Metagenome Family F081598

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081598
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	40 residues
Representative Sequence	MESFRELMEIIGTAVDGVGVFIVAAGAVVATARLLVRR
Number of Associated Samples	99
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.55 %
% of genes near scaffold ends (potentially truncated)	98.25 %
% of genes from short scaffolds (< 2000 bps)	91.23 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.246 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (21.930 % of family members)
Environment Ontology (ENVO)	Unclassified (37.719 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.649 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.55% β-sheet: 0.00% Coil/Unstructured: 45.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01648	ACPS	41.23
PF03740	PdxJ	15.79
PF05050	Methyltransf_21	11.40
PF13383	Methyltransf_22	4.39
PF07784	DUF1622	1.75
PF00654	Voltage_CLC	0.88
PF07992	Pyr_redox_2	0.88
PF13432	TPR_16	0.88
PF09335	SNARE_assoc	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0854	Pyridoxine 5'-phosphate synthase PdxJ	Coenzyme transport and metabolism [H]	15.79
COG4828	Uncharacterized membrane protein	Function unknown [S]	1.75
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.88
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.88
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.25 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.25 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.25 %
Unclassified	root	N/A	1.75 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	70.18 %
Unclassified	root	N/A	1.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	70.18 %
Unclassified	root	N/A	1.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	26.32 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	12.28 %
Unclassified	root	N/A	1.75 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	12.28 %
Unclassified	root	N/A	1.75 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	12.28 %
Unclassified	root	N/A	1.75 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	11.40 %
Unclassified	root	N/A	1.75 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	26.32 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	9.65 %
Unclassified	root	N/A	1.75 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459009\|GA8DASG02G1O55	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	505	Open in IMG/M
2170459012\|GOYVCMS02FQYQ8	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
2170459013\|GO6OHWN01AT7AO	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10083816	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
3300000891\|JGI10214J12806_10475340	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300000956\|JGI10216J12902_102175401	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	826	Open in IMG/M
3300000956\|JGI10216J12902_105667339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	867	Open in IMG/M
3300005171\|Ga0066677_10014572	All Organisms → cellular organisms → Bacteria	3500	Open in IMG/M
3300005178\|Ga0066688_10251918	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300005180\|Ga0066685_10180052	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300005187\|Ga0066675_10582811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	840	Open in IMG/M
3300005290\|Ga0065712_10671547	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005336\|Ga0070680_100688453	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300005445\|Ga0070708_101405343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	651	Open in IMG/M
3300005451\|Ga0066681_10756533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	589	Open in IMG/M
3300005467\|Ga0070706_101978648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	528	Open in IMG/M
3300005540\|Ga0066697_10145183	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300005540\|Ga0066697_10645578	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005545\|Ga0070695_100581407	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005555\|Ga0066692_10489088	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300005557\|Ga0066704_10430050	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300005559\|Ga0066700_10680112	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005574\|Ga0066694_10440039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	610	Open in IMG/M
3300005576\|Ga0066708_10492280	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300005587\|Ga0066654_10818908	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005598\|Ga0066706_10739169	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300005764\|Ga0066903_100278119	All Organisms → cellular organisms → Bacteria	2621	Open in IMG/M
3300006046\|Ga0066652_101332644	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	675	Open in IMG/M
3300006175\|Ga0070712_101265211	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300006800\|Ga0066660_10873001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	733	Open in IMG/M
3300007258\|Ga0099793_10473314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	621	Open in IMG/M
3300009012\|Ga0066710_102266691	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	791	Open in IMG/M
3300009012\|Ga0066710_102336969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	777	Open in IMG/M
3300009137\|Ga0066709_103212598	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	596	Open in IMG/M
3300009147\|Ga0114129_11238377	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	928	Open in IMG/M
3300009162\|Ga0075423_11729254	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	674	Open in IMG/M
3300010038\|Ga0126315_10010518	All Organisms → cellular organisms → Bacteria	4366	Open in IMG/M
3300010043\|Ga0126380_11861891	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300010323\|Ga0134086_10058289	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1319	Open in IMG/M
3300010358\|Ga0126370_12335839	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300010360\|Ga0126372_10888367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	892	Open in IMG/M
3300010360\|Ga0126372_12854738	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300010364\|Ga0134066_10024451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1373	Open in IMG/M
3300010366\|Ga0126379_10419812	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1391	Open in IMG/M
3300011003\|Ga0138514_100019620	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300012208\|Ga0137376_11051490	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	697	Open in IMG/M
3300012208\|Ga0137376_11407693	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300012209\|Ga0137379_11093748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	703	Open in IMG/M
3300012210\|Ga0137378_10067575	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3240	Open in IMG/M
3300012351\|Ga0137386_11023492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	587	Open in IMG/M
3300012354\|Ga0137366_10641919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300012354\|Ga0137366_11033876	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	569	Open in IMG/M
3300012356\|Ga0137371_11440137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300012359\|Ga0137385_11392144	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300012361\|Ga0137360_10004218	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	8707	Open in IMG/M
3300012361\|Ga0137360_11622177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	552	Open in IMG/M
3300012362\|Ga0137361_10273180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1544	Open in IMG/M
3300012685\|Ga0137397_10087712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2268	Open in IMG/M
3300012922\|Ga0137394_10962460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	710	Open in IMG/M
3300012929\|Ga0137404_11155082	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	711	Open in IMG/M
3300012955\|Ga0164298_11237227	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300012957\|Ga0164303_10604752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	722	Open in IMG/M
3300012960\|Ga0164301_11136729	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300012977\|Ga0134087_10618349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300012984\|Ga0164309_10401261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1023	Open in IMG/M
3300014157\|Ga0134078_10050209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1441	Open in IMG/M
3300015245\|Ga0137409_10999407	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	674	Open in IMG/M
3300015357\|Ga0134072_10095235	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	907	Open in IMG/M
3300015358\|Ga0134089_10088178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1177	Open in IMG/M
3300015371\|Ga0132258_11597099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1646	Open in IMG/M
3300015372\|Ga0132256_100105049	All Organisms → cellular organisms → Bacteria	2758	Open in IMG/M
3300015372\|Ga0132256_102034434	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	680	Open in IMG/M
3300016387\|Ga0182040_10553709	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	926	Open in IMG/M
3300016404\|Ga0182037_10858167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	785	Open in IMG/M
3300017654\|Ga0134069_1195209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	689	Open in IMG/M
3300018027\|Ga0184605_10251145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	804	Open in IMG/M
3300018028\|Ga0184608_10487013	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300018051\|Ga0184620_10019553	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300018054\|Ga0184621_10298648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	568	Open in IMG/M
3300018071\|Ga0184618_10400592	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300018076\|Ga0184609_10255793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	819	Open in IMG/M
3300018076\|Ga0184609_10313600	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	733	Open in IMG/M
3300018433\|Ga0066667_10191832	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1492	Open in IMG/M
3300018433\|Ga0066667_10477358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1023	Open in IMG/M
3300018433\|Ga0066667_11028450	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	711	Open in IMG/M
3300018433\|Ga0066667_11982724	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	534	Open in IMG/M
3300018482\|Ga0066669_10279305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1341	Open in IMG/M
3300019789\|Ga0137408_1255794	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	726	Open in IMG/M
3300019881\|Ga0193707_1103250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	849	Open in IMG/M
3300020002\|Ga0193730_1056996	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300020022\|Ga0193733_1044132	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300021080\|Ga0210382_10076473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1364	Open in IMG/M
3300021478\|Ga0210402_10980514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	772	Open in IMG/M
3300022694\|Ga0222623_10184200	Not Available	811	Open in IMG/M
3300022694\|Ga0222623_10197703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	780	Open in IMG/M
3300025315\|Ga0207697_10036019	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300025931\|Ga0207644_11564638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	553	Open in IMG/M
3300026308\|Ga0209265_1017750	All Organisms → cellular organisms → Bacteria	2207	Open in IMG/M
3300026309\|Ga0209055_1068842	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1481	Open in IMG/M
3300026323\|Ga0209472_1312635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300026324\|Ga0209470_1280921	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300026329\|Ga0209375_1301717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	523	Open in IMG/M
3300026523\|Ga0209808_1076547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1451	Open in IMG/M
3300026536\|Ga0209058_1168679	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	988	Open in IMG/M
3300026551\|Ga0209648_10141933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1909	Open in IMG/M
3300028379\|Ga0268266_10351566	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300028708\|Ga0307295_10015158	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1851	Open in IMG/M
3300028768\|Ga0307280_10230682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	661	Open in IMG/M
3300028793\|Ga0307299_10135064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	926	Open in IMG/M
3300028799\|Ga0307284_10262064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	689	Open in IMG/M
3300028884\|Ga0307308_10549700	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300032261\|Ga0306920_101652758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	909	Open in IMG/M
3300032261\|Ga0306920_102491045	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.11%
Host-Associated	Host-Associated	7.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Aquatic	Environmental → Aquatic	8.77%
Plants	Host-Associated → Plants	7.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.46%
Sediment	Environmental → Aquatic → Sediment	7.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.63%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.89%
Loam	Environmental → Terrestrial → Soil → Loam	6.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.53%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.51%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F47_09674840	2170459009	Grass Soil	MEYFRQIMEVVGTSVDGVGVFIVAAGMLVATVRLVSR
N56_09044260	2170459012	Grass Soil	MEIVGTAVDGVGVFIVAAGALVATARLLIRLAHKTGNYYSSY
N57_08241530	2170459013	Grass Soil	MFMENFRWLMEIVGTAVDGVGVFIVAAGALVATARLLVRRAH
AF_2010_repII_A001DRAFT_100838162	3300000793	Forest Soil	MEIIGTAVDGVGVFIVAAGALVATARLLVHRAHNTGNYYASYRQ
JGI10214J12806_104753403	3300000891	Soil	MEYFRHIMEVVGTSVDGVGVFIVAAGMVAATIRLVLR
JGI10216J12902_1021754012	3300000956	Soil	MNAAMEYFRHMMEVVGTSVDGVGVFIVAAGMVAATI
JGI10216J12902_1056673391	3300000956	Soil	MNAAMEYYRHIMDVVGTAVDGVGVFIVVGGALVATGR
Ga0066677_100145726	3300005171	Soil	MERFRQVMEIVGTAVDGVGVFIVAAGALVATAHLVVRRAHNAGNYYS
Ga0066688_102519181	3300005178	Soil	MESFRWIMDIVGTSVDGVGVFIVVGGALFATVRLAFRHMQ
Ga0066685_101800523	3300005180	Soil	MKMTMEYYRQIMDVVGTSVDGIGVFIVVGGALVATLRLAL
Ga0066675_105828111	3300005187	Soil	MENFRYLMEIIGTAVDGVGVCIVAAGAIVATARLLVRRAHNIGNY
Ga0065712_106715471	3300005290	Miscanthus Rhizosphere	MNAGMEYFRHIMEVVGTSVDGVGVFIVAAGMVVATVRLAS
Ga0070680_1006884532	3300005336	Corn Rhizosphere	MEIVGTAVDGVGVFIVAVGALVATARLLIRLAHKTGSYYSSYR
Ga0070708_1014053432	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MESFRRIMDIIGTSVDGVGVCIVAGGAIVATARLIVRRMQRTG
Ga0066681_107565331	3300005451	Soil	MNAGMEYFRHIMEVVGTSVDGVGVFIVAGGAIVATMRLVVF
Ga0070706_1019786481	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MEYFRHIMEIVGTSVDGVGVFIVAGGMLVATARLVSRLRDRAH
Ga0066697_101451833	3300005540	Soil	MSLRVTPTDMTMEYYRQIMDVVGTSVDGIGVFIVVGGALV
Ga0066697_106455783	3300005540	Soil	MEIVGTAVDGVGVFIVAAGAVVATARLLVRRAHNTGNYYSSY
Ga0070695_1005814071	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSMEYYRYIMDVVGTSVDAIGVFIVVGGALVATARLAIHRAQST
Ga0066692_104890883	3300005555	Soil	MEVIGTAVDGVGVFIVAAGAIVATARLLVRRAHNTGNYYSS
Ga0066704_104300501	3300005557	Soil	MTMEHYRQIMDIVGTSVDGVGVFIVVGGALVATARL
Ga0066700_106801122	3300005559	Soil	MENFRQIMDIVGTSVDGVGVLIVVGGALFATVRLAVRR
Ga0066694_104400392	3300005574	Soil	MEYYRHIMDVVGTSVDGIGVFIVVGGALVATARLVLH
Ga0066708_104922801	3300005576	Soil	MENFRELMEIIGTAVDGVGVFIVAAGAVVATARLLI
Ga0066654_108189081	3300005587	Soil	MEHYRQIMDIVGTGVDGVGVFIVVGGALVATARLL
Ga0066706_107391691	3300005598	Soil	MERFRQVLEIVGTAVDGVGVFIVAAGALVATAHLVVRRAHN
Ga0066903_1002781191	3300005764	Tropical Forest Soil	MEYFRHIMEVVGTSVDGVGVFIVAGGMVVATARLAVRRAHDTGNYY
Ga0066652_1013326442	3300006046	Soil	MNAAMEYFRNIMEVVGTSVDGVGVFIVAAGMVAATIRLVLRL
Ga0070712_1012652111	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEIVGTAVDAVGVFIVAAGAVVATARLLIHRAHNIGNYYSSYRQDIGRAILL
Ga0066660_108730013	3300006800	Soil	MTMEHYRHIMDIVGTGVDGVGVFIVVGGALVATARL
Ga0099793_104733142	3300007258	Vadose Zone Soil	MESFRRIMDIVGTTMDGIGVFVVAGGALIATARLA
Ga0066710_1022666913	3300009012	Grasslands Soil	MTMEYYRHIMDIVGTGVDGVGVFIVVGGALVATARLVFHR
Ga0066710_1023369693	3300009012	Grasslands Soil	MEYYRHIMDIVGTAVDGVGVFIVVGGALVATARLVLHRA
Ga0066709_1032125982	3300009137	Grasslands Soil	MNGGMEYFRHIMEVVGTSVDGVGVFIVAVGMVVATVRLATHRSH
Ga0114129_112383771	3300009147	Populus Rhizosphere	MEHFRHIMEVVGTSVDGVGVFIVAGGMVVATARLAVRRAHETGNY
Ga0075423_117292541	3300009162	Populus Rhizosphere	MEKFREVMEITGTAVDGVGVFIVAAGALVATARLLVRRAHNAGN
Ga0126315_100105188	3300010038	Serpentine Soil	MESFRQIMDIVGTSVDGVGVLIVVGGAIVATVRLVRRL
Ga0126380_118618911	3300010043	Tropical Forest Soil	MFMENFRQLMEIIGTAVDGVGVFIVAAGALVATARLLVHRTHNTG
Ga0134086_100582893	3300010323	Grasslands Soil	MENFRQIMDIVGTSVDGVGVFIVVGGALFATVRLALRRATRRQLLF
Ga0126370_123358391	3300010358	Tropical Forest Soil	MEEFRQVMEIVGTAVDGVGVLIVAAGALVATARLLMR
Ga0126372_108883673	3300010360	Tropical Forest Soil	MENFRQLMEIIGTAVDAVGVFIVAAGALVATARLLVHRAHNTGDYY
Ga0126372_128547381	3300010360	Tropical Forest Soil	MPGFPATKMFMENFRQLMEIIGTAVDGVGVFIVAAGALVATARLLVHRTHN
Ga0134066_100244511	3300010364	Grasslands Soil	MERFRQVMEIVGTAVDGVGVFIVAAGALVATAHLVVRR
Ga0126379_104198121	3300010366	Tropical Forest Soil	MEQFRRIMDIVGTSVDGVGVFIVVGGALVATARLAVRRVHNA
Ga0138514_1000196201	3300011003	Soil	MTAGMESFRHIMAIIVTSVDGVGVFIVAGGMVVATCNNEY
Ga0137376_110514901	3300012208	Vadose Zone Soil	MNGAMEYFRHIMEVVGTSVDGVGVFIVAVGMVVAT
Ga0137376_114076932	3300012208	Vadose Zone Soil	MTMEYFRYIMEIVGTGVDGVGVLIVVSGAIVATARLVLHRMHSTG
Ga0137379_110937482	3300012209	Vadose Zone Soil	MESFRQIMDIVGTSVDGVGVLIVVRGALFATVRLAVRRVQK
Ga0137378_100675755	3300012210	Vadose Zone Soil	MENFRQIMDIVGTSVDGVGVLIVVGGALFATVRLAVRRV
Ga0137386_110234921	3300012351	Vadose Zone Soil	MEYYRHIMDVVGTSVDGIGVFIVVGGALVATARLVLHRAQST
Ga0137366_106419192	3300012354	Vadose Zone Soil	MENFRELMEIIGTGIDGVGVFIVAAGAVVATARLLVHRAHNTGNY
Ga0137366_110338761	3300012354	Vadose Zone Soil	MESFRQIMDIVGTSVDGVGVLIVVGGALFATVRLAV
Ga0137371_114401372	3300012356	Vadose Zone Soil	MESFRRIMDIVGTSVDGVGVCIVVGGAFFATVRLAVRRMH
Ga0137385_113921442	3300012359	Vadose Zone Soil	MERFRQVMEIVGTAVDGVGEFIVAAGALVATAHLVVRRAHNAGNYYSS
Ga0137360_100042181	3300012361	Vadose Zone Soil	MTMEYFRHIMEIVGTSMDGVGVFVVAGGALVATLRLLVW
Ga0137360_116221772	3300012361	Vadose Zone Soil	MNAAMEYFRHIMEVVGTSVDGVGVFIVAGGMMVATLRLATR
Ga0137361_102731803	3300012362	Vadose Zone Soil	MENFRQLMEVIGTAIDGVGVFIVAAGALVATARLLVRRAHNVGNYYSSYRQDIGRA
Ga0137397_100877121	3300012685	Vadose Zone Soil	MENFRELMEIIGTAIDGVGVFIVAAGAVVATARLMVRR
Ga0137394_109624603	3300012922	Vadose Zone Soil	MTLEYFRYIMEIVGTGVDGVGVLIVVSGAIVATARL
Ga0137404_111550821	3300012929	Vadose Zone Soil	MESFRELMEIIGTAVDGVGVFIVAAGAVVATARLLVRR
Ga0164298_112372271	3300012955	Soil	MFMENFRWLMEIVGTAVDGVGVFIVAAGALVATARLLV
Ga0164303_106047521	3300012957	Soil	MFMENFRWLMEIVGTAVDGVGVFIVAAGALVATARL
Ga0164301_111367291	3300012960	Soil	MFMENFRWLMEIVGTAVDGVGVFIVAAGALVATAR
Ga0134087_106183492	3300012977	Grasslands Soil	MEHYRHIMDIVGTGVDGVGVFIVVGGALVATARLLLHRAQS
Ga0164309_104012611	3300012984	Soil	MFMENFRWLMEIVGTAVDGVGVFIVAAGALVATARLL
Ga0134078_100502091	3300014157	Grasslands Soil	MDRFREVMEIVGTAVDGVGVFIVAAGAVVATARLVV
Ga0137409_109994072	3300015245	Vadose Zone Soil	MNAAMEYFRHIMEVVGTSVDGVGVFIVAGGMIVATLR
Ga0134072_100952353	3300015357	Grasslands Soil	MEYYRHIMDIVGTAVDGVGVLIVVGGALVATARLVLHRAQST
Ga0134089_100881781	3300015358	Grasslands Soil	MESFRRIMDIIGTGVDGIGVCIVVGGALVATARLMVRRMHSTGN
Ga0132258_115970991	3300015371	Arabidopsis Rhizosphere	MEIVGTAVDAVGVFIVAAGALVATARLMVHRAHHTGNYYTSYRQDIGRAI
Ga0132256_1001050493	3300015372	Arabidopsis Rhizosphere	MFMENFRLLMEIVGTAVDGVGVFIVAAGALVATARLLVRRA
Ga0132256_1020344342	3300015372	Arabidopsis Rhizosphere	MFMENFRQLMEIVGTAVDGVGVFIVAAGALVATARLLVRLAHKTG
Ga0182040_105537093	3300016387	Soil	MENFRQLMEIIGTAVDGVGVFIVAAGALVATARLL
Ga0182037_108581671	3300016404	Soil	MEIIGTAVDGVGVFIVAAGALVATARLLVRRTHKT
Ga0134069_11952092	3300017654	Grasslands Soil	MEVIGTAIDGVGVFIVAAGAIVATARLVVRRAHNTGNY
Ga0184605_102511452	3300018027	Groundwater Sediment	MEIIGTAVDGVGVFIVAAGALIATARLLVRLRHNIGNY
Ga0184608_104870132	3300018028	Groundwater Sediment	MEQFRHIMEIVGTGMDGVGVFIVAGGALVATWRLLLRRAQR
Ga0184620_100195531	3300018051	Groundwater Sediment	MNAAMEYFRHIMEVVGTSVDGVGVFIVAAGMVAATIRLVLRLRDRAH
Ga0184621_102986482	3300018054	Groundwater Sediment	MDGVGVFIVAGGALVATARLFVRRAHNTGNYYSSYRQD
Ga0184618_104005921	3300018071	Groundwater Sediment	MTMEHFRYIMEIVGTGMDGVGVLIVVSGAIVATARLVLHRMHSTGN
Ga0184609_102557931	3300018076	Groundwater Sediment	MEIVGTSMDGVGVFIVAGGALVATARLFVRRAHNTGNYYSS
Ga0184609_103136001	3300018076	Groundwater Sediment	MTMEYFRYIMEIVGTGMDGVGVFIVAGGALTATWRLLLWRAH
Ga0066667_101918321	3300018433	Grasslands Soil	MESFRRIMDIIGTSVDGVGVCIVVGSALFATVTLA
Ga0066667_104773582	3300018433	Grasslands Soil	MEIIGTAVDGVGVFIVAAGAIVATARLLVHRAHNSGNYYSLYR
Ga0066667_110284502	3300018433	Grasslands Soil	MDIVGTGVDGVGVFIVVGGALFATARLGLRRMHGAGN
Ga0066667_110507503	3300018433	Grasslands Soil	MDIIGTAVDGVGGFIVVGGALVATAGLLLHRAQSTGNYYSPYRQ
Ga0066667_119827241	3300018433	Grasslands Soil	MNAAMEYFRHVMEIVGTGVDGIGVFIIAGGMVVATARLAVRRS
Ga0066669_102793052	3300018482	Grasslands Soil	MESFRRIMDIIGTSVDGVGVCIVAVGAIVATQRLLIHAT
Ga0137408_12557942	3300019789	Vadose Zone Soil	MESFRQIMEIVGTTMDGVGVLVVAGGALVATARLLARRV
Ga0193707_11032502	3300019881	Soil	MNAVMEYFRHIMEVVGTSVDGVGVFIVAAGMVAATIR
Ga0193730_10569961	3300020002	Soil	TPTDMTMEYFRYIMEIVGTGVDGVGVLIVVSGAIVATARLVL
Ga0193733_10441321	3300020022	Soil	MNAVMEYFRHIMEVVGTSVDGVGVFIVAAGMVAATIRLV
Ga0210382_100764732	3300021080	Groundwater Sediment	MESFRRIMDLVGTTIDGVGVFIVAGGALVATARLAVRRVRNT
Ga0210402_109805141	3300021478	Soil	MNAGMEYFRHIMEVVGTSVDGVGVFIVAAGMLAATIRLALR
Ga0222623_101842002	3300022694	Groundwater Sediment	MEIIGTAVDCVGVFIVAAGALVATARLLVRRAHNIGNYYSSY
Ga0222623_101977031	3300022694	Groundwater Sediment	MEYYRHIMDIVGTGVDGVGVFIVVGGALVATARLVLHRAQSTGNYY
Ga0207697_100360191	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MEIIGTAVDGVGVFIVAAGALVATARLLVRRTHKTGNYYSSY
Ga0207644_115646382	3300025931	Switchgrass Rhizosphere	MNGDMEYFRHIMEIVGTSVDGVGVFIVAAGMVVATV
Ga0209265_10177501	3300026308	Soil	MDIVGTGVDGVGVFIVVGGALVATARLLLHRAQST
Ga0209055_10688423	3300026309	Soil	MEYYRHIMDIVGTAVDGVGVFIVVGGALVATARLVLH
Ga0209472_13126352	3300026323	Soil	MNGAMEYFRHIMEVVGTTVDGVGVFIVAGGMVVATVRL
Ga0209470_12809211	3300026324	Soil	MENFRELMEIIGTGIDGVGVFIVAAGAVVATARLLV
Ga0209375_13017171	3300026329	Soil	MNAGMEYFRHIMEVVGTSVDGVGVFIVAGGAIVATMRLVV
Ga0209808_10765473	3300026523	Soil	MERFRQVMEIVGTAVDGVGVFIVAAGALVATAHLVVRRAHNA
Ga0209058_11686791	3300026536	Soil	MEYYRQIMDVVGTSVDGIGVFIVVGGALVATARLL
Ga0209648_101419331	3300026551	Grasslands Soil	MEIVGTAVDAVGVFIVAAGALVATARLLIHRAHNTGNYYSSF
Ga0268266_103515661	3300028379	Switchgrass Rhizosphere	MNAGMEYFRHIMEVVGTSVDGVGVFIVAAGMVVATVRLA
Ga0307295_100151581	3300028708	Soil	MEIVGTAVDGVGVFIVAAGAIVATARLLVRRSHNTGNYYSS
Ga0307280_102306821	3300028768	Soil	MEIVGTAVDGVGVFIVAAGAIVATARLLVRRSHNT
Ga0307299_101350642	3300028793	Soil	MNAPMEYFRHIMEVVGTSVDGVGVFIVAAGMVAATIRLV
Ga0307284_102620642	3300028799	Soil	MEIVGTAVDGVGVFIVAAGALVATARLLVRRAHNVGNYYSSFR
Ga0307308_105497003	3300028884	Soil	MTMEYFRYIMEIVGTGVDGVGVLIVVSGAIVATARLVL
Ga0306920_1016527583	3300032261	Soil	MEIIGTAVDGVGVFIVAAGALVATVRLVVDRAHNTG
Ga0306920_1024910451	3300032261	Soil	MEIIGTAVDGVGVFIVAAGALVATARLLVHRAHNTGNYYSSY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081598

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences