NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F081296

Metagenome Family F081296

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F081296
Family Type Metagenome
Number of Sequences 114
Average Sequence Length 45 residues
Representative Sequence MWQFIMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKEAIPKKKDEK
Number of Associated Samples 88
Number of Associated Scaffolds 114

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 14.91 %
% of genes near scaffold ends (potentially truncated) 16.67 %
% of genes from short scaffolds (< 2000 bps) 63.16 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.860 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(35.088 % of family members)
Environment Ontology (ENVO) Unclassified
(71.930 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.842 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.00%    β-sheet: 0.00%    Coil/Unstructured: 52.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 114 Family Scaffolds
PF05875Ceramidase 50.88
PF04777Evr1_Alr 1.75
PF13920zf-C3HC4_3 1.75
PF03159XRN_N 0.88
PF10544T5orf172 0.88
PF01555N6_N4_Mtase 0.88
PF16903Capsid_N 0.88
PF04193PQ-loop 0.88
PF01370Epimerase 0.88
PF03798TRAM_LAG1_CLN8 0.88
PF05362Lon_C 0.88
PF05794Tcp11 0.88
PF01193RNA_pol_L 0.88
PF13173AAA_14 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 114 Family Scaffolds
COG0202DNA-directed RNA polymerase, alpha subunit/40 kD subunitTranscription [K] 0.88
COG0466ATP-dependent Lon protease, bacterial typePosttranslational modification, protein turnover, chaperones [O] 0.88
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.88
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.88
COG1067Predicted ATP-dependent proteasePosttranslational modification, protein turnover, chaperones [O] 0.88
COG1750Predicted archaeal serine protease, S18 familyGeneral function prediction only [R] 0.88
COG1761DNA-directed RNA polymerase, subunit L/RPAC2Transcription [K] 0.88
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.88
COG3480Predicted secreted protein YlbL, contains PDZ domainSignal transduction mechanisms [T] 0.88


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.86 %
All OrganismsrootAll Organisms6.14 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000256|LP_F_10_SI03_120DRAFT_1011980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED1242340Open in IMG/M
3300001352|JGI20157J14317_10093064Not Available1119Open in IMG/M
3300001683|GBIDBA_10015108Not Available5093Open in IMG/M
3300001962|GOS2239_1033880Not Available1800Open in IMG/M
3300001974|GOS2246_10033301Not Available1271Open in IMG/M
3300003495|JGI26244J51143_1020973Not Available1364Open in IMG/M
3300003495|JGI26244J51143_1048072Not Available741Open in IMG/M
3300005239|Ga0073579_1356064Not Available804Open in IMG/M
3300005239|Ga0073579_1419376Not Available882Open in IMG/M
3300005424|Ga0066826_10085522Not Available1161Open in IMG/M
3300005430|Ga0066849_10030096Not Available2201Open in IMG/M
3300005516|Ga0066831_10035001Not Available1363Open in IMG/M
3300005603|Ga0066853_10138671Not Available821Open in IMG/M
3300005837|Ga0078893_10973588Not Available5392Open in IMG/M
3300006024|Ga0066371_10153834Not Available707Open in IMG/M
3300006024|Ga0066371_10155110Not Available704Open in IMG/M
3300006620|Ga0101444_113282Not Available8191Open in IMG/M
3300007236|Ga0075463_10230866Not Available595Open in IMG/M
3300007271|Ga0104347_102971Not Available4068Open in IMG/M
3300007512|Ga0105016_1018977All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED1246643Open in IMG/M
3300008097|Ga0111541_10551625Not Available510Open in IMG/M
3300009420|Ga0114994_10180504Not Available1425Open in IMG/M
3300009425|Ga0114997_10016169Not Available5160Open in IMG/M
3300009436|Ga0115008_10027930Not Available4518Open in IMG/M
3300009441|Ga0115007_10002801Not Available10658Open in IMG/M
3300009467|Ga0115565_10178709Not Available983Open in IMG/M
3300009507|Ga0115572_10175573Not Available1248Open in IMG/M
3300009512|Ga0115003_10002506Not Available15156Open in IMG/M
3300009512|Ga0115003_10724917Not Available579Open in IMG/M
3300009550|Ga0115013_10521889Not Available779Open in IMG/M
3300009550|Ga0115013_10992493Not Available596Open in IMG/M
3300009593|Ga0115011_10106312All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED1241990Open in IMG/M
3300009593|Ga0115011_10608507Not Available882Open in IMG/M
3300009705|Ga0115000_10024992Not Available4238Open in IMG/M
3300009706|Ga0115002_11043173Not Available559Open in IMG/M
3300009786|Ga0114999_10637642Not Available805Open in IMG/M
3300010151|Ga0098061_1068534Not Available1354Open in IMG/M
3300010883|Ga0133547_10014757Not Available20733Open in IMG/M
3300010883|Ga0133547_10065653Not Available8316Open in IMG/M
3300010883|Ga0133547_10176186Not Available4595Open in IMG/M
3300010883|Ga0133547_10233629Not Available3879Open in IMG/M
3300010883|Ga0133547_10566538Not Available2279Open in IMG/M
3300011013|Ga0114934_10074743All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED1241690Open in IMG/M
3300012928|Ga0163110_10032478Not Available3175Open in IMG/M
3300012928|Ga0163110_10713259Not Available783Open in IMG/M
3300012928|Ga0163110_10839970Not Available724Open in IMG/M
3300012928|Ga0163110_11228450Not Available603Open in IMG/M
3300012936|Ga0163109_10037827Not Available3554Open in IMG/M
3300012936|Ga0163109_10038267Not Available3532Open in IMG/M
3300012952|Ga0163180_11031241Not Available661Open in IMG/M
3300012954|Ga0163111_10101223Not Available2364Open in IMG/M
3300012954|Ga0163111_12085461Not Available572Open in IMG/M
3300017740|Ga0181418_1129462Not Available609Open in IMG/M
3300017768|Ga0187220_1245739Not Available536Open in IMG/M
3300017773|Ga0181386_1078096Not Available1044Open in IMG/M
3300017782|Ga0181380_1125688Not Available881Open in IMG/M
3300020185|Ga0206131_10001874Not Available26361Open in IMG/M
3300020185|Ga0206131_10003477Not Available18084Open in IMG/M
3300020282|Ga0211667_1000656Not Available10358Open in IMG/M
3300020309|Ga0211681_1017098Not Available1266Open in IMG/M
3300020365|Ga0211506_1007554Not Available3199Open in IMG/M
3300020370|Ga0211672_10215243Not Available594Open in IMG/M
3300020391|Ga0211675_10061662Not Available1780Open in IMG/M
3300020394|Ga0211497_10234322Not Available694Open in IMG/M
3300020404|Ga0211659_10303760Not Available702Open in IMG/M
3300020417|Ga0211528_10101507Not Available1168Open in IMG/M
3300020421|Ga0211653_10110473Not Available1220Open in IMG/M
3300020422|Ga0211702_10018016Not Available1909Open in IMG/M
3300020430|Ga0211622_10482363Not Available530Open in IMG/M
3300020431|Ga0211554_10000662Not Available25546Open in IMG/M
3300020431|Ga0211554_10202163Not Available958Open in IMG/M
3300020433|Ga0211565_10298336Not Available702Open in IMG/M
3300020436|Ga0211708_10059125Not Available1479Open in IMG/M
3300020459|Ga0211514_10040223Not Available2428Open in IMG/M
3300020459|Ga0211514_10373970Not Available701Open in IMG/M
3300020466|Ga0211714_10150956Not Available1132Open in IMG/M
3300020472|Ga0211579_10048561Not Available2642Open in IMG/M
3300020472|Ga0211579_10721386All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED124554Open in IMG/M
3300021959|Ga0222716_10498499Not Available685Open in IMG/M
3300022227|Ga0187827_10797365Not Available523Open in IMG/M
(restricted) 3300023210|Ga0233412_10366795Not Available642Open in IMG/M
3300024230|Ga0228638_1000894Not Available12843Open in IMG/M
3300024237|Ga0228653_1044425Not Available1015Open in IMG/M
(restricted) 3300024261|Ga0233439_10000208Not Available96834Open in IMG/M
3300024417|Ga0228650_1016365Not Available2320Open in IMG/M
3300025078|Ga0208668_1092435Not Available530Open in IMG/M
3300025118|Ga0208790_1059858Not Available1177Open in IMG/M
3300025122|Ga0209434_1066026Not Available1085Open in IMG/M
3300025849|Ga0209603_1156270Not Available921Open in IMG/M
3300025876|Ga0209223_10450893Not Available535Open in IMG/M
3300025880|Ga0209534_10048140Not Available2745Open in IMG/M
3300026182|Ga0208275_1005684Not Available2824Open in IMG/M
3300026257|Ga0208407_1045662Not Available1478Open in IMG/M
3300027779|Ga0209709_10007762All Organisms → Viruses8055Open in IMG/M
3300027779|Ga0209709_10012707Not Available5909Open in IMG/M
3300027779|Ga0209709_10045551Not Available2579Open in IMG/M
3300027779|Ga0209709_10113164Not Available1395Open in IMG/M
3300027801|Ga0209091_10000067Not Available99473Open in IMG/M
3300027801|Ga0209091_10076067Not Available1858Open in IMG/M
3300027839|Ga0209403_10445507Not Available668Open in IMG/M
(restricted) 3300027861|Ga0233415_10005661All Organisms → Viruses5048Open in IMG/M
3300027906|Ga0209404_10108669Not Available1650Open in IMG/M
(restricted) 3300027996|Ga0233413_10014467Not Available2936Open in IMG/M
3300028197|Ga0257110_1033090Not Available2289Open in IMG/M
3300028197|Ga0257110_1121254Not Available1076Open in IMG/M
3300031659|Ga0307986_10082763Not Available1590Open in IMG/M
3300031702|Ga0307998_1042431Not Available1836Open in IMG/M
3300031773|Ga0315332_10091101Not Available1963Open in IMG/M
3300031773|Ga0315332_10454463Not Available812Open in IMG/M
3300032006|Ga0310344_11615419Not Available526Open in IMG/M
3300032011|Ga0315316_10022670Not Available4847Open in IMG/M
3300032011|Ga0315316_11486392Not Available533Open in IMG/M
3300032073|Ga0315315_10122891Not Available2419Open in IMG/M
3300032278|Ga0310345_11500319Not Available659Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine35.09%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine17.54%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater7.02%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater4.39%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.51%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.51%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.51%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.63%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.63%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water2.63%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.63%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.63%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.63%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.75%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.75%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.88%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.88%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.88%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.88%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.88%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume0.88%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.88%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000256Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - ample_F_10_SI03_120EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300001962Marine microbial communities from Cocos Island, Costa Rica - GS023EnvironmentalOpen in IMG/M
3300001974Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031EnvironmentalOpen in IMG/M
3300003495Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNAEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005424Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49EnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300005516Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49BEnvironmentalOpen in IMG/M
3300005603Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006024Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_BEnvironmentalOpen in IMG/M
3300006620Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ10 time pointEnvironmentalOpen in IMG/M
3300007236Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007271Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ15 time pointEnvironmentalOpen in IMG/M
3300007512Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300008097Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009467Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009550Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 MetagenomeEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017740Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020282Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)EnvironmentalOpen in IMG/M
3300020309Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)EnvironmentalOpen in IMG/M
3300020365Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)EnvironmentalOpen in IMG/M
3300020370Marine microbial communities from Tara Oceans - TARA_B100001029 (ERX556065-ERR599079)EnvironmentalOpen in IMG/M
3300020391Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)EnvironmentalOpen in IMG/M
3300020394Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020421Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)EnvironmentalOpen in IMG/M
3300020422Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126)EnvironmentalOpen in IMG/M
3300020430Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)EnvironmentalOpen in IMG/M
3300020431Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)EnvironmentalOpen in IMG/M
3300020433Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020459Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)EnvironmentalOpen in IMG/M
3300020466Marine microbial communities from Tara Oceans - TARA_B100001540 (ERX556059-ERR598968)EnvironmentalOpen in IMG/M
3300020472Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024230Seawater microbial communities from Monterey Bay, California, United States - 48DEnvironmentalOpen in IMG/M
3300024237Seawater microbial communities from Monterey Bay, California, United States - 65DEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024417Seawater microbial communities from Monterey Bay, California, United States - 62DEnvironmentalOpen in IMG/M
3300025078Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300026182Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B (SPAdes)EnvironmentalOpen in IMG/M
3300026257Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027839Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300031659Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82EnvironmentalOpen in IMG/M
3300031702Marine microbial communities from David Island wharf, Antarctic Ocean - #37EnvironmentalOpen in IMG/M
3300031773Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915EnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LP_F_10_SI03_120DRAFT_101198033300000256MarineMWQILMGFGAGLYVGTIYDCKPTVTYVSNFIISNIPEEAKPRKK*
JGI20157J14317_1009306423300001352Pelagic MarineMWQFFLGFGTGIYIGTNYDCKPTVKFISECIKNNIPKEALPKEKK*
GBIDBA_1001510843300001683Hydrothermal Vent PlumeMWQFMMGFSIGMYVGTLYDCKPTVKYISDLIQKNIPEEAKPIKKD*
GOS2239_103388043300001962MarineMWQFILGFGAGIYVGTNYDCKPTIKFIQTCIKNNVPDDMVPKKKEEK*
GOS2246_1003330123300001974MarineMWQFILGFGAGIYVGTNYDCKPTISFISTCIKNNIPEDMVPKKKEEK*
JGI26244J51143_102097323300003495MarineMWQLMVGFSMGIYVGTLYDCKPTVTYVSNFIKNNIPEEAKPKKKE*
JGI26244J51143_104807223300003495MarineMGFGAGVYVGTSYDCKPTVSFITNFIKNNVPKEALPKKKDDKK*
Ga0073579_135606423300005239MarineMWQFIMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPRKKDNN*
Ga0073579_141937623300005239MarineMWQFLVGFSAGMYVGTIYDCGPTVKFITTCLKNNIPKEALPKKKDEK*
Ga0066826_1008552233300005424MarineMWQFLMGFGVGIYVGTNYDCAPTIKFINNCLKKNIPEDAIPKKK*
Ga0066849_1003009643300005430MarineMWQLILGFGAGIYVGTNYDCKPTIKFIQTCIKNNVPNDMVPKKKDDEN*
Ga0066831_1003500133300005516MarineMWQFMMGFSAGIYVGTIYDCKPTVEYVTNFLKNNIPEEAKPKKK*
Ga0066853_1013867123300005603MarineMWQFIIGFGVGIYVGGIYDCKPTTDFIIKCIKNVIPKEALPTKK*
Ga0078893_1097358843300005837Marine Surface WaterMWQFLVGFGAGMYVGTIYDCGPTVTFITTCLKNNIPNEALPKKKDEK*
Ga0066371_1015383413300006024MarineMWQFIMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPKKKDEK*
Ga0066371_1015511023300006024MarineMWQFLMGFSAGIYVGTVYDCKPTVEFISKCIKNNIPQDAIPKKKDEK*
Ga0101444_11328253300006620Marine Surface WaterMGFGAGVYVGTVYDCKPTVEFISNCIKNNIPKDAIPKKKEEK*
Ga0075463_1023086623300007236AqueousMWQFMMGFGLGVYVGTIYDCKPTVTFISTCLKNNIPKDALPK
Ga0104347_10297133300007271Marine Surface WaterMWQFLMGFSAGIYVGTVYDCKPTVEFISKCIKNNIPKDAIPKKKDEK*
Ga0105016_101897743300007512MarineMWQFMMGFSLGMYVGTIYDCKPTVVYIKNFLDKTIPEEAKPKKKK*
Ga0111541_1055162523300008097MarineMWQFIMGFGAGMYVGTVYDCKPTVEFISKCIKNNIPKDAIPKKKDNN*
Ga0114994_1018050423300009420MarineMWQLIMGFGMGVYVGTNYDCKPTMIFLSTCIKNNVPKQVIPEKKEDDDN*
Ga0114997_1001616943300009425MarineMWQFLMGFGAGIYVGTSYDCKPTVSFITNFIKTNVPKDALPKKKDEKK*
Ga0115008_1002793063300009436MarineMMGFSVGIFVGTKYDCKPTVEYITKFLDNTIPEEARPKKKE*
Ga0115007_1000280193300009441MarineMWQFLVGFSAGMYVGTIYDCNPTVKFISDCLKDKIPKEAFPKKKDEKK*
Ga0115565_1017870923300009467Pelagic MarineMWQFMMGFSAGIYVGTIYDCKPTVTYITNFLKNNIPEEAKPKKK*
Ga0115572_1017557323300009507Pelagic MarineMWQFLMGFGAGIYVGTKYDCNPTVKFITNCIKNNVPKDALPKKKEEE*
Ga0115003_10002506103300009512MarineMWQFLMGIGVGVYVGTSYDCNPSINFIKECIKNNIPKDALPKKKD*
Ga0115003_1072491723300009512MarineAGVY*GTSYECKPKVSFIKNFKKNNVPKEALPKKKDDKK*
Ga0115013_1052188913300009550MarineMMGFGLGVYVGTKYDCKPTVDYITNFLDKTIPDDARPKKKDE*
Ga0115013_1099249323300009550MarineMGFSAGIYVGTIYDCKPTVTYITNFLKNNIPEEAKPKKK*
Ga0115011_1010631223300009593MarineMWQLLMGFGAGLYVGTIYDCKPTVTYVSNFIINNIPEEAKPRKK*
Ga0115011_1060850713300009593MarineMIGFSAGIYVGTIYDCKPTVEYVTKFLKNNIPEEAKPKKK*
Ga0115000_1002499243300009705MarineMWQFLMGLGVGVYVGTSYDCNPSINFIKECIKNNIPKDALPKKKD*
Ga0115002_1104317323300009706MarineMWQLIMGFGMGVYVGTNYDCKPTMSFIATCIKNNVPKQVIPEIKQDN*
Ga0114999_1063764233300009786MarineMWQFILGFGTGIFVGTSYDCKPTVKYITDCIKNNIPVEALPKKKD*
Ga0098061_106853473300010151MarineMWQFIIGFGVGIYVGGIYDCKPTTDFIIKCIKNVIP
Ga0133547_10014757193300010883MarineMWQFILGFGAGVYLGTNYDCKPSIKFISTCIKNNVPNEVVPKRKEEK*
Ga0133547_1006565383300010883MarineMWQLLMGFGAGMYVGTVYDCNPTVEFISSCIKKNIPKDALPKKKDEKK*
Ga0133547_1017618643300010883MarineLMGFGAGVYVGTSYDCKPTVSFITNFIKNNVPKEALPKKKG*
Ga0133547_1023362953300010883MarineMWQFLLGFGAGIYVGTNYDCKPTVSFISSCIKKNIPKEALPKEKK*
Ga0133547_1056653813300010883MarineMWQFMLGFGAGIYVGTNYDCKPTMSFISTCKKNNVPQDMVPKKKK*
Ga0114934_1007474333300011013Deep SubsurfaceMWQFMMGFGAGLYIGTIYDCKPTVTYVSNFIKNNIPEEAKPKKK*
Ga0163110_1003247843300012928Surface SeawaterMGFSAGIYVGTVYDCKPTVEFISKCIKNNIPKDAIPKKKDEK*
Ga0163110_1071325923300012928Surface SeawaterMGFGVGIYVGTKYDCKPTVDYITKFLDNNIPEEAKPKKK*
Ga0163110_1083997023300012928Surface SeawaterMWQFMMGFGLGVYVGTIYDCKQTVTFISTCLKNNIPKDALPKKKEDN*
Ga0163110_1122845013300012928Surface SeawaterMGFGAGVYVGTVYDCKPTVEFISKCIKNNIPKDAIPKKKEEK*
Ga0163109_1003782723300012936Surface SeawaterMWQFMMGFSMGIYVGTIYDCKPTVTYVSNFLKNNIPEEAKPRKK*
Ga0163109_1003826733300012936Surface SeawaterMWQFLMGFGAGLYVGTIYDCKPTVTYVSNFIINNIPEEAKPKKK*
Ga0163180_1103124113300012952SeawaterMWQFIMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPKKKEEK*
Ga0163111_1010122313300012954Surface SeawaterFGAGVYVGTNYDCKPTIKFIQTCIKNNVPNDMVPKKKEENDDE*
Ga0163111_1208546133300012954Surface SeawaterFGAGVYVGTNYDCKPTIKFIQTCIKNNVPNDMVPKKKEENEDK*
Ga0181418_112946213300017740SeawaterGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPRKKDEK
Ga0187220_124573913300017768SeawaterMWQFMMGFGLGVYVGTKYDCKPTVVYITNFLDKTIPDEAKPKKK
Ga0181386_107809623300017773SeawaterMWQFLVGFSAGMYVGTIYDCGPTVTFITTCLKNNIPKEALPKKKEEN
Ga0181380_112568823300017782SeawaterMWQFLMGFGAGIYVGTKYDCNPTVTFITNCIKNNVPKDALPKKKEDEEKN
Ga0206131_10001874183300020185SeawaterMWQFMMGFSAGIYVGTIYDCKPTVTYITNFLKNNIPEEAKPKKK
Ga0206131_1000347783300020185SeawaterMYMWQFLMGFGAGIYVGTKYDCNPTVKFITNCIKNNVPKDALPKKKEEE
Ga0211667_1000656133300020282MarineMMGFGLGVYVGTIYDCKPTVTFISTCLKNNIPKDALPKKKDEN
Ga0211681_101709843300020309MarineMWQFLLGFGAGIYVGTNYDCKPTVSFISSCIKKNIPKEALPKEKK
Ga0211506_100755423300020365MarineMWQFILGFGAGIYVGTNYDCKPTLAFISTCIKNNVPNDMVPKKKDEK
Ga0211672_1021524323300020370MarineMWQFLMGFGAGLYVGTIYDCKPTVTYVSNFIINNIPEEAKPKKK
Ga0211675_1006166223300020391MarineMYMWQFLMGFGAGIYVGTKYDCKPTVTFITNCIKNNIPKDALPKKKKDEEN
Ga0211497_1023432223300020394MarineMWQFMMGFSMGIYVGTIYDCKPTVTYVSNFLKNNIPEEAKPRKK
Ga0211659_1030376013300020404MarineMGFGAGVYVGTVYDCKPTVEFISNCIKNNIPKDAIPKKKEEK
Ga0211528_1010150723300020417MarineMWQFLMGFSAGIYVGTVYDCKPTVEFISKCIKNNIPQDAIPKKKDEK
Ga0211653_1011047313300020421MarineMWQFILGFGAGIYVGTNYDCKPTISFISTCIKNNVPK
Ga0211702_1001801633300020422MarineMWRELISFGMGVYVGSKYDCNPTITFITTLIKNNIPKDALPIKKDD
Ga0211622_1048236313300020430MarineMGFGLGVYVGTIYDCKPTVTFISTCLKNNIPKDALPKKKDEN
Ga0211554_1000066243300020431MarineMWQLLMGFGAGLYVGTIYDCKPTVTYVSNFIINNIPEEAKPRKK
Ga0211554_1020216323300020431MarineMWQFIMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPRKKDEK
Ga0211565_1029833613300020433MarineLGVYVGTIYDCKPTVTFISTCLKNNIPKDALPKKKDEN
Ga0211708_1005912523300020436MarineMWQFMMGFGVGIYVGTKYDCKPTVDYITKFLDNTIPEEAKPKKK
Ga0211514_1004022323300020459MarineMWQFILGFGAGIYVGTNYDCKPTISFISTCIKNNVPKDMVPKKKDEK
Ga0211514_1037397023300020459MarineMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPKKKNEK
Ga0211714_1015095623300020466MarineMWQFMMGFGLGVYVGTIYDCKPTVTFISTCLKNNIPKDALPKRKDEK
Ga0211579_1004856153300020472MarineMWQFLMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPKKKNEK
Ga0211579_1072138623300020472MarineMWQFMMGFSAGIYVGTIYDCKPTVEYITKFLKNNIPEEAKPKKK
Ga0222716_1049849923300021959Estuarine WaterMWQFMMGFSAGIYVGTIYDCKPTVEYVTKFLKNNIPEEAKPKKK
Ga0187827_1079736513300022227SeawaterMWQFIIGFGVGIYVGGIYDCKPTTDFIIKCIKNVIPKEALPTKK
(restricted) Ga0233412_1036679523300023210SeawaterMWQILMGFGAGLYVGTIYDCKPTVTYVSNFIISNIPEEAKPRKK
Ga0228638_100089463300024230SeawaterMWQFLVGFGAGMYVGTIYDCGPTVTFITTCLKNNIPNEALPKKKDEK
Ga0228653_104442523300024237SeawaterGAGMYVGTIYDCGPTVTFITTCLKNNIPNEALPKKKDEK
(restricted) Ga0233439_10000208133300024261SeawaterMWQLMVGFSMGIYVGTLYDCKPTVTYVSNFIKNNIPEEAKPKKKE
Ga0228650_101636513300024417SeawaterMWQFLVGFGAGMYVGTIYDCGPTVTFITTCLKNNIPNEALP
Ga0208668_109243523300025078MarineFGVGIYVGGIYDCKPTTDFIIKCIKNVIPKEALPTKK
Ga0208790_105985873300025118MarineMWQFIIGFGVGIYVGGIYDCKPTTDFIIKCIKNVIPKE
Ga0209434_106602623300025122MarineKILIYMWQFIIGFGVGIYVGGIYDCKPTTDFIIKCIKNVIPKKALPTKK
Ga0209603_115627013300025849Pelagic MarineMWQFLMGFGAGIYVGTKYDCNPTVKFITNCIKNNVPKDALPKKKEEE
Ga0209223_1045089323300025876Pelagic MarineGTNYDCKPTIKFIQTCIKNNVPNDMVPKKQKETDDK
Ga0209534_1004814033300025880Pelagic MarineMWQFFLGFGTGIYIGTNYDCKPTVKFISECIKNNIPKEALPKEKK
Ga0208275_100568423300026182MarineMWQFLMGFGVGIYVGTNYDCAPTIKFINNCLKKNIPEDAIPKKK
Ga0208407_104566233300026257MarineMWQLILGFGAGIYVGTNYDCKPTIKFIQTCIKNNVPNDMVPKKKDDEN
Ga0209709_1000776293300027779MarineFLMGFGAGVYVGTSYDCKPTVSFITNFIKNNVPKEALPKKKDDKK
Ga0209709_1001270743300027779MarineMWQFILGFGAGVYLGTNYDCKPSIKFISTCIKNNVPNEVVPKRKEEK
Ga0209709_1004555133300027779MarineMWQFLMGFGAGIYVGTSYDCKPTVSFITNFIKTNVPKDALPKKKDEKK
Ga0209709_1011316433300027779MarineMILGFGAGVYVGTNYDCKPTMKFISLCIKNNVPKDIVPKKKEEKTEKK
Ga0209091_10000067303300027801MarineMWQLIMGFGMGVYVGTNYDCKPTMIFLSTCIKNNVPKQVIPEKKEDDDN
Ga0209091_1007606733300027801MarineMWQFLMGLGVGVYVGTSYDCNPSINFIKECIKNNIPKDALPKKKD
Ga0209403_1044550713300027839MarineMLCGFGAGVYVGTIYDCKPTFKFVKECIKNFVPDDALPKKKDGS
(restricted) Ga0233415_1000566133300027861SeawaterMWQFLMGFGMGVYVGTNYDCKPTMTFISTCIKNNVPQQVIPERKRDDDN
Ga0209404_1010866923300027906MarineMWQFIMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPKKKDEK
(restricted) Ga0233413_1001446713300027996SeawaterMWQFLVGFSAGMYVGTIYDCGPTVTFITTCLKNNIPKEALPKKKDEK
Ga0257110_103309023300028197MarineMWQFMMGFSAGIYVGTIYDCKPTVEYVKKFIKNNIPDEAKPKKK
Ga0257110_112125423300028197MarineMWQLLMGFGAGVYVGTVYDCKPTVEFISSCIKNNIPKDALPKKKDEK
Ga0307986_1008276323300031659MarineMWQFVLGFGTGVYVGSMYDCNPTVKFISECIKKNIPKEALPKKKEEKK
Ga0307998_104243143300031702MarineMWQFILGFGTGVYVGSLYDCNPTVKFIADCIKKNIPKEALPKKKDDKNN
Ga0315332_1009110133300031773SeawaterMWQFLMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPKRKDEK
Ga0315332_1045446313300031773SeawaterLVGFGAGMYVGTIYDCGPTVTFITTCLKNNIPNEALPKKKDEK
Ga0310344_1161541923300032006SeawaterMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKDAIPKKKEEK
Ga0315316_1002267073300032011SeawaterMGFGAGVYVGTSYDCKPTVSFITNFIKNNVPIEALPKKKDNKK
Ga0315316_1148639223300032011SeawaterMWQFIMGFGAGMYVGTIYDCKPTVEFISNCIKNNIPKEAIPKKKDEK
Ga0315315_1012289123300032073SeawaterMWQLMIGFGLGIYVGTKYDCKPTVDYITIFLDKTIPEEAKPKKK
Ga0310345_1150031923300032278SeawaterMWQFLMGFGVGVYVGTSYDCKPTIAFISNVIKTSIPKD


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