Metagenome / Metatranscriptome Family F081313

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081313
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	76 residues
Representative Sequence	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDSEPSPADAMRAIEFLDELLERLPV
Number of Associated Samples	100
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.68 %
% of genes near scaffold ends (potentially truncated)	21.05 %
% of genes from short scaffolds (< 2000 bps)	73.68 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.84

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.632 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (34.210 % of family members)
Environment Ontology (ENVO)	Unclassified (28.070 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.596 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.28% β-sheet: 0.00% Coil/Unstructured: 42.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.84
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.84
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SCOP family	SCOP domain	Representative PDB	TM-score
d.143.1.3: Inositol polyphosphate kinase (IPK)	d1w2fa_	1w2f	0.69978
a.95.1.1: Influenza virus matrix protein M1	d2z16a1	2z16	0.65517
a.74.1.0: automated matches	d4yoza1	4yoz	0.637
e.22.1.2: Iron-containing alcohol dehydrogenase	d1jq5a_	1jq5	0.62418
a.118.1.14: MIF4G domain-like	d1n52a2	1n52	0.61716

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00999	Na_H_Exchanger	22.81
PF03352	Adenine_glyco	9.65
PF00384	Molybdopterin	8.77
PF02080	TrkA_C	3.51
PF02782	FGGY_C	1.75
PF09851	SHOCT	1.75
PF13555	AAA_29	0.88
PF07366	SnoaL	0.88
PF01568	Molydop_binding	0.88
PF13240	zinc_ribbon_2	0.88
PF07730	HisKA_3	0.88
PF03963	FlgD	0.88
PF00296	Bac_luciferase	0.88
PF04945	YHS	0.88
PF02634	FdhD-NarQ	0.88
PF00486	Trans_reg_C	0.88
PF00903	Glyoxalase	0.88
PF00107	ADH_zinc_N	0.88
PF12802	MarR_2	0.88
PF13847	Methyltransf_31	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	22.81
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	22.81
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	22.81
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	22.81
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	22.81
COG2818	3-methyladenine DNA glycosylase Tag	Replication, recombination and repair [L]	9.65
COG1526	Formate dehydrogenase assembly factor FdhD, a sulfurtransferase	Energy production and conversion [C]	0.88
COG1843	Flagellar hook-capping protein FlgD	Cell motility [N]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.88
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.88
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.88
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
All Organisms	root	All Organisms	47.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
cellular organisms	root	All Organisms → cellular organisms	44.74 %
Viruses	superkingdom	All Organisms → Viruses	2.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	19.30 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.02 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.75 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.88 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.75 %
Legionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae	0.88 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.88 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Legionella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella	0.88 %
Iamiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae	0.88 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Legionella feeleii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella feeleii	0.88 %
Actinomarinicola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola	0.88 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Actinomarinicola tropica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola → Actinomarinicola tropica	0.88 %
unclassified Symbiodinium	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium	0.88 %
Legionella feeleii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella feeleii	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.75 %
Symbiodinium sp. KB8	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	0.88 %
Actinomarinicola tropica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola → Actinomarinicola tropica	0.88 %
Legionella feeleii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella feeleii	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105324548	Not Available	539	Open in IMG/M
3300000956\|JGI10216J12902_102559868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4378	Open in IMG/M
3300003324\|soilH2_10302369	All Organisms → cellular organisms → Bacteria	2718	Open in IMG/M
3300004114\|Ga0062593_101839734	Not Available	667	Open in IMG/M
3300004157\|Ga0062590_100966070	Not Available	806	Open in IMG/M
3300004463\|Ga0063356_100822909	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300004480\|Ga0062592_100902491	Not Available	796	Open in IMG/M
3300004643\|Ga0062591_100031470	All Organisms → cellular organisms → Bacteria	2775	Open in IMG/M
3300005167\|Ga0066672_10669676	Not Available	668	Open in IMG/M
3300005174\|Ga0066680_10152002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1448	Open in IMG/M
3300005536\|Ga0070697_100078046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2725	Open in IMG/M
3300005536\|Ga0070697_101733106	Not Available	559	Open in IMG/M
3300005552\|Ga0066701_10557677	Not Available	703	Open in IMG/M
3300005937\|Ga0081455_10128788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1982	Open in IMG/M
3300005937\|Ga0081455_10599585	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300006049\|Ga0075417_10711265	Not Available	516	Open in IMG/M
3300006573\|Ga0074055_11774915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4217	Open in IMG/M
3300006796\|Ga0066665_11650647	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300006844\|Ga0075428_100625019	Not Available	1150	Open in IMG/M
3300006845\|Ga0075421_100051945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5185	Open in IMG/M
3300006853\|Ga0075420_101055514	Not Available	699	Open in IMG/M
3300006880\|Ga0075429_100687634	Not Available	896	Open in IMG/M
3300007004\|Ga0079218_13139596	Not Available	558	Open in IMG/M
3300009012\|Ga0066710_100013903	All Organisms → cellular organisms → Bacteria	8433	Open in IMG/M
3300009012\|Ga0066710_101407303	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300009081\|Ga0105098_10051412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1681	Open in IMG/M
3300009090\|Ga0099827_11979440	Not Available	506	Open in IMG/M
3300009137\|Ga0066709_100062172	All Organisms → cellular organisms → Bacteria	4315	Open in IMG/M
3300009137\|Ga0066709_102395041	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300009157\|Ga0105092_10299951	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012159\|Ga0137344_1091092	Not Available	563	Open in IMG/M
3300012198\|Ga0137364_10150621	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300012199\|Ga0137383_10031222	All Organisms → cellular organisms → Bacteria	3740	Open in IMG/M
3300012200\|Ga0137382_11140404	Not Available	556	Open in IMG/M
3300012201\|Ga0137365_10124695	All Organisms → cellular organisms → Bacteria	1936	Open in IMG/M
3300012206\|Ga0137380_10216799	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300012207\|Ga0137381_10136519	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300012209\|Ga0137379_10632735	Not Available	976	Open in IMG/M
3300012211\|Ga0137377_10321497	Not Available	1482	Open in IMG/M
3300012211\|Ga0137377_11273208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella feeleii	665	Open in IMG/M
3300012285\|Ga0137370_10796694	Not Available	586	Open in IMG/M
3300012349\|Ga0137387_10204244	Not Available	1419	Open in IMG/M
3300012356\|Ga0137371_10045386	Not Available	3394	Open in IMG/M
3300012357\|Ga0137384_10666993	Not Available	846	Open in IMG/M
3300012359\|Ga0137385_10434671	Not Available	1116	Open in IMG/M
3300012951\|Ga0164300_10271523	All Organisms → cellular organisms → Bacteria → Terrabacteria group	872	Open in IMG/M
3300012955\|Ga0164298_10020988	Not Available	2783	Open in IMG/M
3300012955\|Ga0164298_10721336	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300012957\|Ga0164303_10026739	Not Available	2311	Open in IMG/M
3300012960\|Ga0164301_10062517	All Organisms → cellular organisms → Bacteria	1978	Open in IMG/M
3300012960\|Ga0164301_10807817	Not Available	718	Open in IMG/M
3300012961\|Ga0164302_10518566	Not Available	845	Open in IMG/M
3300012985\|Ga0164308_11903872	Not Available	554	Open in IMG/M
3300012986\|Ga0164304_10154809	Not Available	1448	Open in IMG/M
3300012987\|Ga0164307_11541842	Not Available	562	Open in IMG/M
3300013306\|Ga0163162_10123189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2698	Open in IMG/M
3300013764\|Ga0120111_1122018	Not Available	606	Open in IMG/M
3300015077\|Ga0173483_10368863	Not Available	726	Open in IMG/M
3300017997\|Ga0184610_1025331	Not Available	1629	Open in IMG/M
3300018028\|Ga0184608_10004502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4429	Open in IMG/M
3300018028\|Ga0184608_10022500	Not Available	2303	Open in IMG/M
3300018051\|Ga0184620_10010878	Not Available	2067	Open in IMG/M
3300018052\|Ga0184638_1020681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2326	Open in IMG/M
3300018054\|Ga0184621_10006413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Actinomarinicola → Actinomarinicola tropica	3253	Open in IMG/M
3300018054\|Ga0184621_10019827	All Organisms → cellular organisms → Bacteria	2054	Open in IMG/M
3300018056\|Ga0184623_10182912	Not Available	966	Open in IMG/M
3300018061\|Ga0184619_10248069	Not Available	819	Open in IMG/M
3300018073\|Ga0184624_10122447	Not Available	1127	Open in IMG/M
3300018075\|Ga0184632_10019787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2848	Open in IMG/M
3300018422\|Ga0190265_10076835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3040	Open in IMG/M
3300018429\|Ga0190272_10236423	Not Available	1357	Open in IMG/M
3300018433\|Ga0066667_11870493	Not Available	546	Open in IMG/M
3300018468\|Ga0066662_10055056	Not Available	2562	Open in IMG/M
3300018469\|Ga0190270_11250894	Not Available	783	Open in IMG/M
3300018469\|Ga0190270_11921740	Not Available	649	Open in IMG/M
3300018469\|Ga0190270_13169588	Not Available	521	Open in IMG/M
3300018476\|Ga0190274_11696152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300018481\|Ga0190271_10315587	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300019884\|Ga0193741_1150133	Not Available	575	Open in IMG/M
3300019885\|Ga0193747_1051893	All Organisms → Viruses → Predicted Viral	1019	Open in IMG/M
3300020003\|Ga0193739_1058645	Not Available	987	Open in IMG/M
3300020004\|Ga0193755_1081286	All Organisms → Viruses → Predicted Viral	1039	Open in IMG/M
3300020020\|Ga0193738_1009551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3191	Open in IMG/M
3300020020\|Ga0193738_1055133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1194	Open in IMG/M
3300021073\|Ga0210378_10073477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1340	Open in IMG/M
3300021080\|Ga0210382_10090204	Not Available	1265	Open in IMG/M
3300021344\|Ga0193719_10104853	Not Available	1229	Open in IMG/M
3300021418\|Ga0193695_1000786	All Organisms → cellular organisms → Bacteria	5129	Open in IMG/M
3300021510\|Ga0222621_1034522	All Organisms → Viruses → Predicted Viral	1045	Open in IMG/M
3300025927\|Ga0207687_10927733	Not Available	745	Open in IMG/M
3300026327\|Ga0209266_1205188	Not Available	709	Open in IMG/M
3300026532\|Ga0209160_1131432	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300027577\|Ga0209874_1032021	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300027650\|Ga0256866_1122954	Not Available	702	Open in IMG/M
3300027873\|Ga0209814_10518611	Not Available	529	Open in IMG/M
3300027882\|Ga0209590_10217666	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300027909\|Ga0209382_10212880	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	2209	Open in IMG/M
3300028381\|Ga0268264_11012199	Not Available	838	Open in IMG/M
3300028707\|Ga0307291_1063036	Not Available	902	Open in IMG/M
3300028708\|Ga0307295_10018586	Not Available	1690	Open in IMG/M
3300028768\|Ga0307280_10026808	Not Available	1698	Open in IMG/M
3300028811\|Ga0307292_10000201	All Organisms → cellular organisms → Bacteria	19673	Open in IMG/M
3300028814\|Ga0307302_10234377	Not Available	898	Open in IMG/M
3300028824\|Ga0307310_10515618	Not Available	603	Open in IMG/M
3300030006\|Ga0299907_10001915	All Organisms → cellular organisms → Bacteria	12409	Open in IMG/M
3300030006\|Ga0299907_10059448	All Organisms → cellular organisms → Bacteria	3065	Open in IMG/M
3300030006\|Ga0299907_10321909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1257	Open in IMG/M
3300030619\|Ga0268386_10002203	All Organisms → cellular organisms → Bacteria	13744	Open in IMG/M
3300031094\|Ga0308199_1194569	Not Available	508	Open in IMG/M
3300031226\|Ga0307497_10195715	Not Available	872	Open in IMG/M
3300033550\|Ga0247829_10729326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	825	Open in IMG/M
3300034149\|Ga0364929_0337874	Not Available	520	Open in IMG/M
3300034176\|Ga0364931_0022256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1798	Open in IMG/M
3300034354\|Ga0364943_0269764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.60%
Host-Associated	Host-Associated	11.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.68%
Aquatic	Environmental → Aquatic	14.91%
Plants	Host-Associated → Plants	11.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.05%
Sediment	Environmental → Aquatic → Sediment	11.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.39%
Freshwater	Environmental → Aquatic → Freshwater	3.51%
Floodplain	Environmental → Terrestrial → Floodplain	2.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.39%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.51%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.63%
Loam	Environmental → Terrestrial → Soil → Loam	1.75%
Sand	Environmental → Terrestrial → Soil → Sand	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.02%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.39%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.51%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	34.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.04%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.51%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.75%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1053245481	3300000364	Soil	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQPLISSLDSEPSPADAMRAIEFLDELLERLPV*
JGI10216J12902_1025598681	3300000956	Soil	MTTGDIVRERALELARAETAREQAVSELLTTCGGRRVAAVRARQELVARLDSEPGQQDAMRAIEFLDGLLEKLPD*
soilH2_103023694	3300003324	Sugarcane Root And Bulk Soil	MTTGETVRERAMELARQDADRSLAVEVLLTACGGRRVAAVRARQELDAWLDSERDQAHAMRAIGYIDEVLKRLQV*
Ga0062593_1018397341	3300004114	Soil	MTTGDIVRERAVELARTETDREQAVSELFESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLE
Ga0062590_1009660701	3300004157	Soil	MTTGDIVRERAVELARTETDREQAVSELFESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLER
Ga0063356_1008229091	3300004463	Arabidopsis Thaliana Rhizosphere	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLERLPV*
Ga0062592_1009024911	3300004480	Soil	ELARTETDREQAVSELFESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLERLPV*
Ga0062591_1000314703	3300004643	Soil	MTTGDIVRERAVELARTETDREQAVSELFESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLERLPV*
Ga0066672_106696761	3300005167	Soil	EQRPIGVSSFASDRSREDRMTTGDVVRERALELARTETDQEQAVSELLESCGGRRVPVVSAHQHLIASLDSEPSAADTMKAIEFLDELLERLPV*
Ga0066680_101520023	3300005174	Soil	MTTGDVVRERALELARTETDQEQAVSELLESCGGRRVPVVSAHQHLIASLDSEPSAADTMKAIEFLDELLERLPV*
Ga0070697_1000780462	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTTGDVVRERALTLARSGTDRDQAVSELLTTCGGRRVAAVRARQQLLEELETEPNQPEATRAIEFLDEVLEGLPA*
Ga0070697_1017331061	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTTGDFVRERALELARTETDREKAVSELLESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPI*
Ga0066701_105576771	3300005552	Soil	MTTGDVVRERALELARAETDQEQAVSELLESCGGRRVPVVSAHQHLIASLDSEPSAADTMKAIEFLDELLERLPV*
Ga0081455_101287883	3300005937	Tabebuia Heterophylla Rhizosphere	MTTADAVRERALSLARSGIEREDALRDLQDCCGDRRVSVVRARQQLTTWLDSEPDQADAMRAIELLDELLERLPA*
Ga0081455_105995851	3300005937	Tabebuia Heterophylla Rhizosphere	MTAEAVRERALELARSGADQEDAVRELEISCEGRRVAAVRARQQLLARLDGEPDHQDARVAIGFVDLLLARLPA*
Ga0075417_107112652	3300006049	Populus Rhizosphere	MTTADAVRERALTLARETTDRDEALRDLRAFSGDRRVSVVRARQQLVAWLDSETDQSDAMRAIELLDELLDRLPA*
Ga0074055_117749156	3300006573	Soil	MTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMRAIEFLDELLERLPV*
Ga0066665_116506471	3300006796	Soil	RALELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMKAIEFLDELLERLPV*
Ga0075428_1006250192	3300006844	Populus Rhizosphere	MTTADTVRERALELARARTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIGFLDELLKRLPA*
Ga0075421_1000519456	3300006845	Populus Rhizosphere	MTTADAVRERALTLARETTDRDEALRDLRAFSGDRRVSVVRARQQLVAWLDSETDRDAMRAIELLDELLDRLPA*
Ga0075420_1010555141	3300006853	Populus Rhizosphere	MTTADTVRERALELARARTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIGFLDELLKRLP
Ga0075429_1006876341	3300006880	Populus Rhizosphere	MTREDLMTTADTVRERALELARARTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIGFLDELLKRLPA*
Ga0079218_131395961	3300007004	Agricultural Soil	MTTADVVRERALALARSGTDRDQAVRELEISCEGRRVAAVRARQQLLALLDGEPDQQDAMVAVEFLDGLLARLPG*
Ga0066710_10001390310	3300009012	Grasslands Soil	MTTGDIVRERALELARSETDREQAVSELLMSCGGRRVPVVSARQHLLASLDSVPDPADAMQAIEFLDELLEKLPI
Ga0066710_1014073031	3300009012	Grasslands Soil	MTTGDIVRERALDLARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPV
Ga0105098_100514122	3300009081	Freshwater Sediment	VTREDLMTTGDTVRERALELARARTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIEFLDELLKRLPA*
Ga0099827_119794401	3300009090	Vadose Zone Soil	MTTGDIVRERALGLARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPV*
Ga0066709_1000621723	3300009137	Grasslands Soil	MTTGDIVRERALELARSETDREQAVSELLMSCGGRRVPVVSARQHLLASLDSVPDPADAMQAIEFLDELLEKLPI*
Ga0066709_1023950411	3300009137	Grasslands Soil	MTTGDIVRERALELARTETDRERAVSELLESCGGRRVPVVSARQHLIASVDSDPDPADAMKAIGFLDELLERLPI*
Ga0105092_102999511	3300009157	Freshwater Sediment	MTTAETVRERALELARARTDREQAVPELLTACGGRRGAAVRARQQLVTWLDSEPDQQDAM
Ga0137344_10910921	3300012159	Soil	VTREDLMTTGDIVRERALELARAQTDREQAVPELLTACGGRRVAVVRARQQLVTWLDSEPDQQDGVRAIEFLDELLERLPA*
Ga0137364_101506211	3300012198	Vadose Zone Soil	RSREDRMTTGDIVRERALDLARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPV*
Ga0137383_100312222	3300012199	Vadose Zone Soil	MTTGDVVRERALELARTETDKEQAVSELLESCGGRRVPVVSARQHLIASLDSEPSPADAMEAIEFLDELLERLPV*
Ga0137382_111404041	3300012200	Vadose Zone Soil	MTTGDIVRERALELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMKAIEFLDELLER
Ga0137365_101246953	3300012201	Vadose Zone Soil	MTTGDIVRQRALDLARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMRAIEFLDELLERLPV*
Ga0137380_102167991	3300012206	Vadose Zone Soil	MGVSSFASDRSREDRMTTGDIVRERALELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMKAIE
Ga0137381_101365192	3300012207	Vadose Zone Soil	MGDSSFASDRSREDRMTTGDIVRERALDLARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMKAIEFLDELLGRLPV*
Ga0137379_106327352	3300012209	Vadose Zone Soil	MGDSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPV*
Ga0137377_103214971	3300012211	Vadose Zone Soil	DIVRERALELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMKAIEFLDELLERLPV*
Ga0137377_112732082	3300012211	Vadose Zone Soil	MGVSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELVERLPV*
Ga0137370_107966941	3300012285	Vadose Zone Soil	MTTGDIVRERALELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPV*
Ga0137387_102042442	3300012349	Vadose Zone Soil	MTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPV*
Ga0137371_100453862	3300012356	Vadose Zone Soil	MTTGDIVRERALDLARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMKAIEFLDELLERLPV*
Ga0137384_106669932	3300012357	Vadose Zone Soil	MTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELVERLPV*
Ga0137385_104346712	3300012359	Vadose Zone Soil	MGDSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADGMKAIEFLDELLGRLPV*
Ga0164300_102715232	3300012951	Soil	MTTGDIVRERALELARTETDREQAVSALLESCGGRRVPVVSARQHLIASLDTEPSPADAMRAIEFLDELLERLPV*
Ga0164298_100209881	3300012955	Soil	MTTGDIVRERALELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDTEPRPADAMRAIECSDELLERLPV*
Ga0164298_107213361	3300012955	Soil	ASDRSREDRMTTGDIVRERALELARTETDREQAVSALLESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLERLPV*
Ga0164303_100267393	3300012957	Soil	MTTGDIVRERALELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMRAIEFLDELLERLPV*
Ga0164301_100625173	3300012960	Soil	MTTGDIVRERALELARTETDREHAVSALFESCGGRRVPVVSARQHLIASLDTEPSPADAMRAIEFLDELLERLPV*
Ga0164301_108078171	3300012960	Soil	MTTGDIVRERALELARTETDREQAVSALLESCGGRRVPVVSARQHLIASLDTEPSPADAMRAIEFLDQLLQRLPV*
Ga0164302_105185662	3300012961	Soil	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLERLHV*
Ga0164308_119038722	3300012985	Soil	MTTGDIVRERALELARTETDREHAVSELFESCGGRRVPVVSAGQHLIASLDTEPSPADAMRAIEFLDELLERLPV*
Ga0164304_101548092	3300012986	Soil	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQNLISSLDSEPSTEDAMRAIEFLDELLERLPV*
Ga0164307_115418422	3300012987	Soil	VRERALELARTETDREQAVSALLESCGGRRVPVVSARQHLIASLDTEPSPADAMRAIEFLDELLERLPV*
Ga0163162_101231893	3300013306	Switchgrass Rhizosphere	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLISSLDSEPSPADAMRAVECLDELLERLTV*
Ga0120111_11220182	3300013764	Permafrost	MGVSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERIPV*
Ga0173483_103688631	3300015077	Soil	MGVSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEF
Ga0184610_10253312	3300017997	Groundwater Sediment	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0184608_100045026	3300018028	Groundwater Sediment	MTTGDIVRERALELARSLADRNLAVDELLETCGGRRVAAVRARQQLVTRLDSEPDQQDAKRAIEFLDDLLARLPA
Ga0184608_100225002	3300018028	Groundwater Sediment	MTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0184620_100108781	3300018051	Groundwater Sediment	PVEVRLRRPTLEQRPMGVSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0184638_10206813	3300018052	Groundwater Sediment	MTTGDIVRGRALELASSLTDRDLAVEELLETCGGRRVAAVRARQQLVTWLDSEPGQQDAMRAIEFLDDLLARLPA
Ga0184621_100064131	3300018054	Groundwater Sediment	MTTGDIVRERALELARSLADRDLAVDELLETCGGRRVAAVRARQQLVTTLDSEPDQQDAKRAIEFLDDLLARLPA
Ga0184621_100198271	3300018054	Groundwater Sediment	MTTGDIVRERALELARSLADRNLAVDELLETCGGRRVAAVRARQQLVTRLDSEPDQQDARRAIEFLDDLL
Ga0184623_101829122	3300018056	Groundwater Sediment	MTTGDIVRERALELARSLADRNLAVDELLETCGGRRVAAVRARQQLVTRLDSEPDQQDARRAIEFLDDLLARLPA
Ga0184619_102480692	3300018061	Groundwater Sediment	MTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADGMKAIEFLDELLERLPV
Ga0184624_101224472	3300018073	Groundwater Sediment	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDREPSPADAMRAIEFLDELLERLPV
Ga0184632_100197873	3300018075	Groundwater Sediment	MTTGDIVRERALELASSLTDRDLAVEELLETCGGRRVAAVRARQQLVTWLDSEPGQQDAMRAIEFLDDLLARLPA
Ga0190265_100768354	3300018422	Soil	MTTGDIVRERALELARSSTDREQAVSELLTCCGGRRVAAVRARQQLVASLDSEPDQSDAMRAVEYLDELLEKLPA
Ga0190272_102364233	3300018429	Soil	MPEQRQLAQLVRVRSKEDLMTTGDIVRERALELARSSTDREQAVSELLTSCGGRRVAAVSARQQLVASLDSEPDRSHAMRAVEYLDELLEKLPA
Ga0066667_118704931	3300018433	Grasslands Soil	MTTGDIVRERALELARSETDREQAVSELLMSCGGRRVPVVSARQHLLASLDSVPDPADAMQAIEFLDELLERLPV
Ga0066662_100550564	3300018468	Grasslands Soil	MTTGDVVRERALELARTETDQEQAVSELLESCGGRRVPVVSARQHLIASLDSEPSAADTMKAIEFLDELLERLPV
Ga0190270_112508942	3300018469	Soil	MTTGDIVRERALELARSSTDREQAVSELLTCCGGRRVAAVSARQQLVASLDGEPDQRHAMRAVEFLDALLGKLPA
Ga0190270_119217401	3300018469	Soil	MTTGDIVRERALELARSSTDREQAVSELLTCCGGRRVAAVSARQQLVASLDGEPDQRHAMRA
Ga0190270_131695882	3300018469	Soil	MTTGDTVRERAMELARAQTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIEFLDELLKRLPA
Ga0190274_116961521	3300018476	Soil	MTTADTVRERALELARAQTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQPDAMRAIEFLDELLKRLPA
Ga0190271_103155871	3300018481	Soil	MTTGDTVRERALELARARTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIEFLDELLKRLPA
Ga0193741_11501331	3300019884	Soil	MTTADTVRERALELARAQTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQHAMRAIEFLDELLKRLPA
Ga0193747_10518931	3300019885	Soil	QRPMGVSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0193739_10586451	3300020003	Soil	MTTGDIVRERALELARAQTDREQAVPELLTACGGRRVAVVRARQQLVTWLDSEPDQQDAVRAIEFLDELLERLPA
Ga0193755_10812862	3300020004	Soil	MTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMRAIEFLDELLGRLPV
Ga0193738_10095513	3300020020	Soil	MTTGDIVRERALELARAQTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAIRAIEFLDELLKRLPA
Ga0193738_10551332	3300020020	Soil	MTTGDIVRERALELARAQTDGQQAVPELLTACGGRRVAAVRARQQLVTRLDSEPDQQDAVRAIEFLDELLKRLPA
Ga0210378_100734772	3300021073	Groundwater Sediment	MTTGDIVRERALELARSLADRDLAVDELLETCGGRRVAAVRARQQLVTRLDSEPDQQDAKRAIEFLDDLLARLPA
Ga0210382_100902041	3300021080	Groundwater Sediment	MGVSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0193719_101048533	3300021344	Soil	MTTGDSVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMRAIEFLDELLERLPV
Ga0193695_10007862	3300021418	Soil	VRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADGMKAIEFLDELLERLPV
Ga0222621_10345222	3300021510	Groundwater Sediment	PRGVSSFASDRSREDRMTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0207687_109277331	3300025927	Miscanthus Rhizosphere	RSRLIDSREDRMTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLERLPV
Ga0209266_12051882	3300026327	Soil	ELARTETDREHAVSELFESCGGRRVPVVSARQHLIASLDTEPSPADAMKAIEFLDELLERLPV
Ga0209160_11314322	3300026532	Soil	MTTGDVVRERALELARAETDQEQAVSELLESCGGRRVPVVSAHQHLIASLDSEPSAADTMKAIEFLDELLERLPV
Ga0209874_10320213	3300027577	Groundwater Sand	MTTADVLTERALSLARSGADTDEAVRELLVLCGGRRVAAVRARQHVVVWLDSAPDQRAAMQAMGFLDELLNRLPV
Ga0256866_11229542	3300027650	Soil	MTTGDIVRERALELAHSETDREQAVSELLTSCGGRRVAAVRARQQLAAWLDREPDQRDAIRAIEFLDELLGKMPA
Ga0209814_105186111	3300027873	Populus Rhizosphere	MTTADAVRERALTLARETTDRDEALRDLRAFSGDRRVSVVRARQQLVAWLDSETDQSDAMRAIELLDELLDRLPA
Ga0209590_102176661	3300027882	Vadose Zone Soil	MTTGDIVRERALGLARTETDREQAVSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMKAIEFLDELLERLPV
Ga0209382_102128803	3300027909	Populus Rhizosphere	MTTADTVRERALELARARTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIGFLDELLKRLPA
Ga0268264_110121992	3300028381	Switchgrass Rhizosphere	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLISSLDSEPSPADAMRAIEFLDELLERLPV
Ga0307291_10630362	3300028707	Soil	TTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDSEPSPADAMRAIEFLDELLERLPV
Ga0307295_100185862	3300028708	Soil	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDSEPSPADAMRAIEFLDELLERLPV
Ga0307280_100268083	3300028768	Soil	MTTGDIVRERALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDSEPSPADAMMAIEFLDELLERLPV
Ga0307292_1000020117	3300028811	Soil	MTTGDIVREHALELARTETDREQAVSELLESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0307302_102343771	3300028814	Soil	MTTGDIVRERALELASSLTDRDLAVEELLETCGGRRVAAVRARQQLVTWLDSEPEQQDAMRAIEFLD
Ga0307310_105156182	3300028824	Soil	MTTGDIVRERALELARTKTDREQAVSELFESCGGRRVPVISARQHLIASLGSEPSPAAGMKAI
Ga0299907_100019158	3300030006	Soil	MTTADEVRERALALARSQTEQDEALRDLQECCGDRRVSAVRARQQLVAWLDSETDQPDAMRAIELLDELLDRLPA
Ga0299907_100594483	3300030006	Soil	MTTGDMVRERALELARAQTDREQAVPELLAACGGRRVAAVRAREQLVTWLDSEPDQQDAMRAIEFLDELLKRLPA
Ga0299907_103219093	3300030006	Soil	MTTGDTVRERAMELARAQTDRDQAVPELLTACGGRRVAAVRARQQLVTWLDSEPDQQDAMRAIEFLDDLLKRLPA
Ga0268386_1000220312	3300030619	Soil	MTTADEVRERALALARSKTEQDEALRDLQECCGDRRVSAVRARQQLVAWLDSETDQPDAMRAIELLDELLDRLPA
Ga0308199_11945692	3300031094	Soil	MTTGDIVRERALELARTETDREQALSELFESCGGRRVPVVSARQHLIASLDSEPSPADAMRAIEFLDELLERLPV
Ga0307497_101957152	3300031226	Soil	MTTGDIVRERALELARTETDREQAVSELFESCGGRRVPVVSARQHLISSLDTEPSPADAMRAIEFLDELLERLPV
Ga0247829_107293261	3300033550	Soil	MTTGDIVTERALELARTETDRAQAVSELLESCGGRRVPVVSARQHLIASLDNEPSPADAMRAIEFLDELLERLPV
Ga0364929_0337874_243_488	3300034149	Sediment	VTKEDLMTTGDIVRERALELARAQTDREQAVPELLTACGGRRVAAVRARQQLVTWLDSETDQQDAMRAIEFLDELLKRLPA
Ga0364931_0022256_603_848	3300034176	Sediment	VTREDLMTTGDIVRERALELARAQTDREQAVPELLTACGGRRVAVVRARQQLVTWLDSEPDQQDGVRAIEFLDELLDRLPA
Ga0364943_0269764_203_448	3300034354	Sediment	VTREDLMTTGDIVRERALELARAQTDREQAVPELLTACGGRRVAVVRARQQLVTWLDSEPDQQDGVRAIEFLDELLERLPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081313

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences