Metagenome / Metatranscriptome Family F081606

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081606
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	44 residues
Representative Sequence	MASIRTYEGWWDLSLIDERNERPLLSAFVAVIAVWATAVLLTLV
Number of Associated Samples	78
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.30 %
% of genes near scaffold ends (potentially truncated)	35.09 %
% of genes from short scaffolds (< 2000 bps)	87.72 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.544 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.439 % of family members)
Environment Ontology (ENVO)	Unclassified (38.596 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.789 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.61% β-sheet: 0.00% Coil/Unstructured: 51.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00805	Pentapeptide	7.89
PF03473	MOSC	3.51
PF01161	PBP	2.63
PF00293	NUDIX	1.75
PF06707	DUF1194	1.75
PF01609	DDE_Tnp_1	1.75
PF02534	T4SS-DNA_transf	1.75
PF02733	Dak1	0.88
PF01544	CorA	0.88
PF13676	TIR_2	0.88
PF13683	rve_3	0.88
PF02690	Na_Pi_cotrans	0.88
PF01526	DDE_Tnp_Tn3	0.88
PF13560	HTH_31	0.88
PF03629	SASA	0.88
PF03992	ABM	0.88
PF03150	CCP_MauG	0.88
PF13302	Acetyltransf_3	0.88
PF00011	HSP20	0.88
PF02771	Acyl-CoA_dh_N	0.88
PF01593	Amino_oxidase	0.88
PF07784	DUF1622	0.88
PF00400	WD40	0.88
PF11972	HTH_13	0.88
PF00196	GerE	0.88
PF05532	CsbD	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	7.89
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	2.63
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.75
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.75
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.75
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.75
COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	Intracellular trafficking, secretion, and vesicular transport [U]	1.75
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.75
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.75
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.88
COG4828	Uncharacterized membrane protein	Function unknown [S]	0.88
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.88
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG2376	Dihydroxyacetone kinase	Carbohydrate transport and metabolism [G]	0.88
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.88
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1283	Na+/phosphate symporter	Inorganic ion transport and metabolism [P]	0.88
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
All Organisms	root	All Organisms	32.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
cellular organisms	root	All Organisms → cellular organisms	32.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.54 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	3.51 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.75 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.88 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	2.63 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.75 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	0.88 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.88 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2.63 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.75 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.88 %
Azospirillum doebereinerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum doebereinerae	0.88 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.88 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.54 %
Rhizobium leguminosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1.75 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.75 %
Rhizobium laguerreae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium laguerreae	0.88 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.88 %
Azospirillum doebereinerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum doebereinerae	0.88 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.88 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10020468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1735	Open in IMG/M
3300003368\|JGI26340J50214_10139382	Not Available	609	Open in IMG/M
3300004152\|Ga0062386_100444962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1048	Open in IMG/M
3300005437\|Ga0070710_10530599	Not Available	810	Open in IMG/M
3300005712\|Ga0070764_10078977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1729	Open in IMG/M
3300005764\|Ga0066903_108250473	Not Available	533	Open in IMG/M
3300006175\|Ga0070712_100857292	Not Available	782	Open in IMG/M
3300006176\|Ga0070765_100594532	Not Available	1043	Open in IMG/M
3300006176\|Ga0070765_101936605	Not Available	552	Open in IMG/M
3300009174\|Ga0105241_12563112	Not Available	511	Open in IMG/M
3300010339\|Ga0074046_10078873	All Organisms → cellular organisms → Bacteria → Proteobacteria	2142	Open in IMG/M
3300010339\|Ga0074046_10162797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1418	Open in IMG/M
3300011120\|Ga0150983_13116875	Not Available	662	Open in IMG/M
3300012951\|Ga0164300_10692414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	616	Open in IMG/M
3300015371\|Ga0132258_13767971	Not Available	1033	Open in IMG/M
3300016294\|Ga0182041_11071089	Not Available	731	Open in IMG/M
3300016294\|Ga0182041_11694839	Not Available	585	Open in IMG/M
3300016294\|Ga0182041_11724072	Not Available	580	Open in IMG/M
3300016319\|Ga0182033_10793738	Not Available	834	Open in IMG/M
3300016371\|Ga0182034_10433370	Not Available	1085	Open in IMG/M
3300016404\|Ga0182037_10899971	Not Available	767	Open in IMG/M
3300016404\|Ga0182037_10925726	Not Available	757	Open in IMG/M
3300016404\|Ga0182037_10959700	Not Available	743	Open in IMG/M
3300016404\|Ga0182037_11563023	Not Available	586	Open in IMG/M
3300017955\|Ga0187817_10282651	Not Available	1058	Open in IMG/M
3300017959\|Ga0187779_10036598	All Organisms → cellular organisms → Bacteria → Proteobacteria	2838	Open in IMG/M
3300017959\|Ga0187779_10550367	Not Available	768	Open in IMG/M
3300017959\|Ga0187779_10948803	Not Available	594	Open in IMG/M
3300017966\|Ga0187776_11219769	Not Available	565	Open in IMG/M
3300017972\|Ga0187781_10082240	All Organisms → cellular organisms → Bacteria → Proteobacteria	2225	Open in IMG/M
3300017972\|Ga0187781_10882888	Not Available	651	Open in IMG/M
3300017972\|Ga0187781_11069298	Not Available	591	Open in IMG/M
3300017972\|Ga0187781_11301000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	536	Open in IMG/M
3300017973\|Ga0187780_10366116	Not Available	1020	Open in IMG/M
3300018058\|Ga0187766_10335193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	987	Open in IMG/M
3300018060\|Ga0187765_10804805	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300018062\|Ga0187784_11404571	Not Available	553	Open in IMG/M
3300018064\|Ga0187773_10636678	Not Available	657	Open in IMG/M
3300018086\|Ga0187769_10099315	Not Available	2090	Open in IMG/M
3300018086\|Ga0187769_10245499	Not Available	1331	Open in IMG/M
3300018086\|Ga0187769_10850370	Not Available	690	Open in IMG/M
3300018086\|Ga0187769_11043026	Not Available	619	Open in IMG/M
3300020579\|Ga0210407_10481469	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300020582\|Ga0210395_10114028	All Organisms → cellular organisms → Bacteria	2003	Open in IMG/M
3300021168\|Ga0210406_10641330	Not Available	825	Open in IMG/M
3300021372\|Ga0213877_10106918	Not Available	855	Open in IMG/M
3300021403\|Ga0210397_10150189	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300021406\|Ga0210386_10085621	All Organisms → cellular organisms → Bacteria	2561	Open in IMG/M
3300021406\|Ga0210386_10153061	Not Available	1929	Open in IMG/M
3300021420\|Ga0210394_11822022	Not Available	507	Open in IMG/M
3300021441\|Ga0213871_10093095	Not Available	875	Open in IMG/M
3300021560\|Ga0126371_13859021	Not Available	505	Open in IMG/M
3300022711\|Ga0242674_1052825	Not Available	563	Open in IMG/M
3300022726\|Ga0242654_10209623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	681	Open in IMG/M
3300027505\|Ga0209218_1067866	Not Available	731	Open in IMG/M
3300027505\|Ga0209218_1141850	Not Available	508	Open in IMG/M
3300027812\|Ga0209656_10063586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2033	Open in IMG/M
3300027824\|Ga0209040_10017732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4724	Open in IMG/M
3300027824\|Ga0209040_10157855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium laguerreae	1218	Open in IMG/M
3300027824\|Ga0209040_10171686	Not Available	1151	Open in IMG/M
3300027825\|Ga0209039_10157989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	941	Open in IMG/M
3300027884\|Ga0209275_10293660	Not Available	901	Open in IMG/M
3300027895\|Ga0209624_10049935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2677	Open in IMG/M
3300027895\|Ga0209624_10052427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	2613	Open in IMG/M
3300030740\|Ga0265460_12125239	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300031545\|Ga0318541_10570659	Not Available	633	Open in IMG/M
3300031545\|Ga0318541_10630537	Not Available	599	Open in IMG/M
3300031572\|Ga0318515_10685380	Not Available	543	Open in IMG/M
3300031668\|Ga0318542_10762385	Not Available	507	Open in IMG/M
3300031708\|Ga0310686_100711671	All Organisms → cellular organisms → Bacteria	15755	Open in IMG/M
3300031708\|Ga0310686_119552634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12733	Open in IMG/M
3300031719\|Ga0306917_10530754	Not Available	925	Open in IMG/M
3300031770\|Ga0318521_10787234	Not Available	579	Open in IMG/M
3300031794\|Ga0318503_10316910	Not Available	507	Open in IMG/M
3300031798\|Ga0318523_10498315	Not Available	603	Open in IMG/M
3300031860\|Ga0318495_10073266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1527	Open in IMG/M
3300031893\|Ga0318536_10504385	Not Available	608	Open in IMG/M
3300031894\|Ga0318522_10323108	Not Available	585	Open in IMG/M
3300031897\|Ga0318520_10212686	Not Available	1144	Open in IMG/M
3300031910\|Ga0306923_11317819	Not Available	765	Open in IMG/M
3300031910\|Ga0306923_11528537	Not Available	697	Open in IMG/M
3300031912\|Ga0306921_10967988	Not Available	962	Open in IMG/M
3300031912\|Ga0306921_11274185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	815	Open in IMG/M
3300031912\|Ga0306921_11329619	Not Available	794	Open in IMG/M
3300031912\|Ga0306921_11729760	Not Available	675	Open in IMG/M
3300031942\|Ga0310916_11400093	Not Available	573	Open in IMG/M
3300031947\|Ga0310909_10549438	Not Available	967	Open in IMG/M
3300031954\|Ga0306926_11467020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	789	Open in IMG/M
3300031954\|Ga0306926_11933881	Not Available	665	Open in IMG/M
3300031954\|Ga0306926_11945652	Not Available	663	Open in IMG/M
3300032001\|Ga0306922_10151273	Not Available	2481	Open in IMG/M
3300032001\|Ga0306922_10841136	Not Available	957	Open in IMG/M
3300032001\|Ga0306922_12212793	Not Available	530	Open in IMG/M
3300032001\|Ga0306922_12295477	Not Available	518	Open in IMG/M
3300032008\|Ga0318562_10864084	Not Available	517	Open in IMG/M
3300032009\|Ga0318563_10362885	Not Available	784	Open in IMG/M
3300032009\|Ga0318563_10443436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	702	Open in IMG/M
3300032059\|Ga0318533_11320059	Not Available	527	Open in IMG/M
3300032067\|Ga0318524_10615212	Not Available	572	Open in IMG/M
3300032076\|Ga0306924_11076654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	878	Open in IMG/M
3300032261\|Ga0306920_100492561	Not Available	1819	Open in IMG/M
3300032782\|Ga0335082_10843551	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300032892\|Ga0335081_11751273	Not Available	674	Open in IMG/M
3300032893\|Ga0335069_10521973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1374	Open in IMG/M
3300032893\|Ga0335069_11705664	Not Available	672	Open in IMG/M
3300032893\|Ga0335069_11907753	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300032897\|Ga0335071_10223832	Not Available	1834	Open in IMG/M
3300032897\|Ga0335071_10505271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum doebereinerae	1161	Open in IMG/M
3300032954\|Ga0335083_10092650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3004	Open in IMG/M
3300032954\|Ga0335083_10728090	Not Available	803	Open in IMG/M
3300033004\|Ga0335084_11871731	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300033290\|Ga0318519_10500413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300033402\|Ga0326728_10720400	Not Available	744	Open in IMG/M
3300033405\|Ga0326727_10416139	Not Available	1222	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.37%
Host-Associated	Host-Associated	2.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.35%
Aquatic	Environmental → Aquatic	7.02%
Plants	Host-Associated → Plants	2.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.60%
Freshwater	Environmental → Aquatic → Freshwater	7.02%
Peat	Environmental → Terrestrial → Peat	1.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	25.44%
Loam	Environmental → Terrestrial → Soil → Loam	11.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.37%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	25.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	14.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.63%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.88%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_100204685	3300001546	Forest Soil	ENGAMTSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV*
JGI26340J50214_101393821	3300003368	Bog Forest Soil	MASCRTYESWWDLSLIDERNERPLHAALVAVIAVWATAFLFALV*
Ga0062386_1004449622	3300004152	Bog Forest Soil	VSKDISMTGSRTYESWWDPSLIDERNERPLLSAFVAAIAVWATAALLTLV*
Ga0070710_105305992	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRNIRTYDGWWDTSLTDRRNERALLSAFVAAIAVWAAVFLLAVI*
Ga0070764_100789773	3300005712	Soil	MTSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV*
Ga0066903_1082504732	3300005764	Tropical Forest Soil	MTSIHSYEGWWDLSLIDDRNERALLSAFVAVVAVWATIFLFAL
Ga0070712_1008572922	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTGNRTYESWWDLSLIDDRNQRPLLSAFVAVIAVWA
Ga0070765_1005945321	3300006176	Soil	VGVDIMVSIRTYEGWWDTSLINPRNERALLSASVAAIVVWATAFMLAAI*
Ga0070765_1019366052	3300006176	Soil	MKGGEGTMTNIRTYDGWWDTSLTDRRNERALFSAFVAAIAVWAAAFLLAVI*
Ga0105241_125631121	3300009174	Corn Rhizosphere	MASMHSYEGWWDLSLIDDRNERPLHAAFVAVITAWGTTFLFALF*
Ga0074046_100788733	3300010339	Bog Forest Soil	MTGNHTYESWWDPSLIDERSERPLLSAFVATVAVWMTAVLITLV*
Ga0074046_101627971	3300010339	Bog Forest Soil	MTGSRTYESWWDPSLIDERNERPLLSAFVAAIAVWATAALLTLV*
Ga0150983_131168751	3300011120	Forest Soil	RTYDGWWDTSLTDRRNERALFSAFVAAIAVWAAAFLLAVI*
Ga0164300_106924142	3300012951	Soil	VAYCGCLEKGTMASILTYECSWDESLLDPRNERALLSAFVAAIAIWAAVFLLTVI*
Ga0132258_137679711	3300015371	Arabidopsis Rhizosphere	MANIGAYEGWWDLSLIDERNERPLHAAFVAVIAVWTTAFLLALV*
Ga0182041_110710892	3300016294	Soil	MTNNRTFESWWDLSLIDERIERPLQTAFVAVIAVWA
Ga0182041_116948393	3300016294	Soil	ASPPISKEKGIMASIRTYEGWWDICLLDERNERALLSAFVAAIAVWATAFLLELV
Ga0182041_117240721	3300016294	Soil	QENAMINNRTYEGWWDLSLIDERNERPLHVALVAVIAIWAAALLFALV
Ga0182033_107937382	3300016319	Soil	MASSGTYEGWWDLSLIDERNERPLHVAFVAVIAIWATAFLFALV
Ga0182034_104333702	3300016371	Soil	MTNSRTYEGWWHVSLIDERNERPLHVALVHVALVAVIAIWATALLFALV
Ga0182037_108999712	3300016404	Soil	MASSGTYEGWWDLSLIDERNERPLRAAFVAVIAVWAMVVLFALA
Ga0182037_109257263	3300016404	Soil	MTNSRTYEGWWDLSLIDERNERPLHSAFVAVIAVWATAFLFALF
Ga0182037_109597002	3300016404	Soil	SIVEKSTMPNSDTYAGWWDLSLIDPRNERALLAAFVAAIAVWAVILLLDVI
Ga0182037_115630231	3300016404	Soil	MTNNRTFESWWDLSLIDERIERPLQTAFVAVIAVWAAAVLLALV
Ga0187817_102826512	3300017955	Freshwater Sediment	MAGIRTYEGWWDTSPFDERNERALLSAFIATIASWGTAFLLALG
Ga0187779_100365986	3300017959	Tropical Peatland	MASIRTYEGWWDLSLIDERNEQPLLSAFVAAIAVWATAVLLTLV
Ga0187779_105503672	3300017959	Tropical Peatland	MASIRAYESWWDASLIDERNEQPLHAAFVAAVAVWAAAFLLTLA
Ga0187779_109488031	3300017959	Tropical Peatland	ASIGTDEAWWDLSLIDERNERPLLSAFVATIAVSAAAVLLTLI
Ga0187776_112197692	3300017966	Tropical Peatland	MISSRTYEGWWDLSLIDEQNERLLHATLVAVIAVWATAFLFALV
Ga0187781_100822401	3300017972	Tropical Peatland	MTNSRTYEGWWDVSLIDERNERPLHAAFAAVIAVWATAFLFALI
Ga0187781_108828881	3300017972	Tropical Peatland	MTSRRTYEGWWDVSLIDERNERPLHAAFAAVIAVWAAAFLFALV
Ga0187781_110692981	3300017972	Tropical Peatland	MTNSRTYEGWWDLSLIDERNERPLHAAFAAVIAVWAMAFLFALV
Ga0187781_113010001	3300017972	Tropical Peatland	MTNNRTYEGWWDLSLIDKRIERSLYAAFVAVITVWATAFLLALV
Ga0187780_103661161	3300017973	Tropical Peatland	MASIRTNEGWWDTSLLDERNERALLSAFVATIAVWATAFLLELV
Ga0187766_103351931	3300018058	Tropical Peatland	MTGIRRYEDWWETTLIDERNERALLSAFIATIVSWGTAFLLALG
Ga0187765_108048052	3300018060	Tropical Peatland	MASIRTYEGWWDLSLIDERNEQPLLSAFVAAIAVWATAVLLTRISHSTALPLLC
Ga0187784_114045711	3300018062	Tropical Peatland	MTNSRTYEGWWDLSLIDERNERPLHAAFAAVIAVWA
Ga0187773_106366782	3300018064	Tropical Peatland	MASSRIYEGWWDLSLIDERNERPLLSAFVAVIAAWATAVLLTLV
Ga0187769_100993153	3300018086	Tropical Peatland	MTSRRTYEGWWDLSLIDERNERPLHAAFAAVIAVWAAAFLFALV
Ga0187769_102454993	3300018086	Tropical Peatland	MASIRPYRGWWDTSPFDERNERALLSAFVAVIAVWAAAFLLELV
Ga0187769_108503702	3300018086	Tropical Peatland	MASIRTYEGWWDLSLLDERNERALLSAFVAAIAVWATAVLLELV
Ga0187769_110430262	3300018086	Tropical Peatland	MASIRTYEGWWDLSLFDERNERALLSAFIATIASWGTALLLALV
Ga0210407_104814692	3300020579	Soil	MKSIHSYEGWWDLSLIDERNERALLSAFVAVVAVWATTFLFALF
Ga0210395_101140281	3300020582	Soil	MTSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV
Ga0210406_106413301	3300021168	Soil	MRNIRTYDGWWDTSLTDRRNERALLSAFVAAIAVWVAVFLLGVI
Ga0213877_101069182	3300021372	Bulk Soil	MASIRTYEGWWDLSLLDEKNERALLSAFVAAIAVWATAFLLEL
Ga0210397_101501891	3300021403	Soil	HKLENGAMTSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV
Ga0210386_100856215	3300021406	Soil	YNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV
Ga0210386_101530612	3300021406	Soil	MTSIRTYHGWWDTSLTDRRNERALLSAFVAAILVWAAAFLLAVI
Ga0210394_118220222	3300021420	Soil	MTSIHTYNGWWDLSLIDDRNEPQLLSAFVAIIAVWAMAFVFALV
Ga0213871_100930952	3300021441	Rhizosphere	MGSIRTYEGWSDLSLIDERNERPLYAAFVAVIAAWALFALI
Ga0126371_138590211	3300021560	Tropical Forest Soil	MASIRTYEDWWDLSQIDERNERPLRAAFVAVIGVWAAAVILALAFV
Ga0242674_10528251	3300022711	Soil	SIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV
Ga0242654_102096231	3300022726	Soil	SIHSYEGWWDLSLIDERNERALLSAFVAVVAVWATTFLFALF
Ga0209218_10678661	3300027505	Forest Soil	LENGAMTSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV
Ga0209218_11418501	3300027505	Forest Soil	MTNIRTYDGWWDTSLSDRKNERALFSAFVAAIAVWAAAF
Ga0209656_100635862	3300027812	Bog Forest Soil	MASCRTYESWWDLSLIDERNERPLHAALVAVIAVWATAFLFALV
Ga0209040_100177326	3300027824	Bog Forest Soil	MASIRTYEGWWDLSLIDERNERPLLSAFVAAIAVWATAVLLTLV
Ga0209040_101578551	3300027824	Bog Forest Soil	IPMTGNRTYESWWDPSLIDERNEQPLLSAFVAAIVVWATAALLTLF
Ga0209040_101716862	3300027824	Bog Forest Soil	MTNSRTYEGWWDLSRLDERNEQPLHAAIVAVVVVWATALLLALV
Ga0209039_101579892	3300027825	Bog Forest Soil	MTGSRTYESWWDPSLIDERNERPLLSAFVAAIAVWATAALLTLV
Ga0209275_102936603	3300027884	Soil	TSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV
Ga0209624_100499357	3300027895	Forest Soil	MTSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMA
Ga0209624_100524275	3300027895	Forest Soil	YSVSRRNGAMTSIHTYNGWWDLSLIDDRNEPRLLSAFVAIIAVWAMAFVFALV
Ga0265460_121252391	3300030740	Soil	GTMRNIRTYDGWWDTSLSDRRNERALLSAFVAAIAVWAAVFLLAVI
Ga0318541_105706591	3300031545	Soil	MASGTGTYEGWWDMSLIDERNERPLHAAFFAVIAVWATAVLLALALV
Ga0318541_106305371	3300031545	Soil	NKGEGIMGGIRAYKGWWDLSLIDDRNEGPLRAAFVAAVVVWATAVLLALVLV
Ga0318515_106853801	3300031572	Soil	MASGTRTYEGWWDLSLIDERNERPLHAAFVAVIAVWATAVLFALV
Ga0318542_107623852	3300031668	Soil	MASGTRTYEGWWDLSLIDERNERPLNVAFVAVVAVWATAVLLALALV
Ga0310686_10071167123	3300031708	Soil	MASFRTYDGWWDVSLLDPRNERALLSAFVAAIGVWAAAFLLAII
Ga0310686_11955263415	3300031708	Soil	MASILTYECSWDESLLDPRNERALLSAFVAAIAVWAAAFLLTVI
Ga0306917_105307542	3300031719	Soil	MASSGTYEGWWDLSLIDERNERPLRAAFVAVIAVWAMVVLFALV
Ga0318521_107872341	3300031770	Soil	VVDMRAYEGWWDLSLIDERNERALSLAFVAAIVVWATAFLLEFI
Ga0318503_103169101	3300031794	Soil	MASIHTYDGWWDLSLIDDRNDRALLSAFVAVIAVWATA
Ga0318523_104983152	3300031798	Soil	MLLPRAMASIHSYEGWWDLSLIDERDERPLNAAFFAVIAGWGTTFLFALF
Ga0318495_100732661	3300031860	Soil	YRRKAMASGNRTYEGWWDLSLIDERNERSLNAAFVAVVAVWATAVLLALALV
Ga0318536_105043852	3300031893	Soil	MEKGIMTRIRTYEGWWDVSLLDERNERALLSAFIAAIVVWAIALQLALI
Ga0318522_103231081	3300031894	Soil	MAGIRTYEGWWDLSLIDERNERPLRAAFVAVIAVWAMVVLFALV
Ga0318520_102126862	3300031897	Soil	MDSNRTYEGWWDLSLIDERNERPLHAAFVAVVAVWATAVLLALALV
Ga0306923_113178192	3300031910	Soil	MTNNRTFESWWDLSLIDERIERPLQTAFVAVIAVWAVVVLLALV
Ga0306923_115285371	3300031910	Soil	RSIMTSSRTYEGWWDLSLIDERNERPLHVALVAVIAIWATAFLFALV
Ga0306921_109679882	3300031912	Soil	MASIHTYDGWWDLSLIDDRNERALFSAFVAVIAVWATAVLFALI
Ga0306921_112741852	3300031912	Soil	MVCSRTYEGWWDLSLINERNERPLRAAFVAVIAAWGTAVLLALAL
Ga0306921_113296191	3300031912	Soil	MEENGAMASIHKYDGWWDLSLIDERNERALLAAFVAVIAVWATAVLFALV
Ga0306921_117297601	3300031912	Soil	MGGIRAYKGWWDLSLIDDRNERPLRAAFVAAVVVWATAVLLALVLV
Ga0310916_114000931	3300031942	Soil	MEDKHAITDSRTYEGWWDLSLIDERNERPLHVAFVAVIAIWATAFLFALV
Ga0310909_105494382	3300031947	Soil	MTNNRTFESWWDLSLIDERIERPLQTAFVAVIAVWAVAVLLALV
Ga0306926_114670203	3300031954	Soil	QRIANARCSSASAPVSEEKGIMASIRTYEGWWDICLLDERNERALLSAFVAAVVVWATAFLLELI
Ga0306926_119338812	3300031954	Soil	KRAYEGWWDLSLIDERNERALSLAFVAAIVVWATAFLLEFI
Ga0306926_119456521	3300031954	Soil	MINSRTYEGWWDLSLIDDRNDRPLLAAFVAVIAIWAMAVLLALV
Ga0306922_101512732	3300032001	Soil	YEGWWDLSLIDERNERPLRAAFVAVIAVWAMVVLFALV
Ga0306922_108411363	3300032001	Soil	MTRIRTYEGWWDVSLLDERNERALLSAFIAAIVVWAIALQLALI
Ga0306922_122127931	3300032001	Soil	ASNRTYEGWWDLSLIDERNERPLHAAFVAVVAVWATAVLLALALV
Ga0306922_122954772	3300032001	Soil	MASIHTYDGWWDLSLIDDRNERALFSAFVAVIAVWATAV
Ga0318562_108640841	3300032008	Soil	ILFRKGRHTMSSIHTYEGWWDLSLIDDRNERPLLSAFVAVIAVWAIAVLFALV
Ga0318563_103628852	3300032009	Soil	SYEGWWDLSLIDERDERPLNAAFFAVIAGWGTTFLFALF
Ga0318563_104434362	3300032009	Soil	GWWDLSLIDERNERPLHVAFVAVIAIWATAFLFALV
Ga0318533_113200591	3300032059	Soil	MAGIRTYEGWWDLSLIDERNERPLHVAFVAVIAIWATVFLFALV
Ga0318524_106152121	3300032067	Soil	MPNSDTYEGWWDLSLIDPRNERALLAAFVAAIAVWAV
Ga0306924_110766542	3300032076	Soil	MANSDAYEGWWDLSLIDPRNERALLAAFVAAIAVWAVILLLDVV
Ga0306920_1004925612	3300032261	Soil	MASIRTYERWWDICLLDERNERALLSAFVAAIAVWATAFLLELV
Ga0335082_108435511	3300032782	Soil	MASSRTYEGWWDLSLIDERNERPLLSAFVAVIAVWATAVLLTLV
Ga0335081_117512731	3300032892	Soil	MASIRTYRGWWDTSPFDERNERALLSAFVAVIAVWAAAFLLELV
Ga0335069_105219731	3300032893	Soil	MASSRTYESWWDLSLIDERNERPLLSAFVAAIAVWATAVLLTLV
Ga0335069_117056641	3300032893	Soil	MASSRTYEGWWDLSLIDERNRRPLFIAVIAVWATAVLLTLV
Ga0335069_119077532	3300032893	Soil	MASIRAYEGWWDLSLIDERNKRPLFIAVIAVWATAVLLTLV
Ga0335071_102238322	3300032897	Soil	MGSSRTYEGWWDLSLINERNERPLLSAFVAAIPVWATAVLLTLV
Ga0335071_105052712	3300032897	Soil	MASIRTGWWDLSLIDERNERPLLSAFVAAIAVWATAILLTLV
Ga0335083_100926504	3300032954	Soil	MASIRTYEGWWDLSLIDERNERPLLSAFVAVIAVWATAVLLTLV
Ga0335083_107280901	3300032954	Soil	AMASIRTYEGWWDLSLIDERNEQPLLSAFVAAIAVWATAVLLTLV
Ga0335084_118717311	3300033004	Soil	MASIRTYEGWWDLSLIDERNEQPLLSAFVAAIAVWATAVL
Ga0318519_105004131	3300033290	Soil	MASNRTYEGWWDLSLIDERNERPLHAAFVAVVAVWATAVLLALALV
Ga0326728_107204001	3300033402	Peat Soil	EKGIMASIHTNEGWWDASLLDERNERALLSAFVAAIADWATAFLLESV
Ga0326727_104161393	3300033405	Peat Soil	MASIHTNEGWWDASLLDERNERALLSAFVAAIADWATAFLLESV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081606

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences