Metagenome / Metatranscriptome Family F081561

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081561
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	64 residues
Representative Sequence	CGVFPLLLLSLAMVESNHETVLGLNGLLFGALIILAGFLIYFVTGKLKIRHTKPVVLEEIEELETA
Number of Associated Samples	81
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.26 %
% of genes near scaffold ends (potentially truncated)	86.84 %
% of genes from short scaffolds (< 2000 bps)	77.19 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.351 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (43.860 % of family members)
Environment Ontology (ENVO)	Unclassified (41.228 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.246 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.19% β-sheet: 0.00% Coil/Unstructured: 46.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF15902	Sortilin-Vps10	22.81
PF02012	BNR	10.53
PF02517	Rce1-like	3.51
PF01520	Amidase_3	2.63
PF04952	AstE_AspA	2.63
PF04389	Peptidase_M28	1.75
PF13520	AA_permease_2	1.75
PF09678	Caa3_CtaG	0.88
PF11799	IMS_C	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	3.51
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	3.51
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	2.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.35 %
Unclassified	root	N/A	9.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.35 %
Unclassified	root	N/A	9.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.35 %
Unclassified	root	N/A	9.65 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	71.05 %
Unclassified	root	N/A	9.65 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	63.16 %
Unclassified	root	N/A	9.65 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.26 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.16 %
Unclassified	root	N/A	9.65 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.26 %
Candidatus Lindowbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Lindowbacteria	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.16 %
Unclassified	root	N/A	9.65 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.26 %
Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Lindowbacteria → Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.16 %
Unclassified	root	N/A	9.65 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.51 %
Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Lindowbacteria → Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	63.16 %
Unclassified	root	N/A	9.65 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Lindowbacteria → Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12072141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300000955\|JGI1027J12803_101425012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300002914\|JGI25617J43924_10009048	All Organisms → cellular organisms → Bacteria	3197	Open in IMG/M
3300005166\|Ga0066674_10080169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1502	Open in IMG/M
3300005167\|Ga0066672_10574496	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300005172\|Ga0066683_10000437	All Organisms → cellular organisms → Bacteria	13087	Open in IMG/M
3300005174\|Ga0066680_10894307	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300005332\|Ga0066388_103511972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300005454\|Ga0066687_10053279	All Organisms → cellular organisms → Bacteria	1895	Open in IMG/M
3300005454\|Ga0066687_10104376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1436	Open in IMG/M
3300005468\|Ga0070707_100663826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1005	Open in IMG/M
3300005556\|Ga0066707_10734507	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	615	Open in IMG/M
3300005557\|Ga0066704_10162396	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1501	Open in IMG/M
3300005561\|Ga0066699_10010494	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4580	Open in IMG/M
3300005561\|Ga0066699_10506729	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	863	Open in IMG/M
3300006102\|Ga0075015_100763087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300006176\|Ga0070765_101676806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300006796\|Ga0066665_10111883	Not Available	2020	Open in IMG/M
3300007255\|Ga0099791_10329207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300007258\|Ga0099793_10684621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300007265\|Ga0099794_10005974	All Organisms → cellular organisms → Bacteria → Proteobacteria	4912	Open in IMG/M
3300007265\|Ga0099794_10015478	All Organisms → cellular organisms → Bacteria	3368	Open in IMG/M
3300009038\|Ga0099829_10804394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300009088\|Ga0099830_10055456	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300009088\|Ga0099830_10101437	All Organisms → cellular organisms → Bacteria	2149	Open in IMG/M
3300009088\|Ga0099830_10123529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1962	Open in IMG/M
3300009088\|Ga0099830_10798829	Not Available	778	Open in IMG/M
3300009089\|Ga0099828_10052747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3381	Open in IMG/M
3300009089\|Ga0099828_10110551	All Organisms → cellular organisms → Bacteria	2389	Open in IMG/M
3300009089\|Ga0099828_11196786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300009143\|Ga0099792_10005392	All Organisms → cellular organisms → Bacteria	5116	Open in IMG/M
3300009143\|Ga0099792_10907733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300010046\|Ga0126384_10077496	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300010304\|Ga0134088_10053632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1855	Open in IMG/M
3300010326\|Ga0134065_10235136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300010359\|Ga0126376_10027147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3822	Open in IMG/M
3300010359\|Ga0126376_11476155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300010359\|Ga0126376_13279727	Not Available	500	Open in IMG/M
3300010361\|Ga0126378_10183623	All Organisms → cellular organisms → Bacteria	2159	Open in IMG/M
3300010361\|Ga0126378_10206390	Not Available	2043	Open in IMG/M
3300010361\|Ga0126378_10413104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1462	Open in IMG/M
3300010361\|Ga0126378_10431603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1431	Open in IMG/M
3300010376\|Ga0126381_101286862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1057	Open in IMG/M
3300010376\|Ga0126381_103664770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300010376\|Ga0126381_104015430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300010398\|Ga0126383_10069186	Not Available	3027	Open in IMG/M
3300010398\|Ga0126383_12930041	Not Available	557	Open in IMG/M
3300010880\|Ga0126350_10293980	Not Available	870	Open in IMG/M
3300011269\|Ga0137392_10162132	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1811	Open in IMG/M
3300011269\|Ga0137392_10271305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1399	Open in IMG/M
3300011269\|Ga0137392_11331317	Not Available	577	Open in IMG/M
3300011270\|Ga0137391_10016911	All Organisms → cellular organisms → Bacteria	5963	Open in IMG/M
3300011270\|Ga0137391_10157919	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
3300011270\|Ga0137391_10614641	All Organisms → cellular organisms → Bacteria → Acidobacteria	910	Open in IMG/M
3300011271\|Ga0137393_10079959	All Organisms → cellular organisms → Bacteria → Acidobacteria	2627	Open in IMG/M
3300011271\|Ga0137393_10337941	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Lindowbacteria → Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27	1285	Open in IMG/M
3300012202\|Ga0137363_10034498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3523	Open in IMG/M
3300012202\|Ga0137363_10312227	Not Available	1293	Open in IMG/M
3300012202\|Ga0137363_10355348	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300012202\|Ga0137363_11145997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300012203\|Ga0137399_10621826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	908	Open in IMG/M
3300012203\|Ga0137399_10993796	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300012207\|Ga0137381_11684885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300012209\|Ga0137379_11544721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300012211\|Ga0137377_10637469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1002	Open in IMG/M
3300012351\|Ga0137386_10363042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1042	Open in IMG/M
3300012351\|Ga0137386_10369175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1033	Open in IMG/M
3300012354\|Ga0137366_10978884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300012362\|Ga0137361_10953842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300012582\|Ga0137358_10826253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300012685\|Ga0137397_11291720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300012917\|Ga0137395_10363680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1032	Open in IMG/M
3300012918\|Ga0137396_10144123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1731	Open in IMG/M
3300012918\|Ga0137396_11312389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300012923\|Ga0137359_11449925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300012925\|Ga0137419_11873671	Not Available	514	Open in IMG/M
3300012927\|Ga0137416_10365948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1213	Open in IMG/M
3300012929\|Ga0137404_10718847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	904	Open in IMG/M
3300012929\|Ga0137404_11451764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300012930\|Ga0137407_11961718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300012971\|Ga0126369_12943295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300014157\|Ga0134078_10034594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1679	Open in IMG/M
3300015358\|Ga0134089_10130824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300017966\|Ga0187776_11469391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300018431\|Ga0066655_11002797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300019789\|Ga0137408_1117506	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300019789\|Ga0137408_1179451	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1259	Open in IMG/M
3300020579\|Ga0210407_10311624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229	Open in IMG/M
3300021401\|Ga0210393_10001396	All Organisms → cellular organisms → Bacteria	20245	Open in IMG/M
3300021420\|Ga0210394_10240445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1584	Open in IMG/M
3300021479\|Ga0210410_11437372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300024323\|Ga0247666_1116954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300026297\|Ga0209237_1168545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300026297\|Ga0209237_1181446	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300026331\|Ga0209267_1292822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300026332\|Ga0209803_1000083	All Organisms → cellular organisms → Bacteria	52519	Open in IMG/M
3300026497\|Ga0257164_1046107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300026532\|Ga0209160_1104904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1423	Open in IMG/M
3300026538\|Ga0209056_10626506	Not Available	542	Open in IMG/M
3300026551\|Ga0209648_10007953	All Organisms → cellular organisms → Bacteria	9130	Open in IMG/M
3300026551\|Ga0209648_10432922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300027297\|Ga0208241_1055958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300027671\|Ga0209588_1029118	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1760	Open in IMG/M
3300027725\|Ga0209178_1002998	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5289	Open in IMG/M
3300027862\|Ga0209701_10205298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1173	Open in IMG/M
3300028906\|Ga0308309_11215570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300029636\|Ga0222749_10694583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300031753\|Ga0307477_10244246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1244	Open in IMG/M
3300031753\|Ga0307477_10370032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	984	Open in IMG/M
3300031754\|Ga0307475_11389432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300031820\|Ga0307473_10284481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1032	Open in IMG/M
3300031942\|Ga0310916_10017989	All Organisms → cellular organisms → Bacteria → Acidobacteria	4926	Open in IMG/M
3300032064\|Ga0318510_10219459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300032205\|Ga0307472_100055504	All Organisms → cellular organisms → Bacteria	2498	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.12%
Aquatic	Environmental → Aquatic	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.12%
Sediment	Environmental → Aquatic → Sediment	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.86%
Loam	Environmental → Terrestrial → Soil → Loam	4.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.88%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	43.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_120721411	3300000789	Soil	LLSLAIVESGQETVLGMNGLMFGALIIVSGFLVYFVTGKLNIRKTKPVVAREIEELEAI*
JGI1027J12803_1014250121	3300000955	Soil	GIFPLLLLSLAIVESGQETVLGMNGLMFGALIIVSGFLVYFVTGKLNIRKTKPVVAREIEELEAI*
JGI25617J43924_100090483	3300002914	Grasslands Soil	MVESNHETVLGVNGLLFGVLVILAGFLIYFVTGKLKIRQTRAVVMEDIEELETA*
Ga0066674_100801691	3300005166	Soil	LLLLLLAVVESNHETVLGMNGLLFGALIMFAGFAVYLVSNKLRILRAKPVVAGKAEELETA*
Ga0066672_105744961	3300005167	Soil	GGIPGAVLAGVFPLLLLLLAVVESNHETVLGMNGLLFGTLIMFAGFVIYFLSGKLKLLRVKPVVAGEMEKLELA*
Ga0066683_1000043712	3300005172	Soil	ESDHETLLGMNGLLFGALIIAAGFLVYLVSGKLNVLRAKPVFPEKIEELETA*
Ga0066680_108943071	3300005174	Soil	FCVPGGMPGAVLAGVSPLALLSLAMVESNHETVLGMNGLLFGVLIIMAGFLIYFVTGKLKIRKTKPVVMETIEELETA*
Ga0066388_1035119723	3300005332	Tropical Forest Soil	ILAVVESNHETVLGMNGLLFGALIMLAGFVVYFVSGRLNLLPAKPVAARETKEFETA*
Ga0066687_100532791	3300005454	Soil	VLTGVFPLLLLLLAVVESNHETVLGMNGLLFGTLIMFAGFVVYFVSGKLKILRAKPVAAGELEELETA*
Ga0066687_101043761	3300005454	Soil	GAVLTGLFPFLLLLLAVVESNQESVLGMNGLFFGALLMFAGFAVYFVSAKLNVLQAKPVTAGRTEERELA*
Ga0070707_1006638261	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ATVEGGHETVLGMNGLLFGAVIIFAGFLIYFVTGKLNILRAKPVVAEKLEEFETV*
Ga0066707_107345072	3300005556	Soil	VFPLALLSLAMVESNHETVLGMNGLLFGVLIIMTGFLIYFATGKLKIRKSKPVVVKSIEELETA*
Ga0066704_101623962	3300005557	Soil	LLSLAIVESGQEAVLGMNGLVFGVLIIVLGVLVYLVTGLLKIRKTKPVVAGEIEELEAV*
Ga0066699_100104941	3300005561	Soil	GGIPGAVLAGVFPLLLLLLAVVESNHETVLGMNGLLFGTLVIFAGFVVYFLSGKLKLLRVKPVVAGETEKLELA*
Ga0066699_105067292	3300005561	Soil	PGGLTGAILTGVFPLLLLLLAVAESDHETLLGMNGLLFGALIIAAGFLVYLVSGKLNVLRAKPVFPEKIEELETA*
Ga0075015_1007630872	3300006102	Watersheds	VESNHETVMGINGLLFGVLIIVGGFLTYFITGKLKLRQTKPVVPEEIEELETA*
Ga0070765_1016768062	3300006176	Soil	MVESGNETVLGMNGLVFGVLIMFAGVVIYYVTGKLNIRHTKPVVIGEIEDLETV*
Ga0066665_101118832	3300006796	Soil	AGVITCGIFPLLLLSLAIVESGQEAVLGMNGLVFGVLIIVLGVLVYLVTGLLKIRKTKPVVAGEIEELEAV*
Ga0099791_103292072	3300007255	Vadose Zone Soil	QETVLGMNGVAVGALIIASGFLVCFVTGKLKIRQTKPVAAGEFEELEAV*
Ga0099793_106846212	3300007258	Vadose Zone Soil	AGVFPLALLSLAMVESNHETVLGINGLLFGVLIIMAGFLIYFATGKLKIRKTKPVVIQNIEELETA*
Ga0099794_100059741	3300007265	Vadose Zone Soil	VPGGLTGAISCGIFPLLLLSLAMVESNHETVLGLNGLVFGALIIMAGFLFYFVTDKLRIRRTKPVVMEEIEELETA*
Ga0099794_100154782	3300007265	Vadose Zone Soil	LTGAISCGIFPLLLLSLAMVESNHETVLGMNGLLFGVLIILAGFLIYFVTGKLKIRQTKPVVAEEIEELETA*
Ga0099829_108043941	3300009038	Vadose Zone Soil	LAMVESNHETVLGMNGLLFGALIIVSGIMLYFVTGKLKIRKTKPVVMEETEDFEAA*
Ga0099830_100554562	3300009088	Vadose Zone Soil	AISCGVFPLLLLSLAMVESNHETVLGLNGLVFGALIIIAGFLIYFVTGKLKIRKTKPVVVEDIEELETA*
Ga0099830_101014372	3300009088	Vadose Zone Soil	AGVFPLALLSLAMVESNHETVLGMNGLLFGALIIMAGFLIYFVTGKLKIRKTKPVVMENIEELETA*
Ga0099830_101235292	3300009088	Vadose Zone Soil	VFPLLLLSLAMAESNHETVLGMKGLLFGVLIIMGGFLTYFVTGKLKIRKTKPVVVEGAEEA*
Ga0099830_107988292	3300009088	Vadose Zone Soil	VESNHETVLGMNGLLFGALIILAGFLVYFITGKLKIRHTKPVVVEEIKELETA*
Ga0099828_100527471	3300009089	Vadose Zone Soil	LSLAMVESNHETVLGLNGLVFGALIIMAGFLIYFVTGKLNIRRTKPVVMEDIEELETA*
Ga0099828_101105512	3300009089	Vadose Zone Soil	LLLLLLAVVESNHETVLGMNGLLFGALIIFAGFLIYFVSGKLKILQVKPVTSEKLEEFETA*
Ga0099828_111967862	3300009089	Vadose Zone Soil	LLSLAMVESNHETVLGLNGLVFGALIIMAGFLIYFVTGKLKIRKTKPVVVEDIEELETA*
Ga0099792_100053928	3300009143	Vadose Zone Soil	LTGAISCGIFPLLLLSLAMVESNHETVLGMNGLLFGVLIILAGFLIYFVTGKLKIRQTKPVVVEEIEELETA*
Ga0099792_109077331	3300009143	Vadose Zone Soil	ISCGIFPLLLLSLAMLESNHETVLGLNGLVFGALIIMAGFLIYFVTGKLKIRRTKPVVMEEIKELEIA*
Ga0126384_100774962	3300010046	Tropical Forest Soil	VPGGITGAVLTGIFPLLLLLLAVVESNHETVLGMNGLLFGTLIILTGFVVYFASAKLKLLHAKPVASSKIEELEMA*
Ga0134088_100536322	3300010304	Grasslands Soil	AGVFPLALLSLAMVESNHETVLGMNGLLFGMLIIVAGVLMYFVTGKLKIRRSKPVLVKSVEELETA*
Ga0134065_102351362	3300010326	Grasslands Soil	LLLLAVVESNHETVLGMDGLLFGALIMFAGFAVYLVSNKLRILRAKPVVAGKAEELETA*
Ga0126376_100271473	3300010359	Tropical Forest Soil	GAVLTGVFPLLLLLLVVVESNHETVLGMNGLLFGILIILTGFVVYFASAKLKLLHAKPVASSKIEELEMA*
Ga0126376_114761552	3300010359	Tropical Forest Soil	ILATVEGGHETVLGMNGLLFGALIIAAGFLIYFVTGKLKIRKTKPVLTGEIEELETA*
Ga0126376_132797271	3300010359	Tropical Forest Soil	PGGLTGAILTGVFPLLLLLLAVVESDHETLLGMNGLLFGALIISAGCIVYFVSGKLNVLRAKPVLPPENIEELA*
Ga0126378_101836232	3300010361	Tropical Forest Soil	MRSRPLLLLLLAVVESNHETVLGMNGLLFGGVIIFAGFLIYFVSGKLKILQAKPVAAQKLEEFETA*
Ga0126378_102063902	3300010361	Tropical Forest Soil	IIRSDHETVLGINGLLFGALIILAGFAVYFVSGKLKILRAKPVVPDQFEELETA*
Ga0126378_104131042	3300010361	Tropical Forest Soil	IIRSDHETVLGINGLLFGALIILAGFAVYFVSGKLKILRANPVVPDQLEELETA*
Ga0126378_104316031	3300010361	Tropical Forest Soil	GAILTGVFPLLLLLLAVVESDHETLLGMNGLVFGALIISAGFMVYFVSGKLHVLRAKPVLPPENIEELA*
Ga0126381_1012868621	3300010376	Tropical Forest Soil	TVLGMNGLLFGALIIFAGFLVYFVSGKLNILHAKSVVAGAVEELETT*
Ga0126381_1036647702	3300010376	Tropical Forest Soil	LAVVESNHETVLGMNGLLFGALIIVAGFVAYFVSDKLKLLHAKPVPPGKTEEFETA*
Ga0126381_1040154302	3300010376	Tropical Forest Soil	AGAVTCGIFPLALLILATVEGGHETVLGMNGLAFGALIIVTGFAIYFVTGKLKIRKTKPVVAAEIEEFETA*
Ga0126383_100691861	3300010398	Tropical Forest Soil	SGIFPLLLLLLAVVESNHETVLGMNGLLFGALIIFAGFLVYFVSGKLNILHAKSVVAGAVEELETT*
Ga0126383_129300411	3300010398	Tropical Forest Soil	NHETVLGMNGLLFGTLIILAGFVAYFASDKLKLLHAKPVTPGNTEEFETA*
Ga0126350_102939801	3300010880	Boreal Forest Soil	IFPLLLLILAMVESESETVLGLNGLVFGALIIVAGFLVYFVMGKLKLRQNKPVTVENAEPV*
Ga0137392_101621322	3300011269	Vadose Zone Soil	LLLLAVVESNHETVLGMNGLLFGALIMFAGFAVYFVSSKLKLLRAKPEVAGEIEELETA*
Ga0137392_102713052	3300011269	Vadose Zone Soil	VPGGLVGAISCGIFPLLLLSLAMVQSNSETVLGINGLLFGVLIIMAGFLIYFVTGKLKIRRTKPIVTGEIEELETA*
Ga0137392_113313171	3300011269	Vadose Zone Soil	VFPLALLSLAMVESNHETVLGVNGLLFGVLVILAEFLIYFVTGKLKIRQTRPVVMEDIEELETA*
Ga0137391_100169115	3300011270	Vadose Zone Soil	VFPLLLLSLAMAESNHETVLGMKGLLFGVLIIMGGFLTYFVTGKLKIRKTKPVVMEDAEEA*
Ga0137391_101579192	3300011270	Vadose Zone Soil	VFPLALLSLAMVESNHETVLGVNGLLFGVLVILAGFLIYFVTGKLKIRQTRPVVMEDIEELETA*
Ga0137391_106146411	3300011270	Vadose Zone Soil	LAMVESNRETVLGLNGLLFGMVIIGAGFLFYFVTGKLKIRKTKPLVIEDAGTA*
Ga0137393_100799593	3300011271	Vadose Zone Soil	VFPLLLLSLAMAESNHETVLGMNGLLFGVLIIMGGFLTYFATGKLKIRKTKPVVMEDAEAA*
Ga0137393_103379411	3300011271	Vadose Zone Soil	GVFPLLLLSLAMVESNHETVLGLNGLVFGALIIVAGFLIYFVTGKLKIRRTKPVRMEDHEELEIA*
Ga0137363_100344982	3300012202	Vadose Zone Soil	ETVLGMNGLLFGALIIMAGFMIYLVSGKLKIRKSKPVVVKSTEELETA*
Ga0137363_103122271	3300012202	Vadose Zone Soil	VITCGIFPLLLLSLAIVESGQEAVLGMNGLVFGVLIIVLGVLVYLVTGLLKIRKTKPVVAGEIEELEAV*
Ga0137363_103553481	3300012202	Vadose Zone Soil	LTGAISCGIFPLLLLSLAMVESNHETVLGMNGLLFGVLIILAGFLIYFVTGKLKIRQTKPVVVEEIE
Ga0137363_111459971	3300012202	Vadose Zone Soil	ISCGIFPLLLLSLAMVESNHETVLGMNGLLFGVLIILAGFLIYFVTGKLKIRQTKPVVVEEIEELETA*
Ga0137399_106218262	3300012203	Vadose Zone Soil	SLAIVESGHETVLGINGLAFGAVIIASGFLVYFVTGKLKIRRTKPVVAGEVEELEAV*
Ga0137399_109937961	3300012203	Vadose Zone Soil	SGQETVLGMNGLVFGAWIIASGFLVYLVTGMLKIRKTKRVVAGEIEELEAV*
Ga0137381_116848851	3300012207	Vadose Zone Soil	PGGLTGAISCGIFPLLLLSLAMVESNHETVLGLNGLVFGALIIVAGFLIYFVTGKLKIRRTKPVVMEDIEELETA*
Ga0137379_115447212	3300012209	Vadose Zone Soil	GGLIGAVLTGVFPLLLLLLAVMASNHETVLGMNGLLFGALIILTGFAVYFVSGKLKILRAKPVVTGKMEELETA*
Ga0137377_106374691	3300012211	Vadose Zone Soil	LLAVVESDHETLLGMNGLLFGALIISAGFVAYFLSSKLNVLRAKPVLPEKVEELA*
Ga0137386_103630422	3300012351	Vadose Zone Soil	GAVLTGVFPLLLLLLAVVESNQETVLGMNGLLFGTVIMLVGFLVYFVSGKLKLLRAKPVSPAKIKELEIA*
Ga0137386_103691751	3300012351	Vadose Zone Soil	MAGAVLAGVFPLALLSLAMIESNHETVLGMNGLLFGVLIIVAGFLVYFATGKLKIRRSKPVVVKNIEELETA*
Ga0137366_109788842	3300012354	Vadose Zone Soil	VLTGVFPLLLLLLAVVESNQETVLGMNGLLFGTVIMLVGFLVYFVSGKLKLLRAKPVSPAKIKELEIA*
Ga0137361_109538422	3300012362	Vadose Zone Soil	PLLLLSLAMVESNHETVLGLNGLVFGALIIVAGFLIYFVTGKLQIRKTKPVMMKEIEDLETA*
Ga0137358_108262532	3300012582	Vadose Zone Soil	LLSLAMLESNHETVLGLNGLVFGALIIVAGFLIYSVTGKLKIRRTKPVVLEDIEELETA*
Ga0137397_112917201	3300012685	Vadose Zone Soil	GQETVLGMNGLVFGAWIIASGVLVYLVTGMLKIRKTKPVVAGEIEELEAV*
Ga0137395_103636802	3300012917	Vadose Zone Soil	PLLLLSLAIVESGQETVLGMNGLVFGAWIIASGFLVYLVTGMLKIRKTKPVVAGEIEELETV*
Ga0137396_101441231	3300012918	Vadose Zone Soil	SCGIFPLLLLSLAMVESNHETVMGVNGLLFGVLIILAGFLIYFVTGKLKIRQTKPVVMEKIEELETA*
Ga0137396_113123892	3300012918	Vadose Zone Soil	LLSLAIVESGQETVLRMNGLVFGVLIIASGVLVYIVTGLLKIRKTKPAVAGEIEELEAV*
Ga0137359_114499252	3300012923	Vadose Zone Soil	AISCGIFPLLRLSLAMLESNHETVLGLIGLVFGALIIVAGFLIYSVTGKLKIRRTKPVVLEDIEELETA*
Ga0137419_118736711	3300012925	Vadose Zone Soil	MAGAILAGVFPLALLSLAMVESNRETVLGMNGLLFGVLIIMAGFMIYLVSGKLKIRKSKPVVVKSIEELESA*
Ga0137416_103659482	3300012927	Vadose Zone Soil	GAISCGVFPLLLLSLSMVESNHETVLGINGLLFGVLIILAGFLTYFITGKLKIRKTKPVVPEEIEDLETA*
Ga0137404_107188471	3300012929	Vadose Zone Soil	PLLLLSLAIVESGRETVLGMNGLMFGTLIIVSGFLVYLATGMLKIRKTKPVASGEIEELGAV*
Ga0137404_114517642	3300012929	Vadose Zone Soil	VLAGVFPLALLSLAMIESNHETVLGMNGLLFGVLIIVAGFLVYFATGKLKIRRSKPVVVKNIEELETA*
Ga0137407_119617181	3300012930	Vadose Zone Soil	SCGIFPLLLLSLAMMESNKETVLGMNGLHFGVLIIMSGFVIYFVTGKLELRKTKPVVMGEIEELETA*
Ga0126369_129432951	3300012971	Tropical Forest Soil	LLLLAVMESNHETVLGINGLLFGALIMLAGVAVYVVSGKLKILRAKPVVPDKFEELETA*
Ga0134078_100345942	3300014157	Grasslands Soil	LSLAMVESNHETVLGMNGLLFGVLIIMAGFLIYFAIRKLKIRKSKPVVVKSIEELETA*
Ga0134089_101308242	3300015358	Grasslands Soil	LKRGFLVPGGLTGAISCGVFPLLLLSLAMVESNHETVLGMNGLVFGALIIVAGFLIYFVTGKLKIRRTKPVVMEDIEELETA*
Ga0187776_114693912	3300017966	Tropical Peatland	AILLGVFPLLLLLLAMVESNHETVLGINGLVFGTMIMFAGFVIYFVSRKLKILQAKPVMAEEMESAETA
Ga0066655_110027972	3300018431	Grasslands Soil	VLTGVFPLLLLLLAVVESNHETVLGMNGLLFGTLIMFAGFVVYFVSGKLKILRAKPVAAGELEELETA
Ga0137408_11175061	3300019789	Vadose Zone Soil	RGERPGNRARDESGQETVLGMNGLAFGALIIASGFLVYFVTGKLKIRQTKPVAAGEFEELEAV
Ga0137408_11794512	3300019789	Vadose Zone Soil	EAVLGMNGLVFGVLIIVLGVLVYLVTGLLKIRKTKPVVAGEIEELEAV
Ga0210407_103116241	3300020579	Soil	MVESNHETVLGMNGLLFGVLIILAGFSVYFVTGALEIRKTKPVARQEIEDLETA
Ga0210393_100013961	3300021401	Soil	MMGAVTCGIFPLLLLCLAMVESGNETVLGMNGLAFGVLIMFAGVVIYYVTGKLKIRHTKPVVIGEIENLETV
Ga0210394_102404452	3300021420	Soil	LCLAMIESGHETVLGMNGLVFGVLIMFAGVVIYYVTGKLKLRHTKPVVIGEIEDLETA
Ga0210410_114373721	3300021479	Soil	CGVFPLLLLSLAMVESNHETVLGLNGLLFGALIILAGFLIYFVTGKLKIRHTKPVVLEEIEELETA
Ga0247666_11169541	3300024323	Soil	AMVESNHETVLGLNGLVFGAFIIMAGFLIYFVTGKLKIRKTKPVRMEDHEELGIA
Ga0209237_11685452	3300026297	Grasslands Soil	PLLLLLLAVVESNHETVLGMNGLLFGAVIIFAGFLIYFVTGKLKILQAKPVVAERLEEFETV
Ga0209237_11814462	3300026297	Grasslands Soil	EPELKRGFLVPGGLTGAISCGVFPLLLLSLAMVESNHETVLGLNGLVFGALIIVAGFLIYFVTGKLKIRRTKPVVMEDIEELETA
Ga0209267_12928221	3300026331	Soil	HETLLGMNGLLFGALIIAAGFLVYLVSGKLNVLRAKPVFPEKVEELETA
Ga0209803_100008350	3300026332	Soil	HETLLGMNGLLFGALIIAAGFLVYLVSGKLNVLRAKPVFPEKIEELETA
Ga0257164_10461071	3300026497	Soil	ESGQETVLGMNGLVFGAWIIALGVLVYLVTGMLKIRKTKPVVAGEIEELEAV
Ga0209160_11049041	3300026532	Soil	PLLLLSLAIVESGQEAVLGMNGLVFGVLIIVLGVLVYLVTGLLKIRKTKPVVAGEIEELEAV
Ga0209056_106265061	3300026538	Soil	VFPLLLLLLAVVESNHETVLGMNGLLFGALIMFAGFAVYLVSNKLRILRAKPVVAGKTEELETA
Ga0209648_100079532	3300026551	Grasslands Soil	VFPLALLSLAMVESNHETVLGVNGLLFGVLVILAGFLIYFVTGKLKIRQTRAVVMEDIEELETA
Ga0209648_104329221	3300026551	Grasslands Soil	AISCGIFPLLLLSLAMVEGNHETVLGMNGLLFGVLIIMAGFLIYLVTGKLKIRHTKPVVIGEIDELETA
Ga0208241_10559581	3300027297	Forest Soil	FPLLLLVLALVESNHETVLGINGLLFGTIIMGAGFLIYFVTGKLNIRHTKPVVIEKFEDLETA
Ga0209588_10291182	3300027671	Vadose Zone Soil	LTGAISCGIFPLLLLSLAMVESNHETVLGMNGLLFGVLIILAGFLIYFVTGKLKIRQTKPVVVEEIEELETA
Ga0209178_10029984	3300027725	Agricultural Soil	ESNHETVLGMNGLLFGTLIILAGFFVYFVSGKLNVFRLKPVASGKGEEFETA
Ga0209701_102052982	3300027862	Vadose Zone Soil	LTGAISCGIFPLLLLSLAMLESNHETVLGLNGLVFGALIIAAGFLIYFVTGKLKIRRTKSVVLEDIEELETA
Ga0308309_112155701	3300028906	Soil	LLLLCLAMVESGNETVLGMNGLVFGVLIMFAGVVIYYVTGKLNIRHTKPVVIGEIEDLET
Ga0222749_106945832	3300029636	Soil	PGAISCGVFPLLLLTLAMVESNHETVLGVNGLLFGVLIILAGFSIYFVTGALEIRKTKPVARQEIEDLETA
Ga0307477_102442461	3300031753	Hardwood Forest Soil	LPGAISCGIFPLLLLTLAMVEGNSETVLGMNALLFGVAIMLAGFALYYITGVLKIRTSKPMKQEEIEDLEAA
Ga0307477_103700321	3300031753	Hardwood Forest Soil	PGGLPGAISCGIFPLLLLTLSMVESNHETVMGINGLLFGVLIIIGGFVTYFITGKLKIRQAKPVVPGEIEELETA
Ga0307475_113894321	3300031754	Hardwood Forest Soil	SNHETVLGINGLVFGALIMLAGFAVYFVTRKLKILRANPVLPEKIEELETA
Ga0307473_102844812	3300031820	Hardwood Forest Soil	PGGMPGAILAGVFPLALLTLAMVESNHETVLGVNGLLFGALIVVTGFLIYFVTGKLKIRKTKPVVMENIEELETA
Ga0310916_100179894	3300031942	Soil	PLLLLLLAVVESDHETLLGMNGLVFGALIISAGFMVYFVSGKLHVLRAKPVLPPENIEEL
Ga0318510_102194591	3300032064	Soil	VESDHETLLGMNGLVFGALIISAGFMVYFVSGKLHVLRAKPVLPPENIEELA
Ga0307472_1000555042	3300032205	Hardwood Forest Soil	GVFPLALFTLAMVESNHETVLGVNGLLFGALIVVAGFLIYFVTGKLKIRRTKPVVMENIEELETA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081561

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences