Metagenome / Metatranscriptome Family F081309

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081309
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	64 residues
Representative Sequence	MWPIKRFMIRIEAPTWEDFEDVELPRLPLVGETIETKYGTCVVTQTDASPSTAPYQGKIVCRVP
Number of Associated Samples	94
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.89 %
% of genes near scaffold ends (potentially truncated)	32.46 %
% of genes from short scaffolds (< 2000 bps)	92.11 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.228 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.316 % of family members)
Environment Ontology (ENVO)	Unclassified (36.842 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.105 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 39.13% Coil/Unstructured: 60.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.53.1.1: Ribosomal protein L25-like	d1feua_	1feu	0.64105
b.53.1.1: Ribosomal protein L25-like	d1dfup_	1dfu	0.63071
d.113.1.2: IPP isomerase-like	d1hzta1	1hzt	0.62929
b.168.1.1: HisI-like	d1zpsa1	1zps	0.62775
d.113.1.1: MutT-like	d1jkna1	1jkn	0.62618

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00027	cNMP_binding	19.30
PF08448	PAS_4	3.51
PF12728	HTH_17	2.63
PF00857	Isochorismatase	2.63
PF09118	GO-like_E_set	0.88
PF00483	NTP_transferase	0.88
PF07883	Cupin_2	0.88
PF00082	Peptidase_S8	0.88
PF13738	Pyr_redox_3	0.88
PF01551	Peptidase_M23	0.88
PF05988	DUF899	0.88
PF05014	Nuc_deoxyrib_tr	0.88
PF00248	Aldo_ket_red	0.88
PF13517	FG-GAP_3	0.88
PF09137	Glucodextran_N	0.88
PF03476	MOSC_N	0.88
PF00211	Guanylate_cyc	0.88
PF00266	Aminotran_5	0.88
PF14559	TPR_19	0.88
PF00486	Trans_reg_C	0.88
PF01636	APH	0.88
PF01041	DegT_DnrJ_EryC1	0.88
PF05977	MFS_3	0.88
PF00282	Pyridoxal_deC	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	2.63
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.63
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.88
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.88
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.88
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.88
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.88
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.88
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.88
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.88
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.88
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.88
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	0.88
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.23 %
Unclassified	root	N/A	8.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.23 %
Unclassified	root	N/A	8.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.23 %
Unclassified	root	N/A	8.77 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.67 %
Unclassified	root	N/A	8.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	57.89 %
Unclassified	root	N/A	8.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.51 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.18 %
Unclassified	root	N/A	8.77 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.39 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	14.91 %
Unclassified	root	N/A	8.77 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	4.39 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.88 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.88 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.88 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Unclassified	root	N/A	8.77 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.88 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.88 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Unclassified	root	N/A	8.77 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Phytohabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans	0.88 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.88 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.88 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Unclassified	root	N/A	8.77 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Phytohabitans flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus	0.88 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.88 %
Kribbella antibiotica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella antibiotica	0.88 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.91 %
Unclassified	root	N/A	8.77 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	4.39 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.51 %
Rhizobium sp. SEMIA 4085	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SEMIA 4085	0.88 %
Phytohabitans flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus	0.88 %
Kribbella antibiotica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella antibiotica	0.88 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10753037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300000890\|JGI11643J12802_10826454	All Organisms → cellular organisms → Bacteria → Terrabacteria group	865	Open in IMG/M
3300000956\|JGI10216J12902_100765403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300000956\|JGI10216J12902_102615259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus	1289	Open in IMG/M
3300004114\|Ga0062593_100089879	All Organisms → cellular organisms → Bacteria	2119	Open in IMG/M
3300004114\|Ga0062593_101207895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	794	Open in IMG/M
3300004480\|Ga0062592_101499439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	647	Open in IMG/M
3300004643\|Ga0062591_101725367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	636	Open in IMG/M
3300005168\|Ga0066809_10026876	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300005355\|Ga0070671_100971730	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300005441\|Ga0070700_100776624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	769	Open in IMG/M
3300005455\|Ga0070663_101484439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300005471\|Ga0070698_101441465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300005518\|Ga0070699_100126766	All Organisms → cellular organisms → Bacteria	2248	Open in IMG/M
3300005543\|Ga0070672_100393540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1187	Open in IMG/M
3300005549\|Ga0070704_100869924	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005618\|Ga0068864_101203037	All Organisms → cellular organisms → Bacteria → Terrabacteria group	756	Open in IMG/M
3300005718\|Ga0068866_10441302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	849	Open in IMG/M
3300005719\|Ga0068861_102286497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300005840\|Ga0068870_11212083	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300006575\|Ga0074053_12002301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	820	Open in IMG/M
3300006581\|Ga0074048_12945440	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300006606\|Ga0074062_12614527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300006881\|Ga0068865_100132035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1872	Open in IMG/M
3300009094\|Ga0111539_13106083	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009148\|Ga0105243_10185641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1812	Open in IMG/M
3300009789\|Ga0126307_10073217	All Organisms → cellular organisms → Bacteria	2699	Open in IMG/M
3300010036\|Ga0126305_10288636	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300010045\|Ga0126311_11776311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300010147\|Ga0126319_1636114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300010400\|Ga0134122_12625996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	555	Open in IMG/M
3300012232\|Ga0137435_1066210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	1068	Open in IMG/M
3300012951\|Ga0164300_11017499	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300014254\|Ga0075312_1039058	Not Available	879	Open in IMG/M
3300014271\|Ga0075326_1044130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300014302\|Ga0075310_1151261	Not Available	528	Open in IMG/M
3300014325\|Ga0163163_10339513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1557	Open in IMG/M
3300014326\|Ga0157380_10395724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1309	Open in IMG/M
3300015201\|Ga0173478_10484969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	615	Open in IMG/M
3300015371\|Ga0132258_10502143	All Organisms → cellular organisms → Bacteria	3033	Open in IMG/M
3300015371\|Ga0132258_11315719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1826	Open in IMG/M
3300015371\|Ga0132258_12553251	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300015371\|Ga0132258_13815547	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1026	Open in IMG/M
3300015372\|Ga0132256_101999075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	686	Open in IMG/M
3300015373\|Ga0132257_101080023	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300015373\|Ga0132257_102587564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	660	Open in IMG/M
3300015374\|Ga0132255_103950213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300017965\|Ga0190266_10011439	All Organisms → cellular organisms → Bacteria	2290	Open in IMG/M
3300018052\|Ga0184638_1132386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	907	Open in IMG/M
3300018053\|Ga0184626_10272105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300018072\|Ga0184635_10337339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300018073\|Ga0184624_10160006	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300018073\|Ga0184624_10310093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300018075\|Ga0184632_10332959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300018076\|Ga0184609_10551230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300018078\|Ga0184612_10203924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1027	Open in IMG/M
3300018422\|Ga0190265_11815152	Not Available	718	Open in IMG/M
3300018466\|Ga0190268_10053033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1623	Open in IMG/M
3300018466\|Ga0190268_10997636	Not Available	666	Open in IMG/M
3300018469\|Ga0190270_10000133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32918	Open in IMG/M
3300018469\|Ga0190270_10012270	All Organisms → cellular organisms → Bacteria	4923	Open in IMG/M
3300018469\|Ga0190270_10101654	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300018469\|Ga0190270_10414687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1252	Open in IMG/M
3300018469\|Ga0190270_11122860	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300018469\|Ga0190270_12172811	Not Available	615	Open in IMG/M
3300018481\|Ga0190271_10038708	All Organisms → cellular organisms → Bacteria	3942	Open in IMG/M
3300018481\|Ga0190271_10914796	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300019356\|Ga0173481_10248491	All Organisms → cellular organisms → Bacteria → Terrabacteria group	799	Open in IMG/M
3300019888\|Ga0193751_1219064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	619	Open in IMG/M
3300022756\|Ga0222622_10368665	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300025919\|Ga0207657_11178332	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300025926\|Ga0207659_10790952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	815	Open in IMG/M
3300025927\|Ga0207687_10300317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1293	Open in IMG/M
3300025932\|Ga0207690_10587620	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300025935\|Ga0207709_10518489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	933	Open in IMG/M
3300025940\|Ga0207691_10356321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1251	Open in IMG/M
3300025941\|Ga0207711_11939759	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300025981\|Ga0207640_11138946	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300026075\|Ga0207708_10715763	All Organisms → cellular organisms → Bacteria → Terrabacteria group	857	Open in IMG/M
3300026075\|Ga0207708_10911731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	761	Open in IMG/M
3300026095\|Ga0207676_11055734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	802	Open in IMG/M
3300026121\|Ga0207683_10610281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SEMIA 4085	1010	Open in IMG/M
3300028587\|Ga0247828_11005398	Not Available	545	Open in IMG/M
3300028589\|Ga0247818_11394625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300028592\|Ga0247822_10744279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300028720\|Ga0307317_10204045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	667	Open in IMG/M
3300028744\|Ga0307318_10208408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	677	Open in IMG/M
3300028771\|Ga0307320_10235440	Not Available	720	Open in IMG/M
3300028796\|Ga0307287_10173700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	819	Open in IMG/M
3300028802\|Ga0307503_10108361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1196	Open in IMG/M
3300028802\|Ga0307503_10190628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	963	Open in IMG/M
3300028802\|Ga0307503_10220548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	910	Open in IMG/M
3300028802\|Ga0307503_10812660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300028803\|Ga0307281_10315393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300028814\|Ga0307302_10124954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1238	Open in IMG/M
3300028824\|Ga0307310_10284117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella antibiotica	802	Open in IMG/M
3300028885\|Ga0307304_10490908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300028889\|Ga0247827_10489536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	767	Open in IMG/M
3300030006\|Ga0299907_10289104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1339	Open in IMG/M
3300031226\|Ga0307497_10096425	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300031228\|Ga0299914_10317628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1369	Open in IMG/M
3300031229\|Ga0299913_10206443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1944	Open in IMG/M
3300031824\|Ga0307413_11798153	Not Available	548	Open in IMG/M
3300031847\|Ga0310907_10646821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300031995\|Ga0307409_100705329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1009	Open in IMG/M
3300032075\|Ga0310890_11204207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300032126\|Ga0307415_101904701	Not Available	577	Open in IMG/M
3300032174\|Ga0307470_11052123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300032179\|Ga0310889_10653955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300033550\|Ga0247829_10809912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	780	Open in IMG/M
3300033550\|Ga0247829_11084648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300033550\|Ga0247829_11728544	Not Available	516	Open in IMG/M
3300034149\|Ga0364929_0258226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300034354\|Ga0364943_0336684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.05%
Host-Associated	Host-Associated	28.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.40%
Plants	Host-Associated → Plants	28.95%
Aquatic	Environmental → Aquatic	9.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.16%
Sediment	Environmental → Aquatic → Sediment	8.77%
Floodplain	Environmental → Terrestrial → Floodplain	1.75%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Roots	Host-Associated → Plants → Roots	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.14%
Loam	Environmental → Terrestrial → Soil → Loam	5.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.63%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.88%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.51%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.63%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.75%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.02%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.14%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.63%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.75%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.75%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_107530371	3300000858	Soil	MWPIKRFLITIEAPNWKDFEDVELPRLPVVGETIETKYGTCLVTQTDSPPGTEPYEGKIVCRVP*
JGI11643J12802_108264542	3300000890	Soil	GLVASSCIMWLIKRFMIKVEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGTAPYEGKIVCRVP*
JGI10216J12902_1007654031	3300000956	Soil	IKRFMIKIEAPAWEDFEDVELPRLPLVGETIETKYGTCLVTGTEASSGTAPYEGKIVCRVP*
JGI10216J12902_1026152592	3300000956	Soil	MWPIKRFMITIQAPTWQDFEDVELPRLPTVGETIETKYGTCLVTQTDASADTAPYQGKIVCRFP*
Ga0062593_1000898792	3300004114	Soil	MMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0062593_1012078951	3300004114	Soil	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKI
Ga0062592_1014994392	3300004480	Soil	MWLIKRFMIKVEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGTAPYEGKIVCRVP*
Ga0062591_1017253671	3300004643	Soil	MMWTIKRFMITIEAPGWKDVQDVELTRLPDVGETIETKYGTCLVTETDASPGPGPYAGKIVCRMP*
Ga0066809_100268763	3300005168	Soil	MCPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0070671_1009717301	3300005355	Switchgrass Rhizosphere	APTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0070700_1007766241	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	SCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0070663_1014844391	3300005455	Corn Rhizosphere	EDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0070698_1014414651	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MWTIKRFLITIETPDWEDFQDIELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP*
Ga0070699_1001267663	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MITIEAPAWEDVQDMELPRLPEVGETIETKYGTCLVTQTDASPGPGPYAGKIVCRMP*
Ga0070672_1003935402	3300005543	Miscanthus Rhizosphere	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0070704_1008699242	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCPVP*
Ga0068864_1012030371	3300005618	Switchgrass Rhizosphere	QNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0068866_104413022	3300005718	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0068861_1022864972	3300005719	Switchgrass Rhizosphere	MWPIKRFLIRIEAPNWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0068870_112120832	3300005840	Miscanthus Rhizosphere	AEALSHAQNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0074053_120023012	3300006575	Soil	MCPIKRFLIKFEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0074048_129454402	3300006581	Soil	VAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0074062_126145272	3300006606	Soil	WEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0068865_1001320353	3300006881	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDVSPTTAPYQGKIVCRVP*
Ga0111539_131060831	3300009094	Populus Rhizosphere	MIKIEAPTWEDVEDVELPRLPAVGTTIETKYGTCVVTQTDPSFTSAPYEGKIVCRVP*
Ga0105243_101856411	3300009148	Miscanthus Rhizosphere	LHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0126307_100732172	3300009789	Serpentine Soil	MHHVAIKRFMITIEAPAWKDFEDVELPRSPAVGETIETKYGTCLVTQTEPSPGTAPYEGKIVCRLP*
Ga0126305_102886361	3300010036	Serpentine Soil	DVELPRSPAVGETIETKYGTCLVTQTEPSPGTAPYEGKIVCRLP*
Ga0126311_117763111	3300010045	Serpentine Soil	MHHVAIKRFMITIEAPAWKDFEDVELPRSPVVGETIETKYGTCLVTQTDASPGTAPYEGKIVCRLP*
Ga0126319_16361141	3300010147	Soil	RRAAGRPERRATSSCIMWTIKRFMVTIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRRP*
Ga0134122_126259962	3300010400	Terrestrial Soil	MWTIKRFMITIETPNWEDFQDMELPRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRLP*
Ga0137435_10662102	3300012232	Soil	VTIKRFMITIEAPNWKDVQDVELPRLPEIGETIETKYGTCFVTQTDASPGNGPYAGKIVCRMP*
Ga0164300_110174991	3300012951	Soil	HAQYERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0075312_10390581	3300014254	Natural And Restored Wetlands	MMWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP*
Ga0075326_10441303	3300014271	Natural And Restored Wetlands	MWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP*
Ga0075310_11512611	3300014302	Natural And Restored Wetlands	MWPIKRFMIRIEAPTWEDFEDVELPRLPEVGETIQTKYGTCVVTQTDASPSTAPYQGKIVCRLP*
Ga0163163_103395132	3300014325	Switchgrass Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFVDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP*
Ga0157380_103957241	3300014326	Switchgrass Rhizosphere	HRAAEALSHAQNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP*
Ga0173478_104849692	3300015201	Soil	EPPANERQGIPSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVMETDASFNSAPYEGKIVCRVP*
Ga0132258_105021434	3300015371	Arabidopsis Rhizosphere	MSLIKRFMIKIEAPTWEDVEDVELPRLPAVGSTIETKYGTCVVTETDASFGSAPYEGKIVCRVP*
Ga0132258_113157191	3300015371	Arabidopsis Rhizosphere	MGVARAVGYLAMHHVAIKRFLIKIEAPSWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0132258_125532512	3300015371	Arabidopsis Rhizosphere	MMWLIKRFMIRIEAPTWEDVEDVELPGLPAVGATIETKYGTCVVTETDASFGTAPYEGKIVCRVP*
Ga0132258_138155472	3300015371	Arabidopsis Rhizosphere	MMWRIKRVMITIEGPGWEDFEEVELLQLPVVGEAIETKYGTCLVTQTDSLPGTEPYEGKIVCRTA*
Ga0132256_1019990752	3300015372	Arabidopsis Rhizosphere	MHHVAIKRFLIKIEAPSWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP*
Ga0132257_1010800233	3300015373	Arabidopsis Rhizosphere	MMCPIKRFLIRIEAPSWEDFEDVELPHLPVVGETIETKYGTCLVTETDASPDTVPYQGKIVCRVP*
Ga0132257_1025875642	3300015373	Arabidopsis Rhizosphere	MGYLAMHHVAIKRFLIKIEAPSWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRTG*
Ga0132255_1039502132	3300015374	Arabidopsis Rhizosphere	MITIEGAGWEDFEEVELLQLPVVGETIETKYGTCLVTQTDSPPRTEPYDGKIVC*
Ga0190266_100114392	3300017965	Soil	MVTIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTQTDASPGAAPYAGKIVCRRP
Ga0184638_11323863	3300018052	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTAPYAGK
Ga0184626_102721053	3300018053	Groundwater Sediment	GLREGRNAQATSSCIMWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRRP
Ga0184635_103373391	3300018072	Groundwater Sediment	MWTIKRFMITIETPDWKDVQDTELPRLPEVGETIETKYGTCLVTQTDASPGTAPYAGKIVCRRP
Ga0184624_101600061	3300018073	Groundwater Sediment	MVTIQAPTWEDFEDVELPRLPGVGETIETKYGTCLVTETDASSGTAPYQGKIVCRIP
Ga0184624_103100931	3300018073	Groundwater Sediment	ITIETPDWEDFQDIELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRLP
Ga0184632_103329591	3300018075	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRRP
Ga0184609_105512301	3300018076	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPEVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0184612_102039241	3300018078	Groundwater Sediment	MWTIKRFMITIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0190265_118151521	3300018422	Soil	IKTFMITIQAPTWEDFEDLELPPLPMVGETIETKYGTCLVTQTDASSGTAPYQGKIVCRI
Ga0190268_100530333	3300018466	Soil	MITIQAPAWEDVESVELPRLPAVGETIETKYGTCLVTQADASSDTGPYQGKIVCRFP
Ga0190268_109976362	3300018466	Soil	MWPIKRFMITIQAPTWEDFEDVELPRLPVVGETVETKYGTCLVTQADASSGTAPYQGKIVCRIP
Ga0190270_1000013323	3300018469	Soil	MWPIKRFMIRIEAPTWEDFEDVELPRLPLVGETIETKYGTCVVTQTDASPSTAPYQGKIVCRVP
Ga0190270_100122704	3300018469	Soil	MIKIETPDWEDVEDVELTRLPLVGETIETKYGTCLVTETDESSGTVPYAGKIVCRLP
Ga0190270_101016542	3300018469	Soil	MWTIKRFMITIETPEWKDVQDVELPRLPVIGETIETKYGTCLVTQTDASPGNGPYAGKIVCRMP
Ga0190270_104146871	3300018469	Soil	MWTIKRFMITIDTPDWEDFQDIELPRLPVVGETIETKYGTCVVTQTEASPGTAPYAGKIVCRRP
Ga0190270_111228602	3300018469	Soil	MITIQAPTWEDFEDVELPRLPLVGETIETKYGTCLVTQTDSSSDTAPYQGKIVCRIP
Ga0190270_121728111	3300018469	Soil	MWTIQRFLITIETPDWKDVQDVELPRLPEVGATIETKYGTCLVTQTDASPGTGQYAGKIVCRMP
Ga0190271_100387082	3300018481	Soil	MIRIEAPTWEDFEDVELPRLPVVGATIETKYGTCVVTQADASSDSAPYQGKIVCRVP
Ga0190271_109147963	3300018481	Soil	MVTIQAPTWEDFEDVELPRLPVVGETIETKYGTCLVTETDASSDTAPYQGKIVCRIP
Ga0173481_102484912	3300019356	Soil	MWLIKRFMIKVEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGTAPYEGKIV
Ga0193751_12190641	3300019888	Soil	MALSVIMRPLPRYMITIEGTNWKDSQDVELPRLPGEGETIETKYGTCLVTHTDPLPDSQQYSGKILCRFPG
Ga0222622_103686652	3300022756	Groundwater Sediment	MWTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDTSPGTGPYAGKIVCRMP
Ga0207657_111783322	3300025919	Corn Rhizosphere	MMFVIKRFMIRIEAPAWQDVEDVELPRLPSVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207659_107909521	3300025926	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIVAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP
Ga0207687_103003172	3300025927	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP
Ga0207690_105876202	3300025932	Corn Rhizosphere	MMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207709_105184892	3300025935	Miscanthus Rhizosphere	MDGDLPHLHHVPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTATDASSGTAPYQGKIVCRVP
Ga0207691_103563212	3300025940	Miscanthus Rhizosphere	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTGTDASSGTAPYQGKIVCRVP
Ga0207711_119397591	3300025941	Switchgrass Rhizosphere	IRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207640_111389462	3300025981	Corn Rhizosphere	MFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207708_107157631	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	NERQSILSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207708_109117312	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	SCIMWTIKRFMITIETPNWKDFQDMELPRLPDVGETIETKYGTCLVTQTDASPGPGPYAGKIVCRLP
Ga0207676_110557342	3300026095	Switchgrass Rhizosphere	QNERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0207683_106102813	3300026121	Miscanthus Rhizosphere	PAVQSASPCGRSAESRANERQGIQSCMMFVIKRFMIRIEAPAWQDVEDVELPRLPAVGETIETKYGTCVVTETDASFNSAPYEGKIVCRVP
Ga0247828_110053982	3300028587	Soil	MWPIKRFMIRIEAPSWEDFEDVELPRLPVVGETIQTKYGTCLVTQTDASPSTAPYEGKIVCRLP
Ga0247818_113946251	3300028589	Soil	MGYLAMHHVAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0247822_107442792	3300028592	Soil	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307317_102040452	3300028720	Soil	MITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDTSPGTGPYAGKIVCRMP
Ga0307318_102084082	3300028744	Soil	MWTIKRFMVTIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTQTDASPGTGPYAGRIVCRMP
Ga0307320_102354401	3300028771	Soil	MWTIKRFMVTIETPDWEDFQDIELPRLPVVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0307287_101737003	3300028796	Soil	EGRNAEATSSCIMWTIKRFMITIETPAWEDVQDIELSRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP
Ga0307503_101083612	3300028802	Soil	MWTIKRFMITIATPSWEDFQDMELPRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRLP
Ga0307503_101906281	3300028802	Soil	VTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDASPGNGPYAGKIVCRMP
Ga0307503_102205482	3300028802	Soil	MHHVAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307503_108126602	3300028802	Soil	MITIEAPNWKDVQDVELPRLPEIGETIETKYGTCFVTQTDASPGNGPYAGKIVCRMP
Ga0307281_103153932	3300028803	Soil	MWTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDASPGTGPYAGKIVCRMP
Ga0307302_101249543	3300028814	Soil	MWTIKRFMITIETPAWEDVQDIELPRLPEVGETIETKYGTCLVTKTDASPGTAPYAGKIVCRRP
Ga0307310_102841172	3300028824	Soil	MWTIKRFLITIETPDWKDVQDVELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP
Ga0307304_104909082	3300028885	Soil	RFLITIETPDWKDVQDVELLRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP
Ga0247827_104895362	3300028889	Soil	MWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSATAPYQGKIVCRVP
Ga0299907_102891042	3300030006	Soil	MWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP
Ga0307497_100964253	3300031226	Soil	EDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0299914_103176282	3300031228	Soil	MWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPY
Ga0299913_102064435	3300031229	Soil	RPVTAPLPATGPAPCCIMWPIKRFMITIEAASWVDVEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYQGKIVCRMP
Ga0307413_117981531	3300031824	Rhizosphere	CPAASRPGYGGFHRPDIMGLIKRFLIRIEAPSWEDFEHVELPRLPVVGETIETKYGTCVVTETDASSETAPYEGKIVCRMP
Ga0310907_106468212	3300031847	Soil	TWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307409_1007053292	3300031995	Rhizosphere	MWPIKRFMITIQAPTWQDFEDVELPRLPTVGETIETKYGTCLVTQTDASADTAPYQGKIVCRFP
Ga0310890_112042071	3300032075	Soil	IMWPIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0307415_1019047012	3300032126	Rhizosphere	MGLIKRFLIRIEAPSWEDFEHVELPRLPVVGETIETKYGTCVVTETDASSETAPYEGKIVCRMP
Ga0307470_110521231	3300032174	Hardwood Forest Soil	PRLPEVGETIETKYGTCLVTQTDASPGTSPYAGKIVCRLP
Ga0310889_106539552	3300032179	Soil	VAIKRFLIKIEAPTWEDFEDVELPQLPVVGETIETKYGTCLVTDTDASSSTAPYQGKIVCRVP
Ga0247829_108099121	3300033550	Soil	MWPIKRFMITIEAASWVDIEDVELPRLPEVGETIQTKYGTCFVTQTDASPGTGPYEGKIVCRMP
Ga0247829_110846481	3300033550	Soil	APTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGATPYEGKIVCRVP
Ga0247829_117285441	3300033550	Soil	MIRIEAPTWEDFEDVELPRLPAVGETIETKYGTCVVTQTDASFGATPY
Ga0364929_0258226_430_588	3300034149	Sediment	MWTIKRFMITIEAPNWKDVQDVELPRLPEVGETIETKYGTCFVTQTDASPGTG
Ga0364943_0336684_13_186	3300034354	Sediment	MITIETPAWEDVQDIELPRLPEVGETIETKYGTCLVTQTDASPGTGPYAGKIVCRMP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081309

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences