300016422	Soil	MARRTVKNHWFVSVAASTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFASTILGAHLPVRRIISGSQLHSWAGIKKSDLDLT
Ga0182039_109444631	3300016422	Soil	MARRKVKNHWFVSVSVPERGHGHRFVRRTETFPTETEAKQFAKEMLSEKHHTEKHRILAGTLLGVHLPVPKPPLRRCWVSLD
Ga0182038_100420418	3300016445	Soil	MARRTMKDHWFVSVEAPKQLRRAFPYKLSRQTKTFPTEADAKQFAREMLSEKHRIFAGTLLGVHLPVRRFISGSQLYSWVREQDEQPL
Ga0182038_106019892	3300016445	Soil	MARHTAKNHWFVSVELPKQGRIGHTFARRTKSFPTETEAKQFAKAMLSEAEKHHIVAGTLLGAYLPVRRIISGSQLCSWVGVKDPTLI
Ga0182038_112818192	3300016445	Soil	MARRKVDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETQAKQFAKEMLSEKRHKEEHHIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0210407_105985452	3300020579	Soil	MATRKVKNHWFVSVAAPTQFRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKYHIFAGTLLGAHLPVRRLISGSQLYSWAGIKKSDLDLT
Ga0210408_104648481	3300021178	Soil	MATRKVKNHWFVSVAAPTQFRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKYHIFAGTLLGAHLPVRRFISGSELYSWVRENDPRISG
Ga0210393_113773381	3300021401	Soil	MARRKVKNHWFVSVAAPTQFRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKYHIFAGTLLGAHLPVRRLISGSQLYSWAGIKKSDLDLT
Ga0126371_135562411	3300021560	Tropical Forest Soil	MARHKVKNRWFVSVAVLKRGRIKAFDRRTETFPTETDAKQFAKEMLSKTEKRYIVAGTLRGGYLPVHRIVSGSQLSSWVGALEPSPFKIRSRSDRR
Ga0207685_101745381	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MARRKVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDEAKQFAKEMLSEKHHIFAGTLLGAHLPVRRLISGSQLYSWAGIKKSDLDLT
Ga0207699_113416371	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	RTSKRMARRKVKNHWFVSVAAPTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRLISGSQLYSWAGIKKSDLDLT
Ga0207700_109400042	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MARRKVKNHNHWFVSVATPKQGRTKGFDRRTETFPTETDAKQFAKEMLSEKRRMKKHHIVAGKLLGAYLPVRRNISGSQLYSWVRENEPRISG
Ga0207860_10208722	3300026921	Tropical Forest Soil	MARRNVKNHWFVSVAVPKQGHAQGFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLYSWVGVKADPTLFRLETGQ
Ga0207762_10189201	3300027063	Tropical Forest Soil	CFEVKNHWFVSVAMPKQRQGAQTFARRTETFPTETDAKQFAKERLSEKHHMEKHHIVAGTLLGAYLPVRRIISGSQLYSWVGVKESDLDLT
Ga0207762_10322562	3300027063	Tropical Forest Soil	RRNVKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLAGNRRIFAGTLLNAHLPGRRLISGSQLYSWVREQDQQPL
Ga0207762_10352081	3300027063	Tropical Forest Soil	MARRNVKNHWFVSVAVPKQGHAQGFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRFISGSQLYSWVRES
Ga0207761_10130094	3300027516	Tropical Forest Soil	MARRNVKNHWFVSVAVPKQGHAQGFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLYSWLGVKADPTLIRLE
Ga0207761_10694231	3300027516	Tropical Forest Soil	MRTKASKRMARCTVKNHWFVSVAVSKQVHGQTFVRRTETFPTETEAKQFAKEMLSKKHRIFAGTLLGAHLPVRRIISGSQLYSWVGVKESDLDLT
Ga0207862_10776822	3300027703	Tropical Forest Soil	MARRSVCFEVKNHWFVSVAMPKQRQGAQTFARRTETFPTETDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLYSWIKES
Ga0170824_1099050921	3300031231	Forest Soil	MARRKVKNHWFVSVAAPTQLRLASPKKSARHTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRFISGSQLYSWAGIKKSDLDLT
Ga0318541_101927062	3300031545	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDSWVGVKESDLDLT
Ga0318541_102846071	3300031545	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETQAKQFAKEMLSEKHHKEKHHIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0318538_108248911	3300031546	Soil	MARRKMDWFERKARRYVKNSWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHIFAGTLLGVHLPLRRFISGS
Ga0310915_105707253	3300031573	Soil	VSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDSWVGVKESDLDLT
Ga0318561_103686112	3300031679	Soil	MKDHWFVSVEAPKQLRRAFPYKLSRQTKTFPTEADAKQFAREMLSEKHRIFAGTLLGVHLPVRRFISGSQLYSWVREQDELPL
Ga0318574_104015572	3300031680	Soil	MARHTVKNHWFVSVELPKQGRIGHTFARRTKSFPTETEAKQFANAMLSETEKHHIVAGTLLGASLPVRRIISGSQLHSWVGLRNPTLI
Ga0318574_108101391	3300031680	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGVHLPLRRFISGSQLHGWAGVKKSDLDLT
Ga0318572_109457312	3300031681	Soil	MARRTVKNHWFVSVAASTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRII
Ga0306917_103582832	3300031719	Soil	MARRTMKNHWFVSFEVPRQGHAKAFFRRTETFSTETDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRFISGPQLHSWVRES
Ga0306917_106897291	3300031719	Soil	MARRKMDWFERKARRYVKNSWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHYIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0306917_113006691	3300031719	Soil	MARRKVINHWFVSVAVPKQGYGPAFVRRTETFPTEADAKQFAKEMLSEKHHVFAGTLLGALLPVRRIISGSQLHSWVGVQDSDLDLT
Ga0306918_105171781	3300031744	Soil	KRMARRTVKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLSEKTLIVAGTLLGVYLPVRRIISGSQLYCWVGEEES
Ga0306918_111384281	3300031744	Soil	MARRKMDWFERKARRYVKNSWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHHIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0318509_106452431	3300031768	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLYSWVGVKADPT
Ga0318546_104989741	3300031771	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDNWVGVKESDLDLT
Ga0318546_111477551	3300031771	Soil	MARRKVKNHWFVSVAVPKQGHAQGFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLYS
Ga0318547_102817972	3300031781	Soil	MARRKVKNHWFVSVAAPKQGRRIKAFDRRTETFPTETDAKQFAKEMLSEKTLIVAGTLLGVYLPVRRIISGSQLYCWVGEEES
Ga0318557_104845971	3300031795	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFSTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDSWVGVKESD
Ga0318565_102812481	3300031799	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHHIVAGTLLGAYLPVRRIISGSQLYSWVREQPL
Ga0318567_105869661	3300031821	Soil	MARRKVKNHWFVSVAVPKQGHAQGFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDSWVGVKESDLDLT
Ga0310917_106668392	3300031833	Soil	KARRYVKNSWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHYIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0318527_104895311	3300031859	Soil	MARHTLRNRWFVSVEMPKHRRGEQTFARQTKTFPTETEAKQFAKEMLSEKHHKEKHHIVAGTLLGVHLPVRRIISGSQLYSWVGER
Ga0306919_110622831	3300031879	Soil	MARRKMDWFERKARRNVKKHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLAENRRIFAGTLLNAHLPGRRLISGSQLYSWVREQDQQPL
Ga0306919_114884701	3300031879	Soil	MARRTMKDHWFVSVEAPKQLRRAFPYKLSRQTKTFPTEADAKQFAREMLSEKHRIFAGTLLGVHLPVRRFISG
Ga0306925_107822321	3300031890	Soil	MARRKVKNRWFVSVAVPERGHGHRFVRRTETFPTETEAKQFAKEMLSEKHHTEKHRILAGTLLGVHLPVRRIISGSQLYSWVGSTNPILI
Ga0306925_114491031	3300031890	Soil	MARRKVDWFERKARRNAKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLAENRRIFAGTLLNAHLPGRRLISGSQLYSWVREQDQQPL
Ga0318551_106865221	3300031896	Soil	MARRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDNWVGVK
Ga0318520_107862462	3300031897	Soil	VDWFERKARRNVKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLSEKHHKEKHHIVAGTLLGAYLPVRRIISGSQLYSWVREQPL
Ga0306923_100478352	3300031910	Soil	MARRKMDWFERKARRYVKNSWFVSVAAPKQVHGQISARQTETFPTETEAKQFAKEMLSEKHHKEKHYIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0306923_125000341	3300031910	Soil	EMPKRSAQTSARRTETFPTETDAKQFAKEMLSEKHHMEKHHIVAGTLPGAHLPVRRIISGRQLHSWVREQDQQSL
Ga0306921_104815643	3300031912	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHHIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0306921_123725471	3300031912	Soil	MARRKVDWFERKARRNVKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLSENRRIFAGTLLNAHLPGRRLISGSQLYSWVREQDQQPL
Ga0310912_101287312	3300031941	Soil	MARRTMKDHWFVSVEAPKQLRRAFPYKLSRQTKTFPTEADAKQFAREMLSEKHRIFAGTLLGVHLPVRRFISGSQLYSWVREQDELPL
Ga0310916_101078471	3300031942	Soil	MARRKVKNHWFVSVAAPKQGRRIKAFDRRTETFPTETDAKQFAKETLSEKRRILAGTLLGVHLPVRRI
Ga0310916_102111763	3300031942	Soil	MARHTVKNHWFVSVELPKQGRIGHTFARRTKSFPTETEAKQFANAMLSETEKHHIVAGTLLGASLPVRRIISGSQLYSWVKES
Ga0310916_106700942	3300031942	Soil	MARRKVDWFERKARRNVKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLAENRRIFAGTLLNAHLPGRRLISGSQLYSWVREQDQQPL
Ga0310916_110864482	3300031942	Soil	KARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHYIVAGTLLGAYLPVRRIISGSQLYSWVREQRL
Ga0310913_104295852	3300031945	Soil	MARRKVKNRWFVSVAVPERGHGHRFVRRTETFPTETEAKQFAKEMLSEKHHTEKHRILAGTLLGVHLPVRRIISGSQLHSWVREQDEQPL
Ga0310913_104476641	3300031945	Soil	MKDHWFVSVEAPKQLRRAFPYKLSRQTKTFPTEADAKQFAREMLSETHRIFAGTLLGVHLPVRRFISGSQLYSWVREQDELPL
Ga0310910_103853731	3300031946	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKHHKEKHYIVAGTLLGAYLPVRRIISGSQLYSWVREQPL
Ga0310909_104647121	3300031947	Soil	MARRKMDWFERKARRYVKNNWFVSVAAPKQVHGQISARRTETFPTETEAKQFAKEMLSEKYLVFAGALLGAHFPVRRIISASQIY
Ga0310909_105324011	3300031947	Soil	MARRKVKNRWFVSVAVPERGHGHRFVRRTETFPTETEAKQFAKEMLSEKHHTEKHRILAGTLLGVHLPVPKPPLRRCWVSLD
Ga0310909_115996181	3300031947	Soil	MARRTVKNHWFVSVAASTQLRLASPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLHSWAG
Ga0306926_1001303113	3300031954	Soil	MKNHWFVSFEVPRQGHAKAFFRRTETFSTETDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRFISGPQLHSWVRES
Ga0306926_113333601	3300031954	Soil	MARRKVKNHWFVSVSVPERGHGHRFVRRTETFPTETDAKQFAKEMLSEKRRILAGTLLGVHLPVRRIISGSQ
Ga0306922_102521252	3300032001	Soil	MARRKMDWFERKARRYVKNSWFVSVAAPKQVHGQISARQTETFPTETEAKQFAKEMLSEKHHKEKHYIVAGTLLGAYLPVRRIISGSQLYSWVREQPL
Ga0318562_102808342	3300032008	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDSWVGVKESDLDLA
Ga0318563_106736461	3300032009	Soil	MASRTVKNHWFVSVALPKQVHGQTFVRRTETFPTEDDAKQFAKEMLSEKHHIFAGTLLGTHLPVRRIISGSQLDSWVGVK
Ga0318524_103172402	3300032067	Soil	MARRTMKNHWFVSFEVPRQGHAKAFFRRTETFSTETDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRFI
Ga0306924_106971442	3300032076	Soil	MARRKVDWFERKARRNVKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLAENRRIFAGTLLNAHLPGRRLISGSQLYSWVRES
Ga0306924_122662141	3300032076	Soil	MRKVKNHWFVSVAVPKERRGAQMFARRTKSFPTEDDAKQFAKEMLSEKHHVFAGTFLGAHLPARRIISGSQLYSWVGVERSDLDLI
Ga0306920_1001196636	3300032261	Soil	MVLPSCLPTKVSKRMARRTVKNHWFVSVEMPKRSAQTSARRTETFPTETDAKQFAKEMLSEKHHMEKHHIVAGTLPGAHLPVRRIISGRQLHSWVREQDQQSL
Ga0306920_1003764052	3300032261	Soil	MARRKVKNHWFVSVAVPKQGYGQQFVRRTETFPTEADAKQFAREMLSEKHHIFAGTLLGALLPVRRIISGPQLHSWVGVKDADLDLT
Ga0306920_1013168903	3300032261	Soil	MARRTVKNHWFVSVAAPTQLRLVSPKKSARQTKTFPTEDDAKQFAKEMLSEKHHIFAGTLLGAHLPVRRIISGSQLHSWAGIKKSDLD
Ga0306920_1030657681	3300032261	Soil	MARRKVKNHWFAQQGHVQRFVRRTETFPTEVDAKQFAKEMLSEKHHIVAGTLLGAHLPVRRFISGSQLYSWVREQDQQL
Ga0310914_112748991	3300033289	Soil	MARRKVKNHWFVSVSVPQRGHGHRFVRRTETFPTETDAKQFAKEMLSEKTLIVAGTLLGVYLPVRRIISGSQLYCWVGEEES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081684

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences