Metagenome / Metatranscriptome Family F081338

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081338
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	48 residues
Representative Sequence	MKSKEEIVLMWIIVGLVVIPLAILYPPIILIGIFMYAAINLYKHYTNG
Number of Associated Samples	94
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	53.91 %
% of genes near scaffold ends (potentially truncated)	17.54 %
% of genes from short scaffolds (< 2000 bps)	77.19 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.386 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (26.316 % of family members)
Environment Ontology (ENVO)	Unclassified (78.947 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.614 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.58% β-sheet: 0.00% Coil/Unstructured: 43.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00154	RecA	6.14
PF14743	DNA_ligase_OB_2	2.63
PF13481	AAA_25	1.75
PF00034	Cytochrom_C	1.75
PF01050	MannoseP_isomer	1.75
PF06067	DUF932	1.75
PF02771	Acyl-CoA_dh_N	0.88
PF10985	DUF2805	0.88
PF10544	T5orf172	0.88
PF13085	Fer2_3	0.88
PF01145	Band_7	0.88
PF10504	DUF2452	0.88
PF08281	Sigma70_r4_2	0.88
PF13183	Fer4_8	0.88
PF13350	Y_phosphatase3	0.88
PF00722	Glyco_hydro_16	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	6.14
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.88
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.26 %
Unclassified	root	N/A	44.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.39 %
Unclassified	root	N/A	44.74 %
Viruses	superkingdom	All Organisms → Viruses	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.39 %
Unclassified	root	N/A	44.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	33.33 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	11.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	32.46 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	11.40 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	32.46 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	11.40 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	30.70 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	11.40 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	30.70 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	11.40 %
unclassified Rhodobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	20.18 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	11.40 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	10.53 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	20.18 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	11.40 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	10.53 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	20.18 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	11.40 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	10.53 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000116\|DelMOSpr2010_c10195714	Not Available	652	Open in IMG/M
3300001460\|JGI24003J15210_10071938	Not Available	1075	Open in IMG/M
3300001472\|JGI24004J15324_10053410	Not Available	1193	Open in IMG/M
3300001472\|JGI24004J15324_10099346	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	750	Open in IMG/M
3300001589\|JGI24005J15628_10057542	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1466	Open in IMG/M
3300004097\|Ga0055584_100261993	Not Available	1766	Open in IMG/M
3300004461\|Ga0066223_1207092	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1468	Open in IMG/M
3300005837\|Ga0078893_11307030	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1313	Open in IMG/M
3300006484\|Ga0070744_10028705	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1647	Open in IMG/M
3300006484\|Ga0070744_10178517	Not Available	606	Open in IMG/M
3300006621\|Ga0101441_131372	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2559	Open in IMG/M
3300006735\|Ga0098038_1024174	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300006737\|Ga0098037_1008217	All Organisms → Viruses → Predicted Viral	4129	Open in IMG/M
3300006737\|Ga0098037_1015918	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2848	Open in IMG/M
3300006749\|Ga0098042_1117376	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	666	Open in IMG/M
3300006752\|Ga0098048_1012151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3011	Open in IMG/M
3300006924\|Ga0098051_1080870	Not Available	879	Open in IMG/M
3300007554\|Ga0102820_1096225	Not Available	711	Open in IMG/M
3300007555\|Ga0102817_1035530	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1095	Open in IMG/M
3300007640\|Ga0070751_1016156	All Organisms → cellular organisms → Bacteria	3663	Open in IMG/M
3300009024\|Ga0102811_1172386	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	809	Open in IMG/M
3300009059\|Ga0102830_1106072	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	832	Open in IMG/M
3300009086\|Ga0102812_10345974	Not Available	808	Open in IMG/M
3300009428\|Ga0114915_1012535	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3191	Open in IMG/M
3300009507\|Ga0115572_10064751	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2269	Open in IMG/M
3300009550\|Ga0115013_11235805	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	546	Open in IMG/M
3300010148\|Ga0098043_1046993	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1328	Open in IMG/M
3300012920\|Ga0160423_10000466	All Organisms → cellular organisms → Bacteria	33052	Open in IMG/M
3300012920\|Ga0160423_11006910	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	558	Open in IMG/M
3300012920\|Ga0160423_11098045	Not Available	532	Open in IMG/M
3300012936\|Ga0163109_10016631	All Organisms → cellular organisms → Bacteria → FCB group	5451	Open in IMG/M
3300012936\|Ga0163109_10206978	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300012936\|Ga0163109_10681756	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	752	Open in IMG/M
3300017708\|Ga0181369_1032079	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1233	Open in IMG/M
3300017708\|Ga0181369_1065081	Not Available	795	Open in IMG/M
3300017709\|Ga0181387_1057592	Not Available	777	Open in IMG/M
3300017717\|Ga0181404_1016531	Not Available	1919	Open in IMG/M
3300017719\|Ga0181390_1132306	Not Available	642	Open in IMG/M
3300017720\|Ga0181383_1046469	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1165	Open in IMG/M
3300017721\|Ga0181373_1052889	Not Available	736	Open in IMG/M
3300017724\|Ga0181388_1106309	Not Available	668	Open in IMG/M
3300017727\|Ga0181401_1011885	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2728	Open in IMG/M
3300017733\|Ga0181426_1116572	Not Available	537	Open in IMG/M
3300017739\|Ga0181433_1001495	All Organisms → cellular organisms → Bacteria	7689	Open in IMG/M
3300017739\|Ga0181433_1045869	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1118	Open in IMG/M
3300017740\|Ga0181418_1055288	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	983	Open in IMG/M
3300017742\|Ga0181399_1087431	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	780	Open in IMG/M
3300017744\|Ga0181397_1019135	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2030	Open in IMG/M
3300017745\|Ga0181427_1039507	Not Available	1172	Open in IMG/M
3300017748\|Ga0181393_1077540	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	875	Open in IMG/M
3300017751\|Ga0187219_1147881	Not Available	679	Open in IMG/M
3300017751\|Ga0187219_1207361	Not Available	539	Open in IMG/M
3300017752\|Ga0181400_1013245	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2816	Open in IMG/M
3300017757\|Ga0181420_1038498	Not Available	1555	Open in IMG/M
3300017767\|Ga0181406_1077270	Not Available	1016	Open in IMG/M
3300017767\|Ga0181406_1134532	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	743	Open in IMG/M
3300017768\|Ga0187220_1115471	Not Available	811	Open in IMG/M
3300017769\|Ga0187221_1097460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	901	Open in IMG/M
3300017769\|Ga0187221_1154295	Not Available	678	Open in IMG/M
3300017770\|Ga0187217_1166086	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	736	Open in IMG/M
3300017772\|Ga0181430_1175822	Not Available	616	Open in IMG/M
3300017773\|Ga0181386_1105473	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	877	Open in IMG/M
3300017779\|Ga0181395_1130831	Not Available	796	Open in IMG/M
3300017782\|Ga0181380_1270335	Not Available	561	Open in IMG/M
3300017783\|Ga0181379_1195065	Not Available	710	Open in IMG/M
3300020282\|Ga0211667_1001092	All Organisms → cellular organisms → Bacteria	8067	Open in IMG/M
3300020377\|Ga0211647_10049511	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300020379\|Ga0211652_10269829	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	523	Open in IMG/M
3300020392\|Ga0211666_10000140	Not Available	56570	Open in IMG/M
3300020403\|Ga0211532_10090266	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1330	Open in IMG/M
3300020403\|Ga0211532_10130762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	1045	Open in IMG/M
3300020404\|Ga0211659_10475238	Not Available	536	Open in IMG/M
3300020409\|Ga0211472_10027004	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300020437\|Ga0211539_10154446	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	936	Open in IMG/M
3300020437\|Ga0211539_10471947	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	522	Open in IMG/M
3300020442\|Ga0211559_10079309	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1593	Open in IMG/M
3300020446\|Ga0211574_10011873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4214	Open in IMG/M
3300020446\|Ga0211574_10016630	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3492	Open in IMG/M
3300020450\|Ga0211641_10155219	Not Available	1154	Open in IMG/M
3300020452\|Ga0211545_10521342	Not Available	535	Open in IMG/M
3300020463\|Ga0211676_10410255	Not Available	738	Open in IMG/M
3300020469\|Ga0211577_10003073	All Organisms → cellular organisms → Bacteria	15226	Open in IMG/M
3300020469\|Ga0211577_10023182	All Organisms → cellular organisms → Bacteria	4818	Open in IMG/M
3300021169\|Ga0206687_1432688	Not Available	1082	Open in IMG/M
3300021335\|Ga0213867_1091985	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1096	Open in IMG/M
3300021350\|Ga0206692_1516067	Not Available	1330	Open in IMG/M
3300022074\|Ga0224906_1020823	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2353	Open in IMG/M
(restricted) 3300022920\|Ga0233426_10119241	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1146	Open in IMG/M
(restricted) 3300023085\|Ga0233406_10101548	Not Available	502	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10113194	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1497	Open in IMG/M
3300024346\|Ga0244775_10338661	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1243	Open in IMG/M
3300025101\|Ga0208159_1038509	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1044	Open in IMG/M
3300025102\|Ga0208666_1073846	Not Available	892	Open in IMG/M
3300025103\|Ga0208013_1126275	Not Available	627	Open in IMG/M
3300025120\|Ga0209535_1036577	Not Available	2247	Open in IMG/M
3300025120\|Ga0209535_1065610	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1454	Open in IMG/M
3300025120\|Ga0209535_1156260	Not Available	710	Open in IMG/M
3300025127\|Ga0209348_1066043	Not Available	1182	Open in IMG/M
3300025137\|Ga0209336_10075204	Not Available	994	Open in IMG/M
3300025137\|Ga0209336_10085306	Not Available	914	Open in IMG/M
3300025137\|Ga0209336_10105084	Not Available	792	Open in IMG/M
3300025151\|Ga0209645_1023359	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2333	Open in IMG/M
3300025276\|Ga0208814_1103313	Not Available	712	Open in IMG/M
3300025886\|Ga0209632_10178077	Not Available	1144	Open in IMG/M
3300026504\|Ga0247587_1067796	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	879	Open in IMG/M
3300027077\|Ga0208941_1002549	Not Available	2985	Open in IMG/M
3300027081\|Ga0208954_1041832	Not Available	592	Open in IMG/M
3300027859\|Ga0209503_10315010	Not Available	764	Open in IMG/M
3300028109\|Ga0247582_1199598	Not Available	506	Open in IMG/M
3300028197\|Ga0257110_1154898	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	918	Open in IMG/M
3300029293\|Ga0135211_1043524	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	567	Open in IMG/M
3300029306\|Ga0135212_1031166	Not Available	567	Open in IMG/M
3300031569\|Ga0307489_10327430	Not Available	999	Open in IMG/M
3300034418\|Ga0348337_011782	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4969	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	33.33%
Strait	Environmental → Aquatic → Marine → Strait	26.32%
Unclassified	Environmental → Aquatic → Marine → Unclassified	18.42%
Coastal	Environmental → Aquatic → Marine → Coastal	7.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.14%
Inlet	Environmental → Aquatic → Marine → Inlet	2.63%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.63%
Harbor	Environmental → Aquatic → Marine → Harbor	1.75%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	28.07%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	26.32%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	18.42%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.89%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	5.26%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.39%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Marine → Harbor → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	26.32%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	23.68%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	15.79%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	5.26%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.39%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	2.63%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.63%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.63%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.75%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.75%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.75%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	1.75%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.75%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.75%
Marine Harbor	Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor	1.75%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.88%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.88%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.88%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.88%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006621	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time point	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental	Open in IMG/M
3300007554	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental	Open in IMG/M
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental	Open in IMG/M
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental	Open in IMG/M
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental	Open in IMG/M
3300017721	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG	Environmental	Open in IMG/M
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017733	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017745	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017751	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)	Environmental	Open in IMG/M
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017768	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)	Environmental	Open in IMG/M
3300017769	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)	Environmental	Open in IMG/M
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental	Open in IMG/M
3300020282	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)	Environmental	Open in IMG/M
3300020377	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)	Environmental	Open in IMG/M
3300020379	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)	Environmental	Open in IMG/M
3300020392	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020409	Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)	Environmental	Open in IMG/M
3300020437	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020446	Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)	Environmental	Open in IMG/M
3300020450	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)	Environmental	Open in IMG/M
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300021169	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental	Open in IMG/M
3300021350	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300022920 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG	Environmental	Open in IMG/M
3300023085 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_5_MG	Environmental	Open in IMG/M
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025101	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025127	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025276	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)	Environmental	Open in IMG/M
3300025886	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)	Environmental	Open in IMG/M
3300026504	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 46R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027077	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)	Environmental	Open in IMG/M
3300027081	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35 (SPAdes)	Environmental	Open in IMG/M
3300027859	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028109	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental	Open in IMG/M
3300029293	Marine harbor viral communities from the Indian Ocean - SCH2	Environmental	Open in IMG/M
3300029306	Marine harbor viral communities from the Indian Ocean - SCH3	Environmental	Open in IMG/M
3300031569	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_101957142	3300000116	Marine	MRSKEEIALLWIVVGLVVXPLXXLXPPIIVFGIFMYAAVNLYKHYNI*
JGI24003J15210_100719382	3300001460	Marine	MRNKEELALMWVIVGAASIVTIIIYPPIIVAGIFIYAAINLYKHYSNG*
JGI24004J15324_100534103	3300001472	Marine	MKSKEEIMLMWIIVGLVMIPLCIVQPFIIVAGIFIYATINLYKHYSNG*
JGI24004J15324_100993463	3300001472	Marine	MRSKEEIILMWIIVGLVVIPLAILFPPIILVGIFMYAAVNLYKHYSNG*
JGI24005J15628_100575422	3300001589	Marine	MRNKEELALMWIIVGAASIVTIIIYPPILLVGIFMYAAINLYKHYNI*
Ga0055584_1002619931	3300004097	Pelagic Marine	MKNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYASVRLYKHYTTQ*
Ga0066223_12070925	3300004461	Marine	MRSKEEIILMWIIVGLVVIPLAILFPPILLVGIFMYAAINLYKHYNI*
Ga0078893_113070304	3300005837	Marine Surface Water	MKSKEEIALLWIVVSLVAIPICILYPPVVLIGIFMYAAVSLYKHYANG*
Ga0070744_100287052	3300006484	Estuarine	MKNKEELALMWIIVGATGIVTTILYPPILLIGIFMYAAISLYKHYKI*
Ga0070744_101785172	3300006484	Estuarine	MRSKEEIVLMWIIVGLVVIPLAILYPPVILIGIFMYAAINLYKHYSK*
Ga0101441_1313724	3300006621	Marine Surface Water	MKSKEEIALLWIVVSLVAIPICILYPPVVLIGIFMYAAVSLYKHYANGNN
Ga0098038_10241746	3300006735	Marine	MKNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYATVRLYKHYTTQ*
Ga0098037_10082173	3300006737	Marine	MKNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYATVRLYKHYTT*
Ga0098037_10159183	3300006737	Marine	MKSKEEIALLWIVVGLVVVPLAILYPPIVLVGIFMYAAISLYKHYANG*
Ga0098042_11173762	3300006749	Marine	MKSKEEIMLLWVVVSLIAIPLVIVQPLILVFGIFMYAAISLYKHYANGYN
Ga0098048_10121513	3300006752	Marine	MKSKEEIVLMWIIVGLVVIPLAILYPPIILIGIFMYAAIKLYKHYKI*
Ga0098051_10808703	3300006924	Marine	MKNKEEIALMWVIVGLVVIPLCIMYPPIVLVGLFLYATVRLYKHYTTQ*
Ga0102820_10962251	3300007554	Estuarine	QVMKSKEEIILMWVIVGLVVIPLAILYPPVILIGIFMYAAIKLYKHYNI*
Ga0102817_10355303	3300007555	Estuarine	MRSKEEIVLMWIIVGLVVIPLAILYPPVILIGIFMYAAIKLYKHYNI*
Ga0070751_10161569	3300007640	Aqueous	MKSKEEIALMWIVVGLIVIPLVILYPPVILIGIFMYAAISLYKHYANG*
Ga0102811_11723863	3300009024	Estuarine	MKSKEEIILMWVIVGLVVIPLAILYPPVILIGIFMYAAIK
Ga0102830_11060723	3300009059	Estuarine	MKSKEEIILMWVIVGLVVIPLAILYPPVILIGIFMYAAIKLYKHYNI*
Ga0102812_103459741	3300009086	Estuarine	KEEIVLMWIIVGLVVIPLAILYPPVILIGIFMYAAIKLYKHYNI*
Ga0114915_10125354	3300009428	Deep Ocean	MVMKNKEELALMWIIVGTASISTIILYPPALLIGIFMYAIINLYKHYNI*
Ga0115572_100647514	3300009507	Pelagic Marine	MRSKEEIILMWVIVGVVLLPLCFLFPPLVLIGIFMYAAINLYKHYSK*
Ga0115013_112358053	3300009550	Marine	MKSKEEIMLLWIVVGLVAIPICILYPPVVLIGIFMYAAVSLY
Ga0098043_10469932	3300010148	Marine	MKSKEEIMLLWVVVSLIAIPLVIVQPLILVFGIFMYAAISLYKHYANG*
Ga0160423_1000046610	3300012920	Surface Seawater	MKSKEELALMWIIVGLVVIPLCIMYPPIVLMSLFLYATVKLYNHYNVN*
Ga0160423_110069102	3300012920	Surface Seawater	MKSKEEIMLLWIVVGLVAIPICILYPPVVLIGIFMYAAINLYKHYSNG*
Ga0160423_110980452	3300012920	Surface Seawater	MKSKEEIALLWIVVGLIAIPICILYPPVVIFGIFMYAAINLYKHYSNG*
Ga0163109_1001663111	3300012936	Surface Seawater	MRNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYATVKLYKHYNTQ*
Ga0163109_102069783	3300012936	Surface Seawater	MKSKEELALMWIIVGIVVVPLLILYPPILLFGLFLYAAIKLYKHYNYGK*
Ga0163109_106817561	3300012936	Surface Seawater	MKSKEEIALLWIVVGLVAIPICILYPPVVLIGIFMYAAINLYKHYSNG*
Ga0181369_10320795	3300017708	Marine	MKSKEEIALLWIVVGLVVVPLAILYPPIILVGIFMYAAISLYKHYANGXYN
Ga0181369_10650815	3300017708	Marine	MKSKEEIVLMWIIVGLVVIPLAILYPPIILIGIFMYAAINLYKHYTNG
Ga0181387_10575922	3300017709	Seawater	MKSKEEIALMWIIVGLVVVPLAILYPPVILIGIFMYATISLYKHYNI
Ga0181404_10165316	3300017717	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPVVLFGIFMYAAISLYKHYANG
Ga0181390_11323061	3300017719	Seawater	MKSKEEIALLWIVVGLVVIPLAILYPPVILVGIFIYAAINLYKHYSNG
Ga0181383_10464692	3300017720	Seawater	MKSKEEIALLWIVVGLVVLPLAILYPPVILVGIFIYAAINLYKHYSNG
Ga0181373_10528894	3300017721	Marine	MKSKEEIMLLWIVVGLVVVPLAILYPPIVLVGIFMYAAISLYKHYANG
Ga0181388_11063093	3300017724	Seawater	MKSKEEIALLWIVVGLIVLPLVILYPPIILIGIFMYAAISLYKHYANG
Ga0181401_10118855	3300017727	Seawater	MKSKEEIALLWIVVGLIVLPLIILYPPMVLIGIFMYAVINLYKHYSNG
Ga0181426_11165723	3300017733	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPVVLFGIFMYAAISLYKHYANGXNN
Ga0181433_100149513	3300017739	Seawater	MKSKEEIMLLWIVVGLVVVPLVILYPPILAFGIFMYATISLYKHYSNG
Ga0181433_10458693	3300017739	Seawater	MKTKEEIALLWIVLGLIVIPLVILYPLILVFGIFMYAAINLYKHYSNG
Ga0181418_10552883	3300017740	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPMVLIGIFIYAAINLYKHYSK
Ga0181399_10874313	3300017742	Seawater	MKSKEEIALMWIIVGLVVVPLAILYPPVILIGIFMYAAIKLYKHYSI
Ga0181397_10191353	3300017744	Seawater	MKSKEEIILMWVIVGLVVIPLAILYPPVILIGIFMYAAINLYKHYSK
Ga0181427_10395071	3300017745	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPLILVFGIFMYAAISLYKHYANG
Ga0181393_10775403	3300017748	Seawater	MKSKEEITLLWIVVGLIVLPLVILYPPIILIGIFMYAAISLYKHYANG
Ga0187219_11478814	3300017751	Seawater	MRSKEEIIIMWIIVGMVLLPLVFLYPPVILIGIFMYAAIKLYKHYNI
Ga0187219_12073612	3300017751	Seawater	MKSKEEIMLLWVVVGLVVLPLIILYPPMVLIGIFMYAVINLYKHYSNG
Ga0181400_10132451	3300017752	Seawater	GQKQVMKSKEEIVLMWVIVGMVMLPLVFLYPPIILIGIFMYAAIKLYKHYSI
Ga0181420_10384981	3300017757	Seawater	MKSKEEIMLLWIVVGLVVLPLIILYPPMVLIGIFIYAAINLYKHYSK
Ga0181406_10772702	3300017767	Seawater	MRSKEEIVLMWVIVGLVVIPLAILYPPVILIGIFMYAAINLYKHYSK
Ga0181406_11345323	3300017767	Seawater	MKSKEEIALLWIVVGLIVLPLVILYPPIILIGIFMYAAISLYKH
Ga0187220_11154712	3300017768	Seawater	MKSKEEIALLWIVVGLVVLPLAILYPPVILVGIFIYAAINLYKHYSK
Ga0187221_10974603	3300017769	Seawater	MKSKEEIILMWVIVGLVVIPLTILYPPVILIGIFMYAAINLYKHYSK
Ga0187221_11542951	3300017769	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPIILIGIFMYAAISLYKHYANG
Ga0187217_11660861	3300017770	Seawater	MKSKEEITLLWIVVGLIVLPLVILYPPIILIGIFMYAAISLYKH
Ga0181430_11758222	3300017772	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPMVLIGIFIYAAINLYKHYSNG
Ga0181386_11054733	3300017773	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPMVLIGIFIYAAISLYKHYSK
Ga0181395_11308314	3300017779	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPMVLIGIFMYAVINLYKHYNI
Ga0181380_12703353	3300017782	Seawater	MKSKEEIALMWIIVGLVVVPLAILYPPVILIGIFMYAAISLYKHYANG
Ga0181379_11950651	3300017783	Seawater	DMKSKEEIALLWIVVGLVVLPLIILYPPMVLIGIFMYAVINLYKHYNI
Ga0211667_10010926	3300020282	Marine	MKNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYATVKLYKHYTTQ
Ga0211647_100495114	3300020377	Marine	MKSKEEIALLWIVVSLIAIPLCIVQPLILVFGIFMYAAISLYKHYANG
Ga0211652_102698291	3300020379	Marine	MKSKEEIALLWIVVSLIAIPLCIVQPLILVFGIFMYATISLYKHYF
Ga0211666_1000014089	3300020392	Marine	MKTKEEIAILWIIVGLVVIPLCILYPPIIMFGIFMYAIISLYKHYSNG
Ga0211532_100902663	3300020403	Marine	MKSKEEIALLWIVVGLVAIPICILYPPVVLIGIFMYAAVSLYKHYANGXYN
Ga0211532_101307622	3300020403	Marine	MKSKEELALMWIIVGLVVIPLCIMYPPIVLMGLFLYATVKLYNHYYVK
Ga0211659_104752381	3300020404	Marine	VVGLVAIPICILYPPVVLVGIFMYAAISLYKHYANGXNN
Ga0211472_100270044	3300020409	Marine	MKSKEELALMWIIVGLVVIPLVILYPPILLFGLFLYASVKLYNHYNYK
Ga0211539_101544464	3300020437	Marine	MKSKEEIMLLWIVVSLIAIPICILYPPIVVFGIFMYAAINLYKHYSNGXYN
Ga0211539_104719471	3300020437	Marine	KSKEELALMWIIVGLVVIPLCIMYPPIVLMGLFLYATVKLYNHYNVN
Ga0211559_100793095	3300020442	Marine	MKSKEEIALLWIVVSLVAIPICILYPPIVLIGIFMYAAINLYKHYSNGXYN
Ga0211574_1001187310	3300020446	Marine	KEELALMWIIVGLVVIPLCIMYPPIILMSLFLYATVKLYNHYNVN
Ga0211574_100166306	3300020446	Marine	MKSKEELALMWIIVGIVVVPLLILYPPILLFGLFLYAAIKLYKHYNYGK
Ga0211641_101552192	3300020450	Marine	MKNKEEIALMWIIVGLVVIPLCIMYPPIILVGLFLYATVRLYKHYTTQ
Ga0211545_105213422	3300020452	Marine	MLHLRQLKIKKMKNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYATVRLYKHYTTQ
Ga0211676_104102552	3300020463	Marine	MRHLKQLNIKKMRNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYATVKLYKHYTTQ
Ga0211577_100030733	3300020469	Marine	MKTKEEIMLMWIIVGVVVIPLLILFPPIVLVGLFLYAAVNLYKHYST
Ga0211577_100231824	3300020469	Marine	MKSKEELALMWVIVGLVVIPLVILYPPVLIVGLFLYAATKLYNHYNYK
Ga0206687_14326881	3300021169	Seawater	SKEEIVLMWVIVGMVMLPLVFLYPPIILIGIFMYAAIKLYKHYSI
Ga0213867_10919853	3300021335	Seawater	MRSKEEIALLWIVVGLVVIPLVILYPPIVLVGIFMYAAISLYKHYANG
Ga0206692_15160676	3300021350	Seawater	MKSKEEIILMWVIVGLVVIPLAILYPPVILIGIFMYAAIKLYKHYNI
Ga0224906_10208239	3300022074	Seawater	MKSKEEIALLWIVVGLVAIPICILYPPVVLVGIFMYAAISLYKHYANG
(restricted) Ga0233426_101192412	3300022920	Seawater	MKSKEEIILMWVIVGLVVIPLAILYPPTILIGIFMYAAIKLYKHYNI
(restricted) Ga0233406_101015481	3300023085	Seawater	KRASAFGSQKQVMKSKEEIILMWVIVGLVVIPLAILYPPTILIGIFMYAAIKLYKHYNI
(restricted) Ga0233432_101131944	3300023109	Seawater	MRSKEEIVLMWIIVGLVVIPLAILYPPVILIGIFMYAAINLYKHYSK
Ga0244775_103386613	3300024346	Estuarine	MKNKEELALMWIIVGATGIVTTILYPPILLIGIFMYAAISLYKHYKI
Ga0208159_10385094	3300025101	Marine	MKSKEEIMLLWVVVSLIAIPLVIVQPLILVFGIFMYAAISLYKHYANGXYN
Ga0208666_10738463	3300025102	Marine	MKNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYATVRLYKHYTTQ
Ga0208013_11262751	3300025103	Marine	MKNKEEIALMWIIVGLVVIPLCIMYPPIVLVGLFLYASVRLYKHYTTQ
Ga0209535_10365772	3300025120	Marine	MRNKEELALMWVIVGAASIVTIIIYPPIIVAGIFIYAAINLYKHYSNG
Ga0209535_10656104	3300025120	Marine	MRNKEELALMWIIVGAASIVTIIIYPPILLVGIFMYAAVN
Ga0209535_11562604	3300025120	Marine	MRSKEELALMWVIVGAISLVTIIIYPPILLVGIFIYAAINLYKHYSK
Ga0209348_10660432	3300025127	Marine	MKTKEEIMLLWIVVGLVVVPLVILYPPILAFGIFMYATISLYKHYSNG
Ga0209336_100752042	3300025137	Marine	MRNKEELALMWIIVGAASIVTIIIYPPILLVGIFMYAAINLYKHYNI
Ga0209336_100853062	3300025137	Marine	MRSKEEIILMWIIVGLVVIPLAILFPPIILVGIFMYAAVNLYKHYSNG
Ga0209336_101050843	3300025137	Marine	MKSKEEIMLMWIIVGLVMIPLCIVQPFIIVAGIFIYATINLYKHYSNG
Ga0209645_10233597	3300025151	Marine	MKSKEEIALLWIVVSLIAIPLCIVQPLILVFGIFMYATISLYKHYSNG
Ga0208814_11033131	3300025276	Deep Ocean	MVMKNKEELALMWIIVGTASISTIILYPPALLIGIFMYAIINLYKHYNI
Ga0209632_101780775	3300025886	Pelagic Marine	MRSKEEIILMWVIVGVVLLPLCFLFPPLVLIGIFMYAAINLYKHYSK
Ga0247587_10677963	3300026504	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPVVLIGIFMYAAINLYKHYANG
Ga0208941_100254911	3300027077	Marine	MKSKEEIVLMWIIVGLVVIPLSILYPPVILIGIFMYAAINLYKHYSK
Ga0208954_10418322	3300027081	Marine	MKSKEEIVLMWIIVGLVVIPLAILYPPVILIGIFMYAAINLYKHYSK
Ga0209503_103150101	3300027859	Marine	EIMLLWIVVGLVAIPICILYPPVVLIGIFMYAAVSLYKHYANG
Ga0247582_11995983	3300028109	Seawater	MKSKEEIALLWIVVGLVVLPLIILYPPVVLIGIFMYAAISLYKHYANG
Ga0257110_11548983	3300028197	Marine	MRNKEELALMWVIVGAASIVTIIIYPPIIVAGIFIYAAINLYKHYSNGXY
Ga0135211_10435242	3300029293	Marine Harbor	MKSKEEIALLWIVVSLVAIPICILYPPVVLIGIFMYAAINLYKHYSNG
Ga0135212_10311661	3300029306	Marine Harbor	SVSQSRSGYVRKMRTKEEIAILWIIVGLVVVPLCILYPPIIAFGIFMYAAINLYKHYSNG
Ga0307489_103274305	3300031569	Sackhole Brine	MKNKEELALMWVIVGAASIVTIIIYPPILLVGIFMYAAINLYKHYNI
Ga0348337_011782_4158_4304	3300034418	Aqueous	MKSKEEIALMWIVVGLIVIPLVILYPPVVLIGIFMYAAISLYKHYANG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters