Metagenome / Metatranscriptome Family F081656

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081656
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	59 residues
Representative Sequence	VTRSNLLPWYIGLAIIIVADAVALLLTDEGQAEFFQQTALIVIPVVALGLMFLAFKSQK
Number of Associated Samples	99
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.93 %
% of genes near scaffold ends (potentially truncated)	22.81 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.404 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (19.298 % of family members)
Environment Ontology (ENVO)	Unclassified (34.211 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (34.211 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.32% β-sheet: 0.00% Coil/Unstructured: 43.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01292	Ni_hydr_CYTB	9.65
PF00582	Usp	7.02
PF02668	TauD	5.26
PF12724	Flavodoxin_5	5.26
PF13450	NAD_binding_8	3.51
PF00690	Cation_ATPase_N	3.51
PF00033	Cytochrome_B	2.63
PF00571	CBS	2.63
PF01161	PBP	2.63
PF08240	ADH_N	1.75
PF00702	Hydrolase	1.75
PF00753	Lactamase_B	1.75
PF13683	rve_3	1.75
PF12826	HHH_2	1.75
PF07732	Cu-oxidase_3	0.88
PF10604	Polyketide_cyc2	0.88
PF11101	DUF2884	0.88
PF13531	SBP_bac_11	0.88
PF12840	HTH_20	0.88
PF05284	DUF736	0.88
PF02493	MORN	0.88
PF13671	AAA_33	0.88
PF03372	Exo_endo_phos	0.88
PF00563	EAL	0.88
PF02798	GST_N	0.88
PF01566	Nramp	0.88
PF12728	HTH_17	0.88
PF02696	SelO	0.88
PF00156	Pribosyltran	0.88
PF07681	DoxX	0.88
PF17170	DUF5128	0.88
PF04002	RadC	0.88
PF02525	Flavodoxin_2	0.88
PF00034	Cytochrom_C	0.88
PF00294	PfkB	0.88
PF00072	Response_reg	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	9.65
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	9.65
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	9.65
COG3038	Cytochrome b561	Energy production and conversion [C]	9.65
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	9.65
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.26
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	3.51
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	2.63
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	2.63
COG5489	Uncharacterized conserved protein, DUF736 family	Function unknown [S]	0.88
COG0397	Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O)	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.88
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.88
COG4642	Uncharacterized conserved protein	Function unknown [S]	0.88
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.88
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.88
COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	Defense mechanisms [V]	0.88
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.88
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.88
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.88
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.88
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.40 %
Unclassified	root	N/A	38.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.40 %
Unclassified	root	N/A	38.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.40 %
Unclassified	root	N/A	38.60 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.74 %
Unclassified	root	N/A	38.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.75 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.75 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.40 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	3.51 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.75 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	3.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.63 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.88 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.88 %
sulfur-oxidizing symbionts	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	0.88 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	3.51 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.63 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.75 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.88 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Allochromatium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Allochromatium	0.88 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
sulfur-oxidizing symbionts	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	3.51 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.75 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
Cupriavidus necator	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus necator	0.88 %
Allochromatium vinosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Allochromatium → Allochromatium vinosum	0.88 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
sulfur-oxidizing symbionts	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	3.51 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.75 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.88 %
Cupriavidus necator	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus necator	0.88 %
Allochromatium vinosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Allochromatium → Allochromatium vinosum	0.88 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.88 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.88 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
sulfur-oxidizing symbionts	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_6832_length_1035_cov_6.210628	All Organisms → cellular organisms → Bacteria → Proteobacteria	1067	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11007559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Allochromatium → Allochromatium vinosum	925	Open in IMG/M
3300000956\|JGI10216J12902_100956667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5155	Open in IMG/M
3300000956\|JGI10216J12902_109904416	Not Available	515	Open in IMG/M
3300003319\|soilL2_10132246	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300003465\|P52013CM_1103361	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300004114\|Ga0062593_100550603	Not Available	1085	Open in IMG/M
3300004157\|Ga0062590_101689026	Not Available	644	Open in IMG/M
3300004463\|Ga0063356_101684481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	947	Open in IMG/M
3300004479\|Ga0062595_100865370	Not Available	755	Open in IMG/M
3300004643\|Ga0062591_100903569	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300004778\|Ga0062383_10519214	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300004779\|Ga0062380_10034504	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300005294\|Ga0065705_10614958	Not Available	698	Open in IMG/M
3300005336\|Ga0070680_100349089	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300005364\|Ga0070673_102225014	Not Available	521	Open in IMG/M
3300005434\|Ga0070709_10836562	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300005434\|Ga0070709_11457270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	555	Open in IMG/M
3300005437\|Ga0070710_10097177	All Organisms → cellular organisms → Bacteria → Proteobacteria	1747	Open in IMG/M
3300005444\|Ga0070694_101520880	Not Available	567	Open in IMG/M
3300005459\|Ga0068867_101731926	Not Available	586	Open in IMG/M
3300005526\|Ga0073909_10262688	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300005533\|Ga0070734_10014930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5393	Open in IMG/M
3300005534\|Ga0070735_10742132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	579	Open in IMG/M
3300005886\|Ga0075286_1064389	Not Available	530	Open in IMG/M
3300005952\|Ga0080026_10167041	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300006173\|Ga0070716_101462229	Not Available	557	Open in IMG/M
3300006237\|Ga0097621_100340380	All Organisms → cellular organisms → Bacteria → Proteobacteria	1332	Open in IMG/M
3300006844\|Ga0075428_100339316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614	Open in IMG/M
3300006853\|Ga0075420_101702960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	540	Open in IMG/M
3300006865\|Ga0073934_10063195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3078	Open in IMG/M
3300006865\|Ga0073934_10162629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1570	Open in IMG/M
3300006881\|Ga0068865_100299151	All Organisms → cellular organisms → Bacteria → Proteobacteria	1287	Open in IMG/M
3300006914\|Ga0075436_100275935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus necator	1201	Open in IMG/M
3300006914\|Ga0075436_100708254	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	746	Open in IMG/M
3300009100\|Ga0075418_12958668	Not Available	518	Open in IMG/M
3300009148\|Ga0105243_10086336	All Organisms → cellular organisms → Bacteria → Proteobacteria	2574	Open in IMG/M
3300009181\|Ga0114969_10004272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11328	Open in IMG/M
3300009597\|Ga0105259_1118075	Not Available	637	Open in IMG/M
3300009609\|Ga0105347_1026751	Not Available	2001	Open in IMG/M
3300009609\|Ga0105347_1158377	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300009610\|Ga0105340_1343823	Not Available	659	Open in IMG/M
3300009678\|Ga0105252_10030204	Not Available	1980	Open in IMG/M
3300010371\|Ga0134125_10131196	All Organisms → cellular organisms → Bacteria → Proteobacteria	2790	Open in IMG/M
3300010373\|Ga0134128_10582762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	1245	Open in IMG/M
3300010399\|Ga0134127_11037961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881	Open in IMG/M
3300010400\|Ga0134122_10000425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28207	Open in IMG/M
3300011119\|Ga0105246_12490730	Not Available	509	Open in IMG/M
3300011409\|Ga0137323_1009937	All Organisms → cellular organisms → Bacteria	2217	Open in IMG/M
3300011414\|Ga0137442_1093022	Not Available	653	Open in IMG/M
3300011420\|Ga0137314_1146801	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300011428\|Ga0137456_1195518	Not Available	547	Open in IMG/M
3300011430\|Ga0137423_1120545	Not Available	785	Open in IMG/M
3300011436\|Ga0137458_1104013	Not Available	818	Open in IMG/M
3300011440\|Ga0137433_1201220	Not Available	653	Open in IMG/M
3300011441\|Ga0137452_1168144	Not Available	740	Open in IMG/M
3300011442\|Ga0137437_1062835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300011442\|Ga0137437_1295753	Not Available	553	Open in IMG/M
3300011444\|Ga0137463_1052738	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300011445\|Ga0137427_10060968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1496	Open in IMG/M
3300011445\|Ga0137427_10083542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1279	Open in IMG/M
3300012469\|Ga0150984_101814522	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300014271\|Ga0075326_1123162	Not Available	743	Open in IMG/M
3300014879\|Ga0180062_1054789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	862	Open in IMG/M
3300014880\|Ga0180082_1074951	Not Available	743	Open in IMG/M
3300015077\|Ga0173483_10999992	Not Available	501	Open in IMG/M
3300015371\|Ga0132258_12843977	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300017936\|Ga0187821_10118183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	986	Open in IMG/M
3300018083\|Ga0184628_10012289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4146	Open in IMG/M
3300018083\|Ga0184628_10075596	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1716	Open in IMG/M
3300018084\|Ga0184629_10000686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14730	Open in IMG/M
3300018084\|Ga0184629_10001852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8311	Open in IMG/M
3300018084\|Ga0184629_10002640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6816	Open in IMG/M
3300018422\|Ga0190265_10042962	All Organisms → cellular organisms → Bacteria → Proteobacteria	3875	Open in IMG/M
3300018469\|Ga0190270_10854542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	923	Open in IMG/M
3300018469\|Ga0190270_12934034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	539	Open in IMG/M
3300018476\|Ga0190274_10158638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1923	Open in IMG/M
3300018476\|Ga0190274_11873747	Not Available	695	Open in IMG/M
3300019263\|Ga0184647_1016999	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300019263\|Ga0184647_1325319	Not Available	867	Open in IMG/M
3300019377\|Ga0190264_10132818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1245	Open in IMG/M
3300020068\|Ga0184649_1380917	Not Available	764	Open in IMG/M
3300021090\|Ga0210377_10258569	Not Available	1083	Open in IMG/M
3300021445\|Ga0182009_10226154	Not Available	920	Open in IMG/M
3300021519\|Ga0194048_10063068	Not Available	1471	Open in IMG/M
3300024331\|Ga0247668_1000753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7591	Open in IMG/M
3300025310\|Ga0209172_10517778	Not Available	546	Open in IMG/M
3300025898\|Ga0207692_11018587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	547	Open in IMG/M
3300025906\|Ga0207699_10710926	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300025912\|Ga0207707_10111666	All Organisms → cellular organisms → Bacteria → Proteobacteria	2390	Open in IMG/M
3300025916\|Ga0207663_11332996	Not Available	578	Open in IMG/M
3300025927\|Ga0207687_11145618	Not Available	668	Open in IMG/M
3300025930\|Ga0207701_10915673	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300025934\|Ga0207686_10972428	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	688	Open in IMG/M
3300025935\|Ga0207709_10158791	Not Available	1574	Open in IMG/M
3300025938\|Ga0207704_11718586	Not Available	539	Open in IMG/M
3300025939\|Ga0207665_11349206	Not Available	568	Open in IMG/M
3300026217\|Ga0209871_1110076	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300027513\|Ga0208685_1009958	All Organisms → cellular organisms → Bacteria	2325	Open in IMG/M
3300027513\|Ga0208685_1012911	Not Available	1989	Open in IMG/M
3300027754\|Ga0209596_1018824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4203	Open in IMG/M
3300027826\|Ga0209060_10011182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5275	Open in IMG/M
3300027831\|Ga0209797_10055982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1752	Open in IMG/M
3300027843\|Ga0209798_10169951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1086	Open in IMG/M
3300027843\|Ga0209798_10446551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	598	Open in IMG/M
3300027907\|Ga0207428_10277167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1245	Open in IMG/M
3300031679\|Ga0318561_10770988	Not Available	528	Open in IMG/M
3300031716\|Ga0310813_11010142	Not Available	759	Open in IMG/M
3300031938\|Ga0308175_100983501	Not Available	932	Open in IMG/M
3300031942\|Ga0310916_11019468	Not Available	690	Open in IMG/M
3300032261\|Ga0306920_102592941	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300033433\|Ga0326726_10493191	All Organisms → cellular organisms → Bacteria → Proteobacteria	1171	Open in IMG/M
3300033513\|Ga0316628_100328566	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300034149\|Ga0364929_0195784	Not Available	667	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.33%
Host-Associated	Host-Associated	16.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.61%
Aquatic	Environmental → Aquatic	37.72%
Plants	Host-Associated → Plants	16.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.86%
Sediment	Environmental → Aquatic → Sediment	23.68%
Freshwater	Environmental → Aquatic → Freshwater	11.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.40%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.39%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.63%
Peat	Environmental → Terrestrial → Peat	0.88%
Floodplain	Environmental → Terrestrial → Floodplain	0.88%
Roots	Host-Associated → Plants → Roots	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	23.68%
Loam	Environmental → Terrestrial → Soil → Loam	9.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.39%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.51%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.51%
Lake	Environmental → Aquatic → Freshwater → Lake	2.63%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	2.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	23.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.39%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.39%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.51%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	19.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.26%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	4.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.39%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.51%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.51%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.63%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.75%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.75%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.88%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.88%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.88%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021519	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_03066270	2140918013	Soil	VEVVVTRSSLPPWYIGLAIIIVADAVALLLTDEGEAEFFQQTALIVIPVVSLGLMYLVFKSQK
ICChiseqgaiiFebDRAFT_110075592	3300000363	Soil	VEVVVTRSSLLPWYIGLAIIIVADAVALLLTDEGEAEFFQQTALIVIPVVSLGLMYLVFKSQK*
JGI10216J12902_1009566675	3300000956	Soil	MTRSNLLPWYIGLAIIVVADAVALLLTDEGPAEFFQQTALVVIPIVALGLMFLTFKSQR*
JGI10216J12902_1099044162	3300000956	Soil	MTRSNLLPWYIGLVVIVVADAVALLLTDEGPAEFFQQTALVVIPIVALGLMFLTFKSQR*
soilL2_101322462	3300003319	Sugarcane Root And Bulk Soil	MVKAETVMVRNRFLPWFIGLAIIVVGDAIALLMTDEGPPELAQQTALVVIPMVALVITFLMFKSQR*
P52013CM_11033611	3300003465	Ore Pile And Mine Drainage Contaminated Soil	VTRSNLLPWYIGLAIIIVADAVALLMTDEGDAEFFQQTALTVIPIVSLGLMYLVFKSQK*
Ga0062593_1005506031	3300004114	Soil	MERSRYLPWFIGLLIIIAADGYLLYFRTDEGAAEFAQQTAMVVIPIVALTLMFLMFRSQK
Ga0062590_1016890262	3300004157	Soil	MLRSSRYFPWFIGLAIIVIGDAIALLMTDEGAPELAQQSTLVAVPIVALALMFLMFKSQK
Ga0063356_1016844812	3300004463	Arabidopsis Thaliana Rhizosphere	LAIIVIADAVALLLTDEGDAEFFQQTALVVIPVVALGLMYLVFKSQK*
Ga0062595_1008653702	3300004479	Soil	VGRNRFLPWFIGLAIIIVADGYLLYFRTDEGAAELAQQTALIVIPIVALGLMFLVFKSQK
Ga0062591_1009035691	3300004643	Soil	VGRNRFLPWFIGLAIIIVADGYLLYFRTDEGAAELAQQTAMIVIPIVALGLMFLVFKSQK
Ga0062383_105192141	3300004778	Wetland Sediment	GCASPMEVAVTRSNLLPWYIGLVIIIVADAVALLRTDEGQAEFFQQTALIVIPIVALGLMFLVFKSQK*
Ga0062380_100345042	3300004779	Wetland Sediment	MEVAVTRSNLLPWYIGLVIIIVADAVALLRTDEGQAEFFQQTALIVIPIVALGLMFLVFKSQK*
Ga0065705_106149582	3300005294	Switchgrass Rhizosphere	MERNRYMPWIIGAIIIVIADGILLFLTDEGQAELAQQAALVAIPVVGLALMFLMFKSQK*
Ga0070680_1003490891	3300005336	Corn Rhizosphere	MERNRLLPWYIGLVIIVACSGYLLYFRTDEGAAELAQQTALIVIPIVALALMFFTFKSQK
Ga0070673_1022250141	3300005364	Switchgrass Rhizosphere	MERSRFLPFYIGLAIIIFADAYMLYFQTDEGRAELAQQTALIAIPVVALGLMFLMFKSQK
Ga0070709_108365622	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RSRFLPWFIGLAIIIVADGYLLYFRTDEGAAELAQQSAMVVIPIVALGLMFLTFKSQK*
Ga0070709_114572701	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MEVTVQRNSLLPWYIGLIIIIIADGYLLAFRTDEGAAEFAQQSAMIAIPVVALALMFLMFRSQK*
Ga0070710_100971772	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKRCNLLAEFSVTRNRLLPWYIGLAIIILADGYLLAFRTDEGAAEFAQQSAMVVIPVVALALMFLMFRSQK*
Ga0070694_1015208801	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VTRSSLLPWYIGLAIIIVADAVALLLTDEGEAEFFQQTALIVIPVVSLGLMYLVFKSQK*
Ga0068867_1017319262	3300005459	Miscanthus Rhizosphere	MTRSNLLPWYIGLVIIVVADAVALLLTDEGPAEFFQQTALLVIPVVALGLMFLTFKSQR*
Ga0073909_102626881	3300005526	Surface Soil	IVMERNRFLPWFIGLAIIIVADGYLLYFRTDEGAAELAQQSAMVVIPIVALGLMFLTFKSQK*
Ga0070734_100149307	3300005533	Surface Soil	MERSRFFPWFIGLPIIVAADGYVLYFRTDEAAEFAQQTAMIVIPVVALALMFLMFRGQK*
Ga0070735_107421322	3300005534	Surface Soil	VPRNRFLPLYIGLVIIIIADGYLLAFRTDEGAAEFAQQSAMVAIPVVALFLMFLMFKSQK
Ga0075286_10643891	3300005886	Rice Paddy Soil	MMRSNLLPWYIGLIIIIIADSVALLLTDEGPAEFFQQTALVVIPVIALGLM
Ga0080026_101670411	3300005952	Permafrost Soil	MTLEKETAVTRNRFLPWYIGLAIIILADGYLLYFRTDEGAAELAQQSAMVAIPIVALALMFLTFKSQK*
Ga0070716_1014622291	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	WFIGLAIIIVADGYLLYFRTDEGAAELAQQSAMVVIPIVALGLMFLTFKSQK*
Ga0097621_1003403803	3300006237	Miscanthus Rhizosphere	MERSRYLPFYIGLAIIIFADAYMLYFQTDEGRAELAQQTALIAIPVVALGLMFLMFKSQK
Ga0075428_1003393163	3300006844	Populus Rhizosphere	MTRSNLLPWYIGLAIIIIADSVALLLTDEGPAEFFQQTALVVIPVVALGLMFLTFKSQR*
Ga0075420_1017029601	3300006853	Populus Rhizosphere	MTRSNLLPWYIGLAIIVVADGVALLLTDEGQAEFFQQTALVVIPVVALGLMYLVFKSQK*
Ga0073934_100631954	3300006865	Hot Spring Sediment	MTRSNLLPWYIGLAIIIVADAVALLLTDEGPAEFFQQTALVVIPVVALALLFLVFKSQR*
Ga0073934_101626293	3300006865	Hot Spring Sediment	MTRSNLLPWYIGLAIIILADAVALLLTDEGPAEFFQQTALVVIPVVALALMFLVFKSQK*
Ga0068865_1002991512	3300006881	Miscanthus Rhizosphere	VTRSNLLPWYIGLAIIIVADAIALLLTDEGQAEFFQQTALVVIPVVALGLMYLVFKSQK*
Ga0075436_1002759352	3300006914	Populus Rhizosphere	MERSRFLPWYIGLAIIIVADGYLLLMTDEGKAEFAQQTALIMIPVVALALMFLVFRSQK*
Ga0075436_1007082542	3300006914	Populus Rhizosphere	MERSRFFPWFIGLAIIVLADGYLLLMTDEGKAELAQQAALITIPVVALALMFLVFKSQK*
Ga0075418_129586683	3300009100	Populus Rhizosphere	VMLRSSRYFPWFIGLAIIVIGDAIALLMTDEGAPELAQQSTLVAVPIVALALMFLMFKSQK*
Ga0105243_100863363	3300009148	Miscanthus Rhizosphere	MERSRYLPWYIGLAIIILADAFLLLRTDEGAAELAQQTALIVIPVVALTLMFLVFKSQK*
Ga0114969_100042728	3300009181	Freshwater Lake	MEIFMQRNRYLPWFIGLAIIVVADGILLLLTDEGQAELAQQAALVAIPVVGLALMFLMFKSQK*
Ga0105259_11180751	3300009597	Soil	MVRNRFTPWFIGLAIIIVGDAIALLMTDEGPAELAQQTALIVIPLVALGLMFLMFKSQK*
Ga0105347_10267512	3300009609	Soil	MEVVVTRSNLLPWYIGLAIIIVADAVALLLTDEGEAEFFQQTALIVIPLVSLGLMYLVFKSQK*
Ga0105347_11583772	3300009609	Soil	MTRSNLLPWYIGLVIIVVADAVALLLTDEGPAEFFQQTALVVIPIVALGLMFLTFKSQR*
Ga0105340_13438232	3300009610	Soil	MTRSNLLPWYIGLAIIIVADSVALLLTDEGPAEFFQQTALVVIPVVALGLMFLTFKSQR*
Ga0105252_100302042	3300009678	Soil	MILMRNRYLPWFIGLMIIVIGDGIALLLTDEGPAELSQQTTLIVIPIVALAIMFLMFKSQK*
Ga0134125_101311963	3300010371	Terrestrial Soil	MPWTIGAIIIIIADGILLLLTDEGQAELAQQAALVAIPVVGLALMFLIFKSQR*
Ga0134128_105827622	3300010373	Terrestrial Soil	MEIRVQRDRLLPWYIGLGIIVLADGYLLAFRTDEGAAEFAQQSAMVVIPIVALALMFLMFRSQK*
Ga0134127_110379612	3300010399	Terrestrial Soil	MPWIIGAIIIVIADGILLFLTDEGQAELAQQAALVAIPVVGLALMFLMFKSQK*
Ga0134122_1000042512	3300010400	Terrestrial Soil	MERSRYLPWYIGLAIIILADAFLLLRTDEGAAELAQQTALIVIPTVALALMFLVFKSQR*
Ga0105246_124907301	3300011119	Miscanthus Rhizosphere	MPWIIGAIIIVIADGILLLLTDEGQAELAQQTALIAIPVVGLALMFLMFKSQK*
Ga0137323_10099375	3300011409	Soil	VTRSNLLPWYIGLAIIIVADSVALLLTDEGDAEFFQQTALVVIPVVALGLMYLVFKSQK*
Ga0137442_10930222	3300011414	Soil	LKKESVVGRNRFMPWFIGLAIIIVGDSIALLLTDEGPAELAQQTALIVIPLVALGLMFLMFKSQK*
Ga0137314_11468011	3300011420	Soil	NLLPWYIGLAIIIVADSVALLLTDEGDAEFFQQTALVVIPVVALGLMYLVFKSQK*
Ga0137456_11955182	3300011428	Soil	MVRNRFMPWFVGLASIIVGDAIALLMTDEGPAELAQQTALIVIPLVALGLMFLMFKSQK*
Ga0137423_11205452	3300011430	Soil	MWFNRESVMVRNRLMPWFIGLAIIVVGDAIALLMTDEGPAELAQQTALIVIPLVALGLMFLMFKSQK*
Ga0137458_11040132	3300011436	Soil	MVRNRFMPWFIGLAIIIVGDSIALLLTDEGPAELAQQTALIVIPLVALGLMFLMFKSQK*
Ga0137433_12012202	3300011440	Soil	MVRNRFLPWFVGLAIIVVGDAIALLMTDEGPAELAQQTALIVIPLVALALMFLMFKSQN*
Ga0137452_11681442	3300011441	Soil	MTWLDQTEVAMTRSNLLPWYIGLGIIIVLDGIALLLTDEGPAEFFQQTTLVAIPVVALGLMYFVFKSQK*
Ga0137437_10628351	3300011442	Soil	VERSRFLPWFIGLAIIIIADGYLLYFRTDEGAAELAQQSAMVVIPIVALSLMFLTFKSQK
Ga0137437_12957532	3300011442	Soil	MQRNRYLPWFIGLAIIVIGDGIALLLTDEGPAELSQQTTLIVIPIVALAITFLMFKSQK*
Ga0137463_10527382	3300011444	Soil	VVHSRFLPWFIGLAIIIVADGYLLYFRTDEGAAELAQQSAMVVIPIVALGLMFLMFKSQK
Ga0137427_100609682	3300011445	Soil	MESIMVRNRFMPWFIGLAIIIVGDAIALLMTDEGPAELAQQTALIVIPLVALGLMFLMFKSQK*
Ga0137427_100835421	3300011445	Soil	VTRSNLLPWYIGLAIIIVADSVALLLTDEGDAEFFQQTALVVIPVVALGLMY
Ga0150984_1018145221	3300012469	Avena Fatua Rhizosphere	MERSRYFPWFTGLLIIIAADGYLLYFRTDEGAAEFAQQTAMIVIPIVALGLMLLMFKSQK
Ga0075326_11231622	3300014271	Natural And Restored Wetlands	VRRSNLLPWYIGLAIIIVADAVALLLTDEGPAEFFQQTALIVIPVVALGLMYLMFKSQK*
Ga0180062_10547893	3300014879	Soil	WFIGLMIIVIGDGIALLLTDEGPAELSQQTTLIVIPIVALAIMFLMFKSQK*
Ga0180082_10749512	3300014880	Soil	SVMVRNRFMPWFIGLAIIIVGDSIALLMTDEGPAELAQQTALVVIPLVALGLMFLMFKSQK*
Ga0173483_109999922	3300015077	Soil	MEVVVTRSNLLPWYIGLAIIIVADAIALLLTDEGQAEFFQQTALVVIPVVALGLMYLVFKSQK*
Ga0132258_128439772	3300015371	Arabidopsis Rhizosphere	MERNRLLSWYIGLVIIVACSGYLLYFRTDEGAAELAQQTALIVIPIVALALMFLTFKSQK
Ga0187821_101181833	3300017936	Freshwater Sediment	VQRNNLLPWYIGLIIIIVADGYLLAFRTDEGAAEFAQQSAMIAIPVVALALMFLMFRSQK
Ga0184628_100122892	3300018083	Groundwater Sediment	VTRSNLLPWYIGLAIIIVADAVALLLTDEGKAEFFQQTALIVIPMVALGLMFLVFKSQK
Ga0184628_100755962	3300018083	Groundwater Sediment	VERNRFLPFYIGLAIIVVADAYLLYFQTDEGRAELAQQTALIVIPVVALGLMFLMFKSQK
Ga0184629_1000068615	3300018084	Groundwater Sediment	MRNRYLPWFIGLMIIVIGDGIALLLTDEGPAELSQQTTLIVIPIVALAIMFLMFKSQK
Ga0184629_100018527	3300018084	Groundwater Sediment	VTRSNLLPWYIGLAIIIVADSVALLLTDEGDAEFFQQTALVVIPVVALGLMYLVFKSQK
Ga0184629_100026403	3300018084	Groundwater Sediment	MTRSNLLPWYIGLAIIIVADSVALLLTDEGPAEFFQQTALVVIPVVALGLMFLTFKSQR
Ga0190265_100429624	3300018422	Soil	VTRSNLLPWYIGLAIIIVADIVALLLTDEGDAEFFQQTALIVIPMVSLVLMYLVFKSQK
Ga0190270_108545422	3300018469	Soil	MVRNRFLPWFIGLAIIVVGDAIALLMTDEGPAELAQQTALVVIPVVALAIMFLMFKSQK
Ga0190270_129340341	3300018469	Soil	MTRGNLLPWYIGLVIIVIADAVALLLTDEGPAEFFQQTALVVIPVVALGLMFLTFKSQR
Ga0190274_101586383	3300018476	Soil	MEVVVTRGNLFPWYIGLAIIIVADAVALLMTDEGEAEFFQQTALIVIPVVSLGLMYLVFKSQK
Ga0190274_118737472	3300018476	Soil	MLRSSRYLPWFIGLAIILIGDAIALLMTDEGAPELAQQSTLVAVPIVALALMFLMFKSQK
Ga0184647_10169992	3300019263	Groundwater Sediment	EVVVTRSNLLPWYIGLAIIIVADAVALLLTDEGKAEFFQQTALIVIPMVALGLMFLVFKSQK
Ga0184647_13253191	3300019263	Groundwater Sediment	PWYIGLAIIIAADAIALLLTDEGQAEFFQQTALIVIPVVALGLMYLVFKSQK
Ga0190264_101328182	3300019377	Soil	MVRNRYMPWFIGLAIIIVGDAIALLMTDEGPAELAQQTALIVIPLVALGLMFLMFKSQR
Ga0184649_13809172	3300020068	Groundwater Sediment	VTRSNLLPWYIGLAIIIVADAVALLLTDEGQAEFFQQTALIVIPVVALGLMFLAFKSQK
Ga0210377_102585692	3300021090	Groundwater Sediment	VVRNRFMPWFIGLAVIIVGDSIALLLTDEGPAELAQQTALIVIPLVALGLMFLMFKSQK
Ga0182009_102261542	3300021445	Soil	MERSRYLPWFIGLLIIVAADGYLLYFRTDEGAAEFAQQTAMIVIPIVALTLM
Ga0194048_100630682	3300021519	Anoxic Zone Freshwater	VIRNRFLPWYIGAAIIVVADSILIFLTDEGQAEMAQQAALVVIPVVGLSLMYLMFKSQK
Ga0247668_10007537	3300024331	Soil	MERNRYLPWFIGVAIIVVVDGILLLLTDEGQAELAQQAALVAVPVVGLGLMFLVFKSQK
Ga0209172_105177781	3300025310	Hot Spring Sediment	MTRSNLLPWYIGLAIIIVADAVALLLTDEGPAEFFQQTALVVIPVVALALLFLVFKSQR
Ga0207692_110185871	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	WYIGLAIIILADGYLLAFRTDEGAAEFAQQSAMVVIPVVALALMFLMFRSQK
Ga0207699_107109261	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	IVMERNRFLPWFIGLAIIIVADGYLLYFRTDEGAAELAQQSAMVVIPIVALGLMFLTFKSQK
Ga0207707_101116663	3300025912	Corn Rhizosphere	MERNRLLPWYIGLVIIVACSGYLLYFRTDEGAAELAQQTALVVIPIVALALMFLTFKSQK
Ga0207663_113329961	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LAEFSVTRNRLLPWYIGLAIIILADGYLLAFRTDEGAAEFAQQSAMVVIPVVALALMFLMFRSQK
Ga0207687_111456181	3300025927	Miscanthus Rhizosphere	MERSRYFPWFIGLLIIIAADGYLLYFRTDEGAAEFAQQTAMIVIPIVALGLMFLMFKSQK
Ga0207701_109156731	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VTRSSLLPWYIGLAIIIVADAVALLLTDEGEAEFFQQTALIVIPVVSLGLMYLVFKSQK
Ga0207686_109724281	3300025934	Miscanthus Rhizosphere	MERSRYFPWFIGLLIIIAADGYLLYFRTDEGAAEFAQQTAMIVIPIVALALMFLMFKSQK
Ga0207709_101587911	3300025935	Miscanthus Rhizosphere	MERSRYLPWYIGLAIIILADAFLLLRTDEGAAELAQQTALIVIPVVALTLMFLVFKSQK
Ga0207704_117185862	3300025938	Miscanthus Rhizosphere	VTRSNLLPWYIGLAIIIVADAIALLLTDEGQAEFFQQTALVVIPVVALGLMYLVFKSQK
Ga0207665_113492061	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	WFIGLAIIIVADGYLLYFRTDEGAAELAQQSAMVVIPIVALGLMFLTFKSQK
Ga0209871_11100761	3300026217	Permafrost Soil	MTLEKETAVTRNRFLPWYIGLAIIILADGYLLYFRTDEGAAELAQQSAMVAIPIVALALMFLTFKSQ
Ga0208685_10099582	3300027513	Soil	MTRSNLLPWYIGLVIIVVADAVALLLTDEGPAEFFQQTALVVIPIVALGLMFLTFKSQR
Ga0208685_10129112	3300027513	Soil	VTRSNLLPWYIGLAIIIVADAVALLLTDEGEAEFFQQTALIVIPLVSLGLMYLVFKSQK
Ga0209596_10188245	3300027754	Freshwater Lake	MQRNRYLPWFIGLAIIVVADGILLLLTDEGQAELAQQAALVAIPVVGLALMFLMFKSQK
Ga0209060_100111827	3300027826	Surface Soil	MERSRFFPWFIGLPIIVAADGYVLYFRTDEAAEFAQQTAMIVIPVVALALMFLMFRGQK
Ga0209797_100559822	3300027831	Wetland Sediment	MEVAVTRSNLLPWYIGLVIIIVADAVALLRTDEGQAEFFQQTALIVIPIVALGLMFLVFKSQK
Ga0209798_101699512	3300027843	Wetland Sediment	MRNRYLPWFIGLAIIVIGDGIALLLTDEGPAEFSQQTTLIVIPIVALAIMFLMFRSQK
Ga0209798_104465512	3300027843	Wetland Sediment	GCASPMEVAVTRSNLLPWYIGLVIIIVADAVALLRTDEGQAEFFQQTALIVIPIVALGLMFLVFKSQK
Ga0207428_102771671	3300027907	Populus Rhizosphere	LLPWYIGLAIIIIADSVALLLTDEGPAEFFQQTALVVIPVVALGLMFLTFKSQR
Ga0318561_107709882	3300031679	Soil	VERSRFPPWYIGLAIIIAADGYLLFLTDEGKAELAQQAALIVIPVVALALMYLVFKSQK
Ga0310813_110101421	3300031716	Soil	MERSRYFPWFIGLLIIIAADGYLLYFRTDEGAAEFAQQTAMIVIPIVALGLMF
Ga0308175_1009835012	3300031938	Soil	MPWTIGAIIIIIADGILLLLTNEGQAELAQQAALVAIPVVGLALMFLMFRRT
Ga0310916_110194682	3300031942	Soil	MYSAKGKTVVERSRFPPWYIGLAIIIAADGYLLFLTDEGKAELAQQAALIVIPVVALALMYLVFKSQK
Ga0306920_1025929411	3300032261	Soil	VERSRFPPWYIGLAIIIAADGYLLFLTDEGKAELAQQAALIVIPVVALALMYLVFKS
Ga0326726_104931912	3300033433	Peat Soil	MERNKFLPWFVGAGIIIVGDAIALLLTDEGPAELAQQTALIVIPLVALGLMYLMFKSQKQ
Ga0316628_1003285663	3300033513	Soil	MGTPRNRFLSWYIGLVIIIVADGYLLLKTDEGSAELAQQSALIAIPVVALALMYLVFKSQ
Ga0364929_0195784_444_608	3300034149	Sediment	MLPWFVAATIIVFGDAIALLLTDEGPAELAQQTALVVIPLVALGLTYLTFRSQE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081656

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences