NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F081539

Metagenome Family F081539

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F081539
Family Type Metagenome
Number of Sequences 114
Average Sequence Length 45 residues
Representative Sequence PRLTYQSNNIIFCCFGCNDRKKNSIPDDWKNFIRVGKELKND
Number of Associated Samples 94
Number of Associated Scaffolds 114

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 92.98 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (92.105 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(28.070 % of family members)
Environment Ontology (ENVO) Unclassified
(75.439 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(85.088 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 7.14%    β-sheet: 18.57%    Coil/Unstructured: 74.29%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 114 Family Scaffolds
PF12705PDDEXK_1 3.51
PF03592Terminase_2 2.63
PF13443HTH_26 1.75
PF00145DNA_methylase 0.88
PF00583Acetyltransf_1 0.88
PF00685Sulfotransfer_1 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 114 Family Scaffolds
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 2.63
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.88


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.11 %
All OrganismsrootAll Organisms7.89 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10025361Not Available3356Open in IMG/M
3300000115|DelMOSum2011_c10071462Not Available1248Open in IMG/M
3300000115|DelMOSum2011_c10073741All Organisms → Viruses → Predicted Viral1216Open in IMG/M
3300000116|DelMOSpr2010_c10211480Not Available614Open in IMG/M
3300001450|JGI24006J15134_10253889Not Available503Open in IMG/M
3300001460|JGI24003J15210_10015807Not Available2958Open in IMG/M
3300002482|JGI25127J35165_1078160All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300005057|Ga0068511_1103877Not Available509Open in IMG/M
3300005078|Ga0070770_10171870Not Available1299Open in IMG/M
3300005086|Ga0072334_10425319Not Available509Open in IMG/M
3300005239|Ga0073579_1054880Not Available1364Open in IMG/M
3300005239|Ga0073579_1331124Not Available799Open in IMG/M
3300006027|Ga0075462_10198702All Organisms → cellular organisms → Bacteria → Proteobacteria603Open in IMG/M
3300006191|Ga0075447_10096805Not Available1026Open in IMG/M
3300006737|Ga0098037_1105180All Organisms → cellular organisms → Bacteria → Proteobacteria975Open in IMG/M
3300006749|Ga0098042_1166625Not Available535Open in IMG/M
3300006753|Ga0098039_1251817All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Rosemountvirus → Rosemountvirus yarpen594Open in IMG/M
3300006789|Ga0098054_1253649Not Available634Open in IMG/M
3300006869|Ga0075477_10148102Not Available982Open in IMG/M
3300006916|Ga0070750_10422031Not Available554Open in IMG/M
3300007234|Ga0075460_10073976Not Available1249Open in IMG/M
3300007234|Ga0075460_10233368Not Available618Open in IMG/M
3300007276|Ga0070747_1318387Not Available533Open in IMG/M
3300007538|Ga0099851_1176118Not Available787Open in IMG/M
3300007539|Ga0099849_1102090Not Available1142Open in IMG/M
3300008218|Ga0114904_1083015Not Available795Open in IMG/M
3300008221|Ga0114916_1093231Not Available741Open in IMG/M
3300009001|Ga0102963_1325966Not Available603Open in IMG/M
3300009135|Ga0118736_10125062Not Available735Open in IMG/M
3300009409|Ga0114993_10425661Not Available995Open in IMG/M
3300009420|Ga0114994_10282468Not Available1108Open in IMG/M
3300009422|Ga0114998_10579771Not Available528Open in IMG/M
3300009433|Ga0115545_1302909Not Available531Open in IMG/M
3300009433|Ga0115545_1326592Not Available508Open in IMG/M
3300009435|Ga0115546_1281673Not Available568Open in IMG/M
3300009435|Ga0115546_1331292Not Available518Open in IMG/M
3300009438|Ga0115559_1184256Not Available760Open in IMG/M
3300009507|Ga0115572_10160553All Organisms → Viruses → Predicted Viral1315Open in IMG/M
3300009526|Ga0115004_10629475Not Available636Open in IMG/M
3300009605|Ga0114906_1216322Not Available636Open in IMG/M
3300009785|Ga0115001_10247275Not Available1142Open in IMG/M
3300010148|Ga0098043_1008293Not Available3487Open in IMG/M
3300010148|Ga0098043_1020479All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.2128Open in IMG/M
3300010148|Ga0098043_1074693All Organisms → Viruses → Predicted Viral1011Open in IMG/M
3300010148|Ga0098043_1104838Not Available823Open in IMG/M
3300010148|Ga0098043_1169376Not Available613Open in IMG/M
3300010149|Ga0098049_1282228Not Available502Open in IMG/M
3300010151|Ga0098061_1221416Not Available666Open in IMG/M
3300011118|Ga0114922_11355727Not Available573Open in IMG/M
3300012952|Ga0163180_11795398Not Available521Open in IMG/M
3300013010|Ga0129327_10086305Not Available1546Open in IMG/M
3300017697|Ga0180120_10179737Not Available885Open in IMG/M
3300017732|Ga0181415_1053954Not Available913Open in IMG/M
3300017733|Ga0181426_1015962Not Available1473Open in IMG/M
3300017740|Ga0181418_1099333Not Available705Open in IMG/M
3300017741|Ga0181421_1123176Not Available672Open in IMG/M
3300017745|Ga0181427_1023360Not Available1542Open in IMG/M
3300017756|Ga0181382_1047470Not Available1247Open in IMG/M
3300017762|Ga0181422_1177823Not Available647Open in IMG/M
3300017765|Ga0181413_1222462Not Available560Open in IMG/M
3300017768|Ga0187220_1134017Not Available749Open in IMG/M
3300017770|Ga0187217_1048036Not Available1491Open in IMG/M
3300017770|Ga0187217_1256489Not Available570Open in IMG/M
3300017771|Ga0181425_1048173Not Available1389Open in IMG/M
3300017771|Ga0181425_1063790Not Available1193Open in IMG/M
3300017772|Ga0181430_1225814Not Available531Open in IMG/M
3300017773|Ga0181386_1205333Not Available591Open in IMG/M
3300017781|Ga0181423_1111649Not Available1066Open in IMG/M
3300018036|Ga0181600_10174915Not Available1170Open in IMG/M
3300018416|Ga0181553_10430448Not Available713Open in IMG/M
3300020176|Ga0181556_1140507Not Available1010Open in IMG/M
3300020472|Ga0211579_10189354Not Available1199Open in IMG/M
3300020601|Ga0181557_1275340Not Available568Open in IMG/M
3300021365|Ga0206123_10438122Not Available532Open in IMG/M
3300021373|Ga0213865_10249848Not Available850Open in IMG/M
3300021964|Ga0222719_10732242Not Available553Open in IMG/M
3300022187|Ga0196899_1215917Not Available502Open in IMG/M
3300022200|Ga0196901_1178707Not Available692Open in IMG/M
3300022925|Ga0255773_10128428Not Available1271Open in IMG/M
3300023175|Ga0255777_10425812Not Available708Open in IMG/M
3300025085|Ga0208792_1085298Not Available560Open in IMG/M
3300025086|Ga0208157_1034997Not Available1427Open in IMG/M
3300025120|Ga0209535_1179647Not Available625Open in IMG/M
3300025127|Ga0209348_1166730Not Available638Open in IMG/M
3300025132|Ga0209232_1199744Not Available611Open in IMG/M
3300025137|Ga0209336_10169330Not Available562Open in IMG/M
3300025137|Ga0209336_10181209Not Available532Open in IMG/M
3300025138|Ga0209634_1028038Not Available3024Open in IMG/M
3300025138|Ga0209634_1305674Not Available544Open in IMG/M
3300025769|Ga0208767_1042377Not Available2208Open in IMG/M
3300025818|Ga0208542_1134758Not Available682Open in IMG/M
3300025849|Ga0209603_1238203Not Available670Open in IMG/M
3300025869|Ga0209308_10133469Not Available1160Open in IMG/M
3300025894|Ga0209335_10104475Not Available1477Open in IMG/M
3300027522|Ga0209384_1086051Not Available770Open in IMG/M
3300027704|Ga0209816_1090915Not Available1217Open in IMG/M
3300027779|Ga0209709_10334695Not Available629Open in IMG/M
3300027791|Ga0209830_10421907Not Available563Open in IMG/M
3300027813|Ga0209090_10292243Not Available811Open in IMG/M
3300028125|Ga0256368_1074451Not Available580Open in IMG/M
3300031143|Ga0308025_1247231Not Available593Open in IMG/M
3300031519|Ga0307488_10312391Not Available1007Open in IMG/M
3300031519|Ga0307488_10381095Not Available878Open in IMG/M
3300031519|Ga0307488_10390675Not Available863Open in IMG/M
3300031519|Ga0307488_10396766Not Available854Open in IMG/M
3300031519|Ga0307488_10428217Not Available810Open in IMG/M
3300031519|Ga0307488_10784387Not Available529Open in IMG/M
3300031569|Ga0307489_11123360Not Available565Open in IMG/M
3300031696|Ga0307995_1123798Not Available983Open in IMG/M
3300033742|Ga0314858_047251All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.1035Open in IMG/M
3300033742|Ga0314858_078167Not Available828Open in IMG/M
3300033742|Ga0314858_141795Not Available616Open in IMG/M
3300034374|Ga0348335_020409Not Available3208Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine28.07%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater14.04%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous11.40%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine7.02%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine6.14%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh5.26%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine3.51%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.51%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.51%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean2.63%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.75%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.75%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.75%
WaterEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Water1.75%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.88%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water0.88%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.88%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.88%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.88%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.88%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.88%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.88%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment0.88%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300002482Marine viral communities from the Pacific Ocean - ETNP_2_30EnvironmentalOpen in IMG/M
3300005057Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2umEnvironmentalOpen in IMG/M
3300005078Microbial Community from Halfdan Field MHBA5EnvironmentalOpen in IMG/M
3300005086Microbial Community from Halfdan Field MHDA3EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008218Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6EnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009135Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsfEnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300010148Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaGEnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020472Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)EnvironmentalOpen in IMG/M
3300020601Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011506CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022925Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaGEnvironmentalOpen in IMG/M
3300023175Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaGEnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025127Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300025869Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)EnvironmentalOpen in IMG/M
3300025894Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)EnvironmentalOpen in IMG/M
3300027522Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031143Marine microbial communities from water near the shore, Antarctic Ocean - #422EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031569Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2EnvironmentalOpen in IMG/M
3300031696Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_10025361103300000101MarineYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINNE*
DelMOSum2011_1007146213300000115MarineQQNNIIFCCVGCNDRKKNSTPDDWKNFIRVEKELKHDG*
DelMOSum2011_1007374113300000115MarineQQNNIIFCCVGCNDRKKNSTPDDWKNFIRVEKELINDQDK*
DelMOSpr2010_1021148013300000116MarineGTQNPNNFSIDRLDPRLTYQNNIIFCCVGCNDRKKNSTPDDWKNFIRVEKELINDQDK*
JGI24006J15134_1025388933300001450MarineWDPRLTYRTDNIIFCCVACNDKKRDSTPEDWKNFLRVGKEFRSD*
JGI24003J15210_1001580713300001460MarineTYQSDNIIFCCFGCNDRKHNSNPDDWKNFIRVGKELQNRTKDNHEG*
JGI25127J35165_107816013300002482MarineIDRYDPRLTYMTDNIVFCCVSCNDKKRDSNPSDWLNYLRVGLEFKRD*
Ga0068511_110387713300005057Marine WaterYDPRLTYMTDNIIFCCVACNDKKRDSNPSDWLNYLRVGLEFKRD*
Ga0070770_1017187043300005078WaterNHNNFSIDRWDPKLTYQNNNIIFCCTGCNDRKKNSTPDDWKNFIRVGEELIND*
Ga0072334_1042531913300005086WaterTYQNNNIIFCCFGCNDRKHNSNPDDWKNYLRVGEEFKSD*
Ga0073579_105488013300005239MarineNFSIDRWDPKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINNE*
Ga0073579_133112413300005239MarineNFSIDRWDPRLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRIGMEINNV*
Ga0075462_1019870213300006027AqueousYQNNNIVFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDK*
Ga0075447_1009680513300006191MarinePRLSYNIDNIVFCCVGCNDRKRNSNPNDWKNFIRVGREIKTGKY*
Ga0098037_110518013300006737MarineTYMTDNIVFCCVSCNDKKRDSNPSDWLNYLRVGLEFKRD*
Ga0098042_116662523300006749MarineQNHTNFSIDRYDPRITYQSNNIIFCCFGCNDRKHNSNPDDWKNYLRIGKELKNDQDK*
Ga0098039_125181723300006753MarinePRLTYMTDNIVFCCVACNDKKRDSNPSDWLNYLRVGLEFKRD*
Ga0098054_125364913300006789MarineTQNHTNFSIDRYDPRITYQSNNIIFCCFGCNDRKHNSNPDDWENYLRIGKELKNDKDK*
Ga0075477_1014810213300006869AqueousDRFDPRLTYQSNNIIFCCFGCNDRKHNSTPDDWKNFIRVEKELINDQDK*
Ga0070750_1042203113300006916AqueousFSIDRWDPKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINNE*
Ga0075460_1007397633300007234AqueousFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDK*
Ga0075460_1023336813300007234AqueousNNIIFCCFGCNDRKHNSTPDDWKNYLRIGKELIND*
Ga0070747_131838733300007276AqueousKGQIKTNFSLDRWDPRLTYRTDNIIFCCVACNDKKRDSNPDDWKNFLRVGKEFRND*
Ga0099851_117611813300007538AqueousRGTQNYNNFSIDRYDPRITYKQNNIIFCCFGCNDRKKNSTPDDWKNFIRVEKELKNDQDK
Ga0099849_110209043300007539AqueousIVFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDQ*
Ga0110931_118829223300007963MarineAIDRFYNSTTYRSQNIIFCCSGCNDRKRDSIPDDWKNFLRVLKEKTE*
Ga0114904_108301513300008218Deep OceanPRLTYMTDNIVFCCVSCNDKKRDSNPSDWLNYLRVGLEFKRD*
Ga0114916_109323123300008221Deep OceanIDNIVFCCVGCNDRKRNSNPNDWKNFIRVGREIKTGKY*
Ga0102963_132596633300009001Pond WaterLDPRLTYQQNNIIFCCFGCNDRKKNNTTDDWKNFIRVEKELKNDR*
Ga0118736_1012506233300009135Marine SedimentDNIVFCCVACNDKKRDSNPDDWKNYLRVGEEFRSD*
Ga0114993_1042566113300009409MarineVSIDRWDPRLTYQDNNIIFCCINCNDKKRNSNPDDWKNYQRVGKEINND*
Ga0114994_1028246813300009420MarineKCYQGRIKHNHDIISIDLWDPKLTNQKNHIIFCCVGCNYRKKNSTPDDWKNFIRVGKEINNV*
Ga0114998_1057977113300009422MarineGQHKTNVSIDRWDPRLTYEANNIIFSCVDCNDKKRNSNPDDWKNYIRVGKEKIHD*
Ga0115545_130290913300009433Pelagic MarineDPRLTYRTDNIIFCCVACNDKKRDSNPDDWKNYLRVGEEFIND*
Ga0115545_132659213300009433Pelagic MarineTQNPNNFSIDRWDPRLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKELKND*
Ga0115546_128167313300009435Pelagic MarineYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRIGMEINNV*
Ga0115546_133129233300009435Pelagic MarineYQNNNIIFCCFGCNDRKHHSNSDDWKNYLRVGEEFKSD*
Ga0115559_118425623300009438Pelagic MarineVFCCVGCNDRKHNSNPDDWNNYLRIGKELINDQDK*
Ga0115572_1016055313300009507Pelagic MarineDRYDPRLTYRTDNIIFCCVACNDKKRDSNPDDWKNYLRVGEEFIND*
Ga0115004_1062947513300009526MarineNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKERIND*
Ga0114906_121632223300009605Deep OceanDRFDPRLTYQDNNIIFCCVGCNDRKHNSNPDDWKNYLRIEKELINDQDK*
Ga0115001_1024727513300009785MarineSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEIIND*
Ga0098043_100829313300010148MarineYDPRLTYITSNIIFCCVSCNDKKRNSNPDDWKNFLRVGEESVDD*
Ga0098043_102047953300010148MarineWDPRLTYEINNVIFCCVGCNEKKKNSNPDDWKNFLRVGKESVDD*
Ga0098043_107469313300010148MarinePKNRATQNYNNFSIDRFDPRLTYQNNNIIFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDK*
Ga0098043_110483813300010148MarineTNFSIDRYDPRITYQSNNIIFCCFGCNDRKHNSNPDDWKNFLRVGKENVDD*
Ga0098043_116937613300010148MarineRYDPRLTYMTDNIVFCCVACNDKKRDSNPSDWLNYLRVGLEFKRD*
Ga0098049_128222823300010149MarineNIVFCCVGCNDRKHNSNPDDWENYLRIGKELIDDKDQ*
Ga0098061_122141613300010151MarineLTYMASNIIFCCVNCNDKKRNSNPDDWKNFLRVGKEFIND*
Ga0114922_1135572723300011118Deep SubsurfaceDPRLTYQSNNIIFCCFGCNDRKHNSTPDDWKNYLRIGKELINDQDK*
Ga0163180_1179539813300012952SeawaterRWDPRLTYEINNVIFCCVGCNEKKKNSNPDDWKNFLRVGKESVDD*
Ga0129327_1008630513300013010Freshwater To Marine Saline GradientTYQNNNIVFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDQ*
Ga0180120_1017973713300017697Freshwater To Marine Saline GradientRITYKQNNIIFCCFGCNDRKHNSNPDDWKNYLRIGKELINDQDK
Ga0181415_105395423300017732SeawaterRGKGQPKSRATQNYNNFSIDRFDPRLTYQHNNIIFCCVGCNDRKHNSNPDDWKNFERIGKELINDQDK
Ga0181426_101596243300017733SeawaterDPRLTYQNNNIVFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDK
Ga0181418_109933313300017740SeawaterDRYDPRLTYMTDNIVFCCVSCNDKKRDSNPSDWLNYLRVGLEFKRD
Ga0181421_112317613300017741SeawaterLTYQHNNIIFCCVGCNDRKHNSNPDDWKNFERIGKELTNDKDK
Ga0181427_102336043300017745SeawaterDPRLTYQHNNIIFCCVGCNDRKHNSNPDDWENYLRIGKELKNDKDK
Ga0181382_104747013300017756SeawaterTDNIVFCCVACNDKKRDSNPDDWKNYLRVGKEFRHD
Ga0181422_117782313300017762SeawaterRFDPRLTYQHNNIIFCCVGCNDRKHNSNPDDWKNFERIGKELTNDKDK
Ga0181413_122246213300017765SeawaterTRLTYQHNNIIFCCVGCNDRKHNSNPDDWKNFERIGKELINDQDK
Ga0187220_113401713300017768SeawaterGKGQPKSRATQNYNNFSIDRFDPRLTYQHNNIIFCCVGCNEKKKNSNPDDWKNFLRVGKENVDD
Ga0187217_104803613300017770SeawaterDPRITYQSNNIIFCCFGCNDRKHNSNPDDWENYLRIGKELINDQDK
Ga0187217_125648913300017770SeawaterIVFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDQ
Ga0181425_104817313300017771SeawaterQNYNNFSIDRFDPRLTYQHNNIIFCCVGCNDRKHNSNPDDWKNFERIGKELINDQDK
Ga0181425_106379013300017771SeawaterNFSIDRFDPRLTYQSNNIIFCCVGCNDRKHNSNPDDWKNYLRVGKEFRHD
Ga0181430_122581423300017772SeawaterFDPRLTYQSDNIIFCCVGCNDRKHNSNPDDWKNYLRIGKELINDQDK
Ga0181386_120533333300017773SeawaterRLTYMTDNIVFCCVACNDKKRDSNPDDWKNYLRVGKEFRHD
Ga0181423_111164933300017781SeawaterFDPRLTYQHNNIIFCCVGCNDRKHNSNPDDWKNFERIGKELTNDKDK
Ga0181600_1017491513300018036Salt MarshRFDPRLTYQNNNIVFCCVGCNDRKHNSNPDDWKNFIRVEKELINDKDK
Ga0181553_1043044813300018416Salt MarshNIIFCCFGCNDRKKNSTPDDWKNFIRVEKELKNDQDK
Ga0181556_114050713300020176Salt MarshNNVVFCCCGCNDRKKNSTPDDWKNFIRVEKELKNDQDK
Ga0211579_1018935413300020472MarineTDNIVFCCVACNDKKRDSNPSDWLNYLRVGLEFKRD
Ga0181557_127534013300020601Salt MarshDPRLIYQTNNIVFCCCGCNDRKKNSTPDDWKNFIRVEKELKNDQDK
Ga0206123_1043812213300021365SeawaterQTKTNFSIDRYDPRLTYRTDNIIFCCVACNDKKRDSNPDDWKNYLRVGEEFIND
Ga0213865_1024984833300021373SeawaterDPRLTYQNNNIVFCCVGCNDRKHNSNPDDWKNFIRVEKELINDKDK
Ga0222719_1073224213300021964Estuarine WaterNNIVFCCVGCNDRKHNSNPDDWENYLRIGKELKNERE
Ga0196899_121591713300022187AqueousFSIDRYDPRLTYQSNNIIFCCFGCNDRKHNSTPDDWKNYLRIGKELIND
Ga0196901_117870723300022200AqueousPNRGTQNYNNFSIDRYDPRLTYQSNNIIFCCFGCNDRKHNSTPDDWKNYLRIGKELIND
Ga0255773_1012842843300022925Salt MarshQTNNIVFCCFGCNDRKKNSTPDDWKNFIRVEKELKNDQDK
Ga0255777_1042581233300023175Salt MarshDNIIFCCVACNDKKRDSNPDDWKNYLRVGREFVSD
Ga0208792_108529823300025085MarineNFSIDRYDPRLTYITSNIIFCCVSCNDKKRNSNPDDWKNFLRVGKEFISD
Ga0208157_103499753300025086MarineRLTYMTDNIVFCCVSCNDKKRDSNPSDWLNYLRVGLEFKRD
Ga0209535_117964723300025120MarineFSIDRWDPRLTYRTDNIIFCCVNCNDKKRNSNPDDWKNYLRVGKEFIND
Ga0209348_116673023300025127MarineLTYQSDNIIFCCVGCNDRKHNSNPDDWKNYLRIGKELINDQDK
Ga0209232_119974413300025132MarineLTYMTDNIVFCCVSCNDKKRDSNPSDWLNYLRVGLEFKRD
Ga0209336_1016933013300025137MarineNFSLDRWDPRLTYRTDNIIFCCVACNDKKRDSTPEDWKNFLRVGKEFRSD
Ga0209336_1018120933300025137MarineNFSLDRWDPRLTYRTDNIIFCCVACNDKKRDSNPDDWKNFLRVGKEFRND
Ga0209634_102803813300025138MarinePTNFSIDRWDPRLTYEKNNVIFCCVSCNEKKKNSNPDDWKNFLRVGKESVDD
Ga0209634_130567413300025138MarineIKTNFSLDRWDPRLTYRTDNIIFCCVACNDKKRDSNPDDWKNFLRVGKEFRND
Ga0208767_104237713300025769AqueousNIIFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDK
Ga0208542_113475823300025818AqueousDRYDPRLTYQSNNIIFCCFGCNDRKHNSTPDDWKNYLRIGKELIND
Ga0209603_123820313300025849Pelagic MarineKQNNIIFCCFGCNDRKKNSIPDDWKNFIRVGKELKND
Ga0209308_1013346913300025869Pelagic MarinePRLTYQSNNIIFCCFGCNDRKKNSIPDDWKNFIRVGKELKND
Ga0209335_1010447553300025894Pelagic MarinePRLTYMASNIIFCCVNCNDKKRNSNPDDWKNFLRVGEEFRSD
Ga0209384_108605133300027522MarineYKYNNVVFCCVGCNQRKRDSNPEDWTNYIRVGREIGYDT
Ga0209816_109091513300027704MarineYNIDNIVFCCVGCNDRKRNSNPNDWKNFIRVGREIKTGKY
Ga0209709_1033469513300027779MarineMDRWDPRLTYQDNNIIFSCVNCNDKKRNSNPDDWKNYQRVGKERTND
Ga0209830_1042190733300027791MarineIDRWDPKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINDE
Ga0209090_1029224323300027813MarineTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINNV
Ga0256368_107445113300028125Sea-Ice BrineLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEIIND
Ga0308025_124723113300031143MarineKYNNVVFCCVGCNQRKRDSNPNDWNNYIRVGGEIGYGT
Ga0307488_1031239113300031519Sackhole BrineRWDPKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINND
Ga0307488_1038109533300031519Sackhole BrineDPKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINNE
Ga0307488_1039067533300031519Sackhole BrinePKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINNE
Ga0307488_1039676613300031519Sackhole BrineDPKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEINNV
Ga0307488_1042821723300031519Sackhole BrineDNIIFCCVACNDKKRDSNPDDWKNYIRVGKEKIHD
Ga0307488_1078438733300031519Sackhole BrineIKTNFSLDRWDPRLTYMASNIIFCCVNCNDKKRNSNPEDWKNFLRVGKEFRSD
Ga0307489_1112336033300031569Sackhole BrineKGQIKTNFSLDRWDPRLTYRTDNIIFCCVACNDKKRDSTPEDWKNFLRVGKEFRSD
Ga0307995_112379813300031696MarineLSYNIDNIVFCCVGCNDRKRNSNPNDWKNFIRVGREIKTGKY
Ga0314858_047251_3_1223300033742Sea-Ice BrineSYQANNIIFSCVNCNDKKRDSNPDDWKNYQRVGKEKIDD
Ga0314858_078167_674_8263300033742Sea-Ice BrineNVSMDRWDPRLTYQANNIIFCCVNCNDKKRNSNPDDWKNYQRVGKERTND
Ga0314858_141795_1_1263300033742Sea-Ice BrineKLTYQSNNIIFCCGGCNDRKKNSTPDDWKNFIRVGKEIIND
Ga0348335_020409_3_1133300034374AqueousIVFCCVGCNDRKHNSNPDDWENYLRIGKELINDKDK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.