NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F081353

Metagenome / Metatranscriptome Family F081353

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F081353
Family Type Metagenome / Metatranscriptome
Number of Sequences 114
Average Sequence Length 37 residues
Representative Sequence MGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK
Number of Associated Samples 91
Number of Associated Scaffolds 114

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 5.26 %
% of genes near scaffold ends (potentially truncated) 20.18 %
% of genes from short scaffolds (< 2000 bps) 73.68 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.842 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(25.439 % of family members)
Environment Ontology (ENVO) Unclassified
(63.158 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(74.561 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.12%    β-sheet: 0.00%    Coil/Unstructured: 46.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 114 Family Scaffolds
PF02867Ribonuc_red_lgC 20.18
PF08291Peptidase_M15_3 18.42
PF01510Amidase_2 6.14
PF00268Ribonuc_red_sm 1.75
PF06356DUF1064 1.75
PF13662Toprim_4 0.88
PF01694Rhomboid 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 114 Family Scaffolds
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 20.18
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 1.75
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 0.88


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.84 %
All OrganismsrootAll Organisms13.16 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10009085Not Available5742Open in IMG/M
3300001718|JGI24523J20078_1000922All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium5598Open in IMG/M
3300004461|Ga0066223_1081784Not Available707Open in IMG/M
3300005601|Ga0070722_10528721Not Available532Open in IMG/M
3300006467|Ga0099972_10117673Not Available689Open in IMG/M
3300006484|Ga0070744_10042096Not Available1343Open in IMG/M
3300006734|Ga0098073_1000647Not Available11201Open in IMG/M
3300006752|Ga0098048_1153548Not Available686Open in IMG/M
3300006752|Ga0098048_1183407Not Available620Open in IMG/M
3300006802|Ga0070749_10000039Not Available61505Open in IMG/M
3300006802|Ga0070749_10085830All Organisms → Viruses → environmental samples → uncultured virus1875Open in IMG/M
3300006802|Ga0070749_10135894Not Available1437Open in IMG/M
3300006802|Ga0070749_10371956All Organisms → Viruses792Open in IMG/M
3300006802|Ga0070749_10464464All Organisms → Viruses → environmental samples → uncultured virus692Open in IMG/M
3300006810|Ga0070754_10023951Not Available3509Open in IMG/M
3300006810|Ga0070754_10055635Not Available2071Open in IMG/M
3300006810|Ga0070754_10217123Not Available885Open in IMG/M
3300006810|Ga0070754_10331811Not Available676Open in IMG/M
3300006810|Ga0070754_10339117Not Available667Open in IMG/M
3300006916|Ga0070750_10083535Not Available1496Open in IMG/M
3300006919|Ga0070746_10054995Not Available2066Open in IMG/M
3300006922|Ga0098045_1148659Not Available540Open in IMG/M
3300006924|Ga0098051_1050273Not Available1153Open in IMG/M
3300006924|Ga0098051_1164898Not Available583Open in IMG/M
3300006925|Ga0098050_1155235Not Available576Open in IMG/M
3300006926|Ga0098057_1040959Not Available1144Open in IMG/M
3300007344|Ga0070745_1059955Not Available1546Open in IMG/M
3300007345|Ga0070752_1106557Not Available1194Open in IMG/M
3300007346|Ga0070753_1173628Not Available808Open in IMG/M
3300007538|Ga0099851_1004333Not Available5954Open in IMG/M
3300007538|Ga0099851_1011136Not Available3686Open in IMG/M
3300007539|Ga0099849_1001491Not Available10931Open in IMG/M
3300007541|Ga0099848_1088998Not Available1195Open in IMG/M
3300009001|Ga0102963_1175248Not Available860Open in IMG/M
3300009526|Ga0115004_10590069Not Available658Open in IMG/M
3300009529|Ga0114919_10505710Not Available833Open in IMG/M
3300010299|Ga0129342_1048259Not Available1676Open in IMG/M
3300010392|Ga0118731_114485053Not Available10426Open in IMG/M
3300010430|Ga0118733_104630726All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211732Open in IMG/M
3300010883|Ga0133547_10164279Not Available4792Open in IMG/M
3300011118|Ga0114922_10545408Not Available957Open in IMG/M
3300013098|Ga0164320_10083053Not Available1362Open in IMG/M
3300013098|Ga0164320_10495817Not Available621Open in IMG/M
3300013101|Ga0164313_10998942Not Available681Open in IMG/M
3300013101|Ga0164313_11547720Not Available534Open in IMG/M
3300013101|Ga0164313_11632024Not Available519Open in IMG/M
3300014903|Ga0164321_10530772Not Available597Open in IMG/M
3300017708|Ga0181369_1024342All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.1453Open in IMG/M
3300017714|Ga0181412_1097866Not Available692Open in IMG/M
3300017719|Ga0181390_1001587Not Available9913Open in IMG/M
3300017719|Ga0181390_1006817All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium4190Open in IMG/M
3300017721|Ga0181373_1025225Not Available1105Open in IMG/M
3300017726|Ga0181381_1025616Not Available1334Open in IMG/M
3300017733|Ga0181426_1087724Not Available623Open in IMG/M
3300017739|Ga0181433_1036032Not Available1280Open in IMG/M
3300017740|Ga0181418_1097090Not Available715Open in IMG/M
3300017748|Ga0181393_1117310Not Available677Open in IMG/M
3300017771|Ga0181425_1139203Not Available772Open in IMG/M
3300017772|Ga0181430_1012628Not Available2878Open in IMG/M
3300017776|Ga0181394_1013298Not Available3076Open in IMG/M
3300017950|Ga0181607_10633131Not Available560Open in IMG/M
3300017991|Ga0180434_10024876All Organisms → cellular organisms → Bacteria5768Open in IMG/M
3300018080|Ga0180433_11059602Not Available591Open in IMG/M
3300018424|Ga0181591_10693305Not Available718Open in IMG/M
3300018603|Ga0192881_1001254All Organisms → Viruses → Predicted Viral1923Open in IMG/M
3300019701|Ga0194015_1033333Not Available600Open in IMG/M
3300019751|Ga0194029_1024086Not Available940Open in IMG/M
3300020185|Ga0206131_10333121All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211662Open in IMG/M
3300021185|Ga0206682_10094959Not Available1492Open in IMG/M
3300021347|Ga0213862_10000324Not Available20994Open in IMG/M
3300021373|Ga0213865_10032263All Organisms → Viruses2938Open in IMG/M
3300021373|Ga0213865_10062681Not Available2038Open in IMG/M
3300021373|Ga0213865_10149213Not Available1199Open in IMG/M
3300021425|Ga0213866_10500366Not Available579Open in IMG/M
3300021957|Ga0222717_10058329Not Available2484Open in IMG/M
3300021957|Ga0222717_10079682Not Available2073Open in IMG/M
3300021958|Ga0222718_10206572All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Jiella1069Open in IMG/M
3300022074|Ga0224906_1067417Not Available1108Open in IMG/M
3300022074|Ga0224906_1134086Not Available708Open in IMG/M
3300022198|Ga0196905_1005662Not Available4375Open in IMG/M
3300022198|Ga0196905_1057501Not Available1093Open in IMG/M
3300022220|Ga0224513_10396766Not Available557Open in IMG/M
(restricted) 3300023089|Ga0233408_10093557Not Available621Open in IMG/M
(restricted) 3300023112|Ga0233411_10140820Not Available783Open in IMG/M
(restricted) 3300023271|Ga0233403_10045656Not Available1351Open in IMG/M
3300024228|Ga0228633_1017370Not Available2010Open in IMG/M
(restricted) 3300024340|Ga0255042_10168235All Organisms → Viruses665Open in IMG/M
3300024433|Ga0209986_10022441All Organisms → Viruses4229Open in IMG/M
(restricted) 3300024519|Ga0255046_10311514Not Available736Open in IMG/M
(restricted) 3300024528|Ga0255045_10076286Not Available1177Open in IMG/M
(restricted) 3300024529|Ga0255044_10256234Not Available704Open in IMG/M
3300025048|Ga0207905_1001978Not Available4305Open in IMG/M
3300025151|Ga0209645_1022917Not Available2359Open in IMG/M
3300025543|Ga0208303_1025378Not Available1632Open in IMG/M
3300025608|Ga0209654_1000601Not Available33828Open in IMG/M
3300025646|Ga0208161_1013105Not Available3350Open in IMG/M
3300025646|Ga0208161_1050833Not Available1326Open in IMG/M
3300025646|Ga0208161_1113322Not Available728Open in IMG/M
3300025695|Ga0209653_1043391Not Available1778Open in IMG/M
3300025818|Ga0208542_1153911Not Available624Open in IMG/M
3300025853|Ga0208645_1015140Not Available4478Open in IMG/M
3300025853|Ga0208645_1052941Not Available1921Open in IMG/M
3300025889|Ga0208644_1345599All Organisms → Viruses → environmental samples → uncultured virus570Open in IMG/M
3300027742|Ga0209121_10209656Not Available692Open in IMG/M
3300027757|Ga0208671_10140503Not Available879Open in IMG/M
3300027833|Ga0209092_10262614Not Available947Open in IMG/M
3300027858|Ga0209013_10435188Not Available719Open in IMG/M
3300028128|Ga0228645_1080398Not Available724Open in IMG/M
3300028136|Ga0228608_1200549Not Available520Open in IMG/M
3300028137|Ga0256412_1191514Not Available756Open in IMG/M
3300028282|Ga0256413_1330592Not Available535Open in IMG/M
3300028396|Ga0228643_1032659Not Available1338Open in IMG/M
3300031578|Ga0307376_10479442Not Available807Open in IMG/M
3300032277|Ga0316202_10072014Not Available1604Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous25.44%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater14.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine14.04%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater9.65%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment5.26%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface2.63%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.63%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.63%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.75%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.75%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.75%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.75%
MarineEnvironmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine1.75%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.75%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.88%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.88%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.88%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.88%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.88%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.88%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.88%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.88%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.88%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.88%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.88%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.88%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.88%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.88%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001718Marine viral communities from the Pacific Ocean - LP-48EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005601Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1EnvironmentalOpen in IMG/M
3300006467Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006734Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006926Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaGEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300013098Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cmEnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018603Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782239-ERR1711906)EnvironmentalOpen in IMG/M
3300019701Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_1-2_MGEnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022220Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21EnvironmentalOpen in IMG/M
3300023089 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023271 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_1_MGEnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024340 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300024528 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_23EnvironmentalOpen in IMG/M
3300024529 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21EnvironmentalOpen in IMG/M
3300025048Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025608Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025646Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027742Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027858Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)EnvironmentalOpen in IMG/M
3300028128Seawater microbial communities from Monterey Bay, California, United States - 57DEnvironmentalOpen in IMG/M
3300028136Seawater microbial communities from Monterey Bay, California, United States - 9DEnvironmentalOpen in IMG/M
3300028137Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_74 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028282Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028396Seawater microbial communities from Monterey Bay, California, United States - 55DEnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_10009085113300000117MarineMGKFLVKIGKKLMAFNQHLKGEWNSLLYKLMFKKEK*
JGI24523J20078_100092233300001718MarineMGKLLVKLGEKLIAFNKFLKGKWNSLLYKLMFKEEKKNGKK*
Ga0066223_108178423300004461MarineMGKLLVKLGEKLIAFNKFLKGKWNSLLYRLMFKEEKKNEKK*
Ga0070722_1052872113300005601Marine SedimentMGKLLVKIGKKLMAFNQHLKGEWNSLLYKLMFKKEK*
Ga0099972_1011767313300006467MarineMGKFLVKIGKILIEFNKYLKSKWNSLMYALMFKGY
Ga0070744_1004209653300006484EstuarineMGKFLVKIGKKLIEFNKYLKSKWNSLMYALMFKSYN
Ga0098073_1000647163300006734MarineMGKFFIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK*
Ga0098048_115354833300006752MarineMGKFLIKIGKKLVAFNEYLKGEWNSLLYKLMFKKEK*
Ga0098048_118340723300006752MarineMGKFLIKIGNKLVEFNKHLKGEWNSLLYKLMFKKEK*
Ga0070749_10000039393300006802AqueousMGKFFIKLGKKIIEFNEFLKSKWNSLMYRLMFKKEQK*
Ga0070749_1008583033300006802AqueousMGKFLIKIGNKLVAFNEYLKGRWNSLLYRLMFKK*
Ga0070749_1013589443300006802AqueousMGKFLIKIGNKLVAFNQHLKGEWNSLLYKLMFKKEQK*
Ga0070749_1037195623300006802AqueousMGKLLVKLGQKLIAFNLLLKIKWNNLIDKLKFKIK*
Ga0070749_1046446433300006802AqueousMGKFFIKIGKKIVAFNEYLKGRWNSLLYKLMFKKEK*
Ga0070754_1002395133300006810AqueousMGKFLIKIGNNLVAFNEYLKGKWNSLMYKLMFKKEK*
Ga0070754_1005563533300006810AqueousMGKFFIKIGKKIVSFNEYLKGRWNSLLYKLMFKKEK*
Ga0070754_1021712323300006810AqueousMGKFFIKIGNKLVAFNEYLKGKWNSLMYKLMFKKEK*
Ga0070754_1033181133300006810AqueousMGKFLIKIGNKLVAFNQHLKGEWNSLLYKLMFKKEK*
Ga0070754_1033911713300006810AqueousRFKYKIIMGKFLIKIGKKLVAFNEYLKGEWNSLLYKLMFKKEK*
Ga0070750_1008353523300006916AqueousMGKFLIKIGKKLVEFNEYLKGKWNSLLYKLMFKKEK*
Ga0070746_1005499573300006919AqueousMGKFLIKIGNKLVAFNEYLKGEWNSLLYKLMFKKEQK*
Ga0098045_114865933300006922MarineMGKFLIKIGNKLVEFNKHLKGEWNSLLYKLMFKKEQ
Ga0098051_105027323300006924MarineMGKFFIKIGNKLVAFNKHLKGEWNSLLYKLMFKKEK*
Ga0098051_116489813300006924MarineKYKITMGKFLIKIGNKLVEFNKHLKGEWNSLLYKLMFKKEK*
Ga0098050_115523523300006925MarineMGKFLIKIGKKLVEFNKHLKGEWNSLLYKLMFKKEQK*
Ga0098057_104095923300006926MarineMGKFLIKIGNKLVEFNKHLKGEWNSLLYKLMFKKEQK*
Ga0070745_105995513300007344AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEQK*
Ga0070752_110655743300007345AqueousTINMGKFLIKIGNNLVSFNEYLKGKWNSLLYKLMFKKEK*
Ga0070753_117362813300007346AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK*
Ga0099851_1004333113300007538AqueousMGKFLIKIGNKLVALNQHLKGEWNSLLYKLMFKKEK*
Ga0099851_101113693300007538AqueousMGKFLIKIGKKLVAFNEYLKGKWNSLLYKLMFKKEK*
Ga0099849_100149183300007539AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLLYRLMFKKEK*
Ga0099848_108899843300007541AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLLYRLMFKKEQK*
Ga0102963_117524823300009001Pond WaterMGKFLIKIGNKLVAFNEHLKGEWNSLLYKLMFKKEK*
Ga0115004_1059006913300009526MarineMGKFLVKIGKKLIEFNKFLKNKWNSLMYLLMFKNYNE
Ga0114919_1050571023300009529Deep SubsurfaceMGKLLVKIGKKLMAFNQYLKGEWNSLLYKLMFKKEK*
Ga0129342_104825953300010299Freshwater To Marine Saline GradientMGKFLIKIGNKLVAFNEYLKGKWNSLMYKLMFKKEK*
Ga0118731_11448505383300010392MarineMGKFLVKIGQKLIEFNKFLKNKWNSLMYLLMFKNYNEE
Ga0118733_10463072643300010430Marine SedimentMGKFLVKIGQKLIEFNKFLKNKWNSLMYLLMFKNYNE
Ga0133547_1016427933300010883MarineMGKLLVKLGEKLIAFNKFLKGKWNSLLYRLMFKEEKKNGKK*
Ga0114922_1054540823300011118Deep SubsurfaceMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMYKKKQK*
Ga0164320_1008305323300013098Marine SedimentVGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK*
Ga0164320_1049581723300013098Marine SedimentMGKFFIKIGKKLVAFNEYLKGKWNSLLYKLMFKKEK*
Ga0164313_1099894233300013101Marine SedimentMGKFLVKIGKKLIAFNQHLKGEWNSLLYKLMFKKEK*
Ga0164313_1154772023300013101Marine SedimentMGKFLIKIGNKLVAFNEYLKGEWNSLLYKLMFKKEK*
Ga0164313_1163202423300013101Marine SedimentMGKLLVKIGKKLIAFNQHLKGEWNSLLYKLMFKKEK*
Ga0164321_1053077213300014903Marine SedimentIIMGKFLIKIGNKLVSFNIYLKGEWNLLLYKLMFKKEK*
Ga0181369_102434223300017708MarineMGKFLIKIGKKLVAFNEYLKGEWNSLMYKLMFKKEK
Ga0181412_109786633300017714SeawaterMGKFLIKIGNKLVAFNEYLKSEWNSLMYKLMFKKEK
Ga0181390_100158723300017719SeawaterMGKLLVKLGNKIIKFNEFLKSKWNSLMYKLMFKKEQK
Ga0181390_100681723300017719SeawaterMGKFLIKIGNKLVAFNEYLKGEWNSLLYKLMFKKQK
Ga0181373_102522523300017721MarineMGKFLIKIGKKLVAFNEYLKGEWNSLLYKLMFKKEK
Ga0181381_102561643300017726SeawaterMGKFLVKIGKKLIAFNQYLKGEWNSLLYKLMFKKEK
Ga0181426_108772423300017733SeawaterMGKFLVKIGKKLIAFNQHLKGEWNSLLYKLMFKKEKWRKIK
Ga0181433_103603223300017739SeawaterMGKFLVKIGKKLIAFNKHLKGEWNSLLYKLMFKQKGTK
Ga0181418_109709023300017740SeawaterMGKFLIKIGKKLVEFNEYLKSKWNSLLYKLMFKKEK
Ga0181393_111731033300017748SeawaterGKFLVKIGKKLIAFNQHLKGEWNSLLYKLMFKKEKL
Ga0181425_113920323300017771SeawaterMGKFLIKIGNKLVAFNEHLKGEWNSLLYKLMFKKEK
Ga0181430_101262853300017772SeawaterMGKFLIKIGNKLVAFNEYLKGEWNSLLYRLMFKKEQK
Ga0181394_101329863300017776SeawaterMGKFLIKIGKRLVAFNEYLKGKWNSLIHKLMFKKEK
Ga0181607_1063313123300017950Salt MarshMGKFLIKIGNKLVAFNQHLKGEWNSLLYKLMFKKEK
Ga0180434_1002487613300017991Hypersaline Lake SedimentMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEQK
Ga0180433_1105960223300018080Hypersaline Lake SedimentMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK
Ga0181591_1069330523300018424Salt MarshKLLVKLGNKIIEFNEFLKSKWNSLMYRLMFKKEQK
Ga0192881_100125463300018603MarineMGKFFIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEQK
Ga0194015_103333323300019701SedimentMGKFLVKIGKKLMAFNQHLKGEWNSLLYKLMFKKEK
Ga0194029_102408623300019751FreshwaterMGKFLIKIGKKLVEFNEYLKGKWNSLLYKLMFKKEK
Ga0206131_1033312143300020185SeawaterMGKFLVKIGKKLIEFNKYLKSKWNSLMYFLMFKGYNEECV
Ga0206682_1009495923300021185SeawaterMGKFFIKIGNKLVAFNEYLKGEWNSLLYKLMFKKEK
Ga0213862_10000324213300021347SeawaterMGKFLIKIGKKIVAFNEYLKGEWNSLMYKLMFKKEK
Ga0213865_1003226323300021373SeawaterMGKFFIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK
Ga0213865_1006268143300021373SeawaterMGKLLVKIGKKLIAFNQYLKGEWNSLLYKLMFKKEK
Ga0213865_1014921323300021373SeawaterMGKFLVKIGKKLIAFNQYLKGEWNSLLYKLMFKQKGTK
Ga0213866_1050036613300021425SeawaterMGKLLVKIGKKLMAFNQHLKGEWNSLLYKLMFKKEK
Ga0222717_1005832923300021957Estuarine WaterMGKFLIKIGNKLVEFNKHLKGEWNSLLYKLMFKKEQK
Ga0222717_1007968243300021957Estuarine WaterMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKDN
Ga0222718_1020657233300021958Estuarine WaterMGKLLVKLGQKLIAFNMFLKNKWNNLIDKLKFKIK
Ga0224906_106741733300022074SeawaterMGKFLVKIGKKLIAFNQHLKGEWNSLLYKLMFKKEK
Ga0224906_113408633300022074SeawaterMGKFLVKIGKKLIAFNQHLKGEWNSLLYKLMFKQKGTK
Ga0196905_100566253300022198AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLMYKLMFKKEK
Ga0196905_105750133300022198AqueousMGKFLIKIGKKLVAFNEYLKGKWNSLLYKLMFKKEK
Ga0224513_1039676623300022220SedimentMGKFLIKIGNKLVAFNEHLKGKWNSLLYKLMFKKEK
(restricted) Ga0233408_1009355723300023089SeawaterMGKFFIKIGNKLVAFNEYLKSEWNSLLYKLMFKKEK
(restricted) Ga0233411_1014082023300023112SeawaterMGKFLIKIGKKLVAFNIYLKGEWNSLLYKLMFKKEK
(restricted) Ga0233403_1004565623300023271SeawaterMGKFLIKIGNKLVEFNKHLKGEWNSLLYKLMFKKEK
Ga0228633_101737023300024228SeawaterMGKFLIKIGNKLVAFNEYLKGEWNSLLYKLMFKKEK
(restricted) Ga0255042_1016823523300024340SeawaterMGKLLVKLGQKLIAFNMVLKNKWNNLIDKLKFKIK
Ga0209986_1002244183300024433Deep SubsurfaceMGKFLIKIGKKLVAFNEYLKGKWNSLMYKLMFKKEK
(restricted) Ga0255046_1031151423300024519SeawaterMGKFIKKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK
(restricted) Ga0255045_1007628643300024528SeawaterMGKFFIKIGNKLVAFNEYLKGEWNSLLYKLMFKKEKQ
(restricted) Ga0255044_1025623413300024529SeawaterIINMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEK
Ga0207905_100197833300025048MarineMGKLLVKLGEKLIAFNKFLKGKWNSLLYKLMFKEEKKNGKK
Ga0209645_102291733300025151MarineMGKFFIKIGKKLVAFNEYLKSKWNSLMYKLMFKKEK
Ga0208303_102537833300025543AqueousMGKFLIKIGNKLVALNQHLKGEWNSLLYKLMFKKEK
Ga0209654_1000601733300025608MarineMGKFLIKIGNKLVSFNIYLKGEWNSLLYKLMFKKEK
Ga0208161_101310533300025646AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLLYRLMFKKEK
Ga0208161_105083343300025646AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLLYRLMFKKEQK
Ga0208161_111332233300025646AqueousMGKFFIKIGNKLVAFNEYLKGKWNSLMYKLMFKKEK
Ga0209653_104339143300025695MarineMGKFFIKIGNKIINCKEHFKGKWNSLMYKLMFKKEK
Ga0208542_115391133300025818AqueousMGKLLVKLGQKLIAFNLLLKIKWNNLIDKLKFKIK
Ga0208645_101514013300025853AqueousMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEQ
Ga0208645_105294123300025853AqueousMGKFFIKIGKKIVSFNEYLKGRWNSLLYKLMFKKEK
Ga0208644_134559923300025889AqueousMGKFFIKIGKKIVAFNEYLKGRWNSLLYKLMFKKEK
Ga0209121_1020965633300027742MarineMGKFLIKIGNKLVAFNEYLKGEWNSLLYKLMFKKEQK
Ga0208671_1014050333300027757EstuarineKSKLQKIIMGKFFIKIGNKLVAFNEYLKGKWNSLLYKLMFKK
Ga0209092_1026261413300027833MarineMGKFLVKIGKKLIEFNKYLKSKWNSLMYTLMFKGYNE
Ga0209013_1043518823300027858MarineMGKFLVKIGKKLIAFNQHLKGEWNSLLYKLMFKKEKL
Ga0228645_108039813300028128SeawaterTNMGKFFIKIGNKLVAFNEYLKGKWNSLLYKLMFKKEQK
Ga0228608_120054913300028136SeawaterKKRFEYKIIMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKDN
Ga0256412_119151423300028137SeawaterMGKFLIKIGNKLVAFNEYLKGKWNSLLYKLMFKKYK
Ga0256413_133059223300028282SeawaterMGKFFIKIGNKLVAFNEYLKGEWNSLLYKLMFKKDN
Ga0228643_103265933300028396SeawaterMGKFLIKIGNKLVAFNEYLKGKWNTLLYKLMFKKDN
Ga0307376_1047944213300031578SoilIFNMGKLLVKLGQKLIAFNMFLKNKWNNLIDKLKFKIK
Ga0316202_1007201423300032277Microbial MatMGKFLIKIGNKLVEFNKHLKSEWNSLLYKLMFKKEK


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