Metagenome Family F081145

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081145
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	61 residues
Representative Sequence	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN
Number of Associated Samples	67
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.22 %
% of genes near scaffold ends (potentially truncated)	25.44 %
% of genes from short scaffolds (< 2000 bps)	77.19 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.965 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (52.632 % of family members)
Environment Ontology (ENVO)	Unclassified (53.509 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.649 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.89% β-sheet: 0.00% Coil/Unstructured: 51.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF09834	DUF2061	28.95
PF01471	PG_binding_1	15.79
PF13432	TPR_16	1.75
PF00494	SQS_PSY	1.75
PF08238	Sel1	0.88
PF00881	Nitroreductase	0.88
PF08240	ADH_N	0.88
PF00486	Trans_reg_C	0.88
PF13561	adh_short_C2	0.88
PF00296	Bac_luciferase	0.88
PF13884	Peptidase_S74	0.88
PF06762	LMF1	0.88
PF01527	HTH_Tnp_1	0.88
PF09917	DUF2147	0.88
PF13358	DDE_3	0.88
PF03734	YkuD	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1562	Phytoene/squalene synthetase	Lipid transport and metabolism [I]	1.75
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.96 %
Unclassified	root	N/A	14.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.96 %
Unclassified	root	N/A	14.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.96 %
Unclassified	root	N/A	14.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.25 %
Unclassified	root	N/A	14.04 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.02 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.49 %
Unclassified	root	N/A	14.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.02 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	33.33 %
Unclassified	root	N/A	14.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.02 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.33 %
Unclassified	root	N/A	14.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.02 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.63 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.33 %
Unclassified	root	N/A	14.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.02 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.88 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.33 %
Unclassified	root	N/A	14.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.02 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.88 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.33 %
Unclassified	root	N/A	14.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.02 %
Bradyrhizobium sp. WSM471	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM471	0.88 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	0.88 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_101790986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1917	Open in IMG/M
3300002245\|JGIcombinedJ26739_100424767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1207	Open in IMG/M
3300002914\|JGI25617J43924_10081253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1176	Open in IMG/M
3300002914\|JGI25617J43924_10205998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300005176\|Ga0066679_10025764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3181	Open in IMG/M
3300005177\|Ga0066690_10800968	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300005180\|Ga0066685_10064754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2383	Open in IMG/M
3300005181\|Ga0066678_10760083	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300005332\|Ga0066388_100252944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2401	Open in IMG/M
3300005445\|Ga0070708_100055268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3530	Open in IMG/M
3300005445\|Ga0070708_100311405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1483	Open in IMG/M
3300005467\|Ga0070706_100506351	Not Available	1123	Open in IMG/M
3300005471\|Ga0070698_100294574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1554	Open in IMG/M
3300005552\|Ga0066701_10063324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2073	Open in IMG/M
3300005552\|Ga0066701_10216891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM471	1177	Open in IMG/M
3300005552\|Ga0066701_10218128	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300005552\|Ga0066701_10923385	Not Available	517	Open in IMG/M
3300005553\|Ga0066695_10601017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300005574\|Ga0066694_10330527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300005576\|Ga0066708_10200288	Not Available	1252	Open in IMG/M
3300006034\|Ga0066656_10631990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300006046\|Ga0066652_100993016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300006794\|Ga0066658_10067722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1588	Open in IMG/M
3300006796\|Ga0066665_10081817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2323	Open in IMG/M
3300006796\|Ga0066665_10349849	All Organisms → cellular organisms → Bacteria → Proteobacteria	1205	Open in IMG/M
3300006796\|Ga0066665_10497296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	999	Open in IMG/M
3300006796\|Ga0066665_11591088	Not Available	514	Open in IMG/M
3300006797\|Ga0066659_10583151	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300006854\|Ga0075425_101872885	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300006871\|Ga0075434_102121839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300009012\|Ga0066710_100644595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1611	Open in IMG/M
3300009012\|Ga0066710_101481564	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300009038\|Ga0099829_10071866	All Organisms → cellular organisms → Bacteria	2626	Open in IMG/M
3300009038\|Ga0099829_10078543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2520	Open in IMG/M
3300009038\|Ga0099829_10267929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1396	Open in IMG/M
3300009088\|Ga0099830_10003188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8937	Open in IMG/M
3300009088\|Ga0099830_10172553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1677	Open in IMG/M
3300009089\|Ga0099828_11144026	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300009090\|Ga0099827_10032495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3778	Open in IMG/M
3300009090\|Ga0099827_10278146	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300009090\|Ga0099827_10314980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1326	Open in IMG/M
3300009090\|Ga0099827_10624503	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300009090\|Ga0099827_11010556	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300009137\|Ga0066709_101486190	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300009137\|Ga0066709_101598467	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300009137\|Ga0066709_102739115	Not Available	656	Open in IMG/M
3300009143\|Ga0099792_10205442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1123	Open in IMG/M
3300010043\|Ga0126380_11841733	Not Available	548	Open in IMG/M
3300010048\|Ga0126373_10613119	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300010359\|Ga0126376_12261460	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300010361\|Ga0126378_10098051	Not Available	2886	Open in IMG/M
3300012096\|Ga0137389_11299062	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300012149\|Ga0153941_1000006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	236904	Open in IMG/M
3300012198\|Ga0137364_10024633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3761	Open in IMG/M
3300012198\|Ga0137364_10492854	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300012199\|Ga0137383_10045136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3137	Open in IMG/M
3300012199\|Ga0137383_10065105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2620	Open in IMG/M
3300012199\|Ga0137383_10164168	Not Available	1627	Open in IMG/M
3300012199\|Ga0137383_11158924	Not Available	557	Open in IMG/M
3300012201\|Ga0137365_11050030	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300012204\|Ga0137374_10182763	All Organisms → cellular organisms → Bacteria	1828	Open in IMG/M
3300012204\|Ga0137374_10306455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1300	Open in IMG/M
3300012204\|Ga0137374_10371159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1147	Open in IMG/M
3300012205\|Ga0137362_10672835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	890	Open in IMG/M
3300012205\|Ga0137362_11046740	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012205\|Ga0137362_11507378	Not Available	559	Open in IMG/M
3300012206\|Ga0137380_10100288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2646	Open in IMG/M
3300012206\|Ga0137380_10550827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300012206\|Ga0137380_11392302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300012207\|Ga0137381_10664887	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012207\|Ga0137381_11019825	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300012207\|Ga0137381_11080392	Not Available	691	Open in IMG/M
3300012209\|Ga0137379_10676697	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300012209\|Ga0137379_10798045	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300012209\|Ga0137379_11112193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300012210\|Ga0137378_10222571	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300012210\|Ga0137378_11022782	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300012285\|Ga0137370_10158036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1314	Open in IMG/M
3300012349\|Ga0137387_10344888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1078	Open in IMG/M
3300012349\|Ga0137387_11040695	Not Available	586	Open in IMG/M
3300012350\|Ga0137372_10185390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1676	Open in IMG/M
3300012350\|Ga0137372_10257118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1371	Open in IMG/M
3300012350\|Ga0137372_10788866	Not Available	682	Open in IMG/M
3300012351\|Ga0137386_11184029	Not Available	535	Open in IMG/M
3300012354\|Ga0137366_10066638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2745	Open in IMG/M
3300012354\|Ga0137366_10129366	All Organisms → cellular organisms → Bacteria → Proteobacteria	1906	Open in IMG/M
3300012355\|Ga0137369_10367455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1046	Open in IMG/M
3300012358\|Ga0137368_10586426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300012359\|Ga0137385_10491681	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300012363\|Ga0137390_10563655	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300012917\|Ga0137395_10155435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1568	Open in IMG/M
3300012917\|Ga0137395_10185004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1444	Open in IMG/M
3300017654\|Ga0134069_1319837	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300018433\|Ga0066667_10009721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4549	Open in IMG/M
3300021560\|Ga0126371_11548516	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300025910\|Ga0207684_10416856	Not Available	1154	Open in IMG/M
3300025910\|Ga0207684_11656201	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300026318\|Ga0209471_1096159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1287	Open in IMG/M
3300026325\|Ga0209152_10038796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1647	Open in IMG/M
3300026547\|Ga0209156_10185595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	997	Open in IMG/M
3300026551\|Ga0209648_10008615	All Organisms → cellular organisms → Bacteria	8813	Open in IMG/M
3300026551\|Ga0209648_10094010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2472	Open in IMG/M
3300026551\|Ga0209648_10121914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2101	Open in IMG/M
3300026551\|Ga0209648_10320885	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300027748\|Ga0209689_1387250	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300027846\|Ga0209180_10005280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6523	Open in IMG/M
3300027846\|Ga0209180_10366171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300027862\|Ga0209701_10009044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6489	Open in IMG/M
3300027862\|Ga0209701_10026622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3761	Open in IMG/M
3300027862\|Ga0209701_10274899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	976	Open in IMG/M
3300027882\|Ga0209590_10312704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1010	Open in IMG/M
3300027882\|Ga0209590_10738687	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300028047\|Ga0209526_10020041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4660	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.37%
Host-Associated	Host-Associated	2.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.37%
Plants	Host-Associated → Plants	1.75%
Fungi	Host-Associated → Fungi	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.75%
Mycelium	Host-Associated → Fungi → Mycelium	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.47%
Loam	Environmental → Terrestrial → Soil → Loam	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	31.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	52.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.05%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012149	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ025 MetaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1017909862	3300000956	Soil	MSGLIDFQSDATECLRMAERAESQEERAVLVDLARAWVLLGKQLDHSHQENNSEPLKSSPIN*
JGIcombinedJ26739_1004247673	3300002245	Forest Soil	MSNVINFQGDAVECLRMAERAKGSDEKSVLVDLARAWVLLGEQMRHLHDETASDLPKPSPLN*
JGI25617J43924_100812532	3300002914	Grasslands Soil	MSNVINFQGDAVACLRMAEQAKGLEEKSVLVALARAWVLLGEQLRHVHDDNSDLPKPNPLN*
JGI25617J43924_102059982	3300002914	Grasslands Soil	SPIGFECDAMECMRMAERAQGDADRAILVDLARAWLLLGEQLKNLGEENNSDLAMRVN*
Ga0066679_100257643	3300005176	Soil	MSDVINFQGDAMECLRMAERAKGLEEKSVLVALARAWVLLGEQLRHLRDDTNSDLPKPSHLN*
Ga0066690_108009681	3300005177	Soil	MSNVIDFQSDAMECLRMAERANVVEEKAALVALARAWMLLSEQLKRAHDGSGSEPSGASALN*
Ga0066685_100647542	3300005180	Soil	MRNLINFQGDAMECLRMAERAKGQEERSVLVDLARAWVLLGEQLKHLHDENVPDLSKPSPLN*
Ga0066678_107600832	3300005181	Soil	MSSPINFQSDAMECLRMAEQAKVQDERAILVDLARAWVLLGEQLNQLDPEKNSDLPSPLN
Ga0066388_1002529443	3300005332	Tropical Forest Soil	MSVLDFQNDAMECLRMAERTESQEERAFLVDLARAWVLLGEQFNHSHLENDSAPPTQVL*
Ga0070708_1000552682	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQMSGLIDFQSDAMECLRMAEGAESQEERAALVDLARAWVLLGEQFNHLHQENNSDPSKPSPLN*
Ga0070708_1003114052	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSSPINFQSDAMECLRMAEQAKVQDERALLVDLARAWILLGEQLNHWNQENNSDLPKPNPLN*
Ga0070706_1005063512	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSGLIDFQSDAMECLRMAEGAESQEERAALVDLARAWVLLGEQFNHLHQENNSDPSKPSPLN*
Ga0070698_1002945743	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSSPINFQSDAMECLRMAEQAKGQEERVVPVDLARAWVLLGKQLNHWNQENNSDLPKPSPLN*
Ga0066701_100633243	3300005552	Soil	MQMSGLIDFQSDATECLRMAERAESQQERAVLVDLARALVLLGKQLNHSHQENNSEPLKPSPIN*
Ga0066701_102168911	3300005552	Soil	FQSDATECLRMAEHAKGQEEKAVLVGLARAWVLLGEQLKHLDHENEPDLPKVSPVS*
Ga0066701_102181282	3300005552	Soil	MSSPINFQSDAMECMRMAEQAEGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN*
Ga0066701_109233851	3300005552	Soil	MSSPTHFQTDATECLRMAERATGQDERAVLVDLARAWLLLGEQVQHLHEGSNSDLPSRAP
Ga0066695_106010171	3300005553	Soil	MSGLIDFQSDATECLRMAERAESQEERAVLVDLARALVLLGKQLNHSHQENNSE
Ga0066694_103305272	3300005574	Soil	MRNLINFQGDAMECLRMAERAKVQEERSVLVDLARAWVLLGEQLKHLHDENVPDLSKPSPLN*
Ga0066708_102002881	3300005576	Soil	MSSVIDFQSDAIECLRMAERASGPEEKSVLQCLARAWMLLSDQLRDLQEDGAPEAAVPNALN*
Ga0066656_106319902	3300006034	Soil	MECLRMAERAKGQEERSVLVDLARAWVLLGEQLKHLHDENVPDLSKPSPLN*
Ga0066652_1009930162	3300006046	Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQLRYLHDDTNSDLPEPSPLN*
Ga0066658_100677222	3300006794	Soil	MSSIINFQSDAMECLRMAERAKGQEERSILVDLARAWVLLGEQLKHLHDDNDTDPPMSRSLN*
Ga0066665_100818174	3300006796	Soil	MECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNQLDPEKNSDLPSPLN*
Ga0066665_103498492	3300006796	Soil	MSSQINFQSDATECLRMAEHAKGQEEKAVLVGLARAWVLLGEQLKHLDHENEPDLPKVSPVS*
Ga0066665_104972962	3300006796	Soil	MSTLLDFQSDAMECLRMAERAESQEERGVLVDLARAWVLLGEQLNHSHQENNSEPLKPSPIN*
Ga0066665_115910881	3300006796	Soil	MSGQIDFQNDAAECLLMAGRAENKEERALLVDLARAWVLLGEQLKHAHQEGKPDVPKPSPLN*
Ga0066659_105831511	3300006797	Soil	MSSPINFQSDAMECLRMAEQAEGQEERAVLVDLARAWVLLGEQLNHWNQENNSDL
Ga0075425_1018728851	3300006854	Populus Rhizosphere	MSDVINFQGDAMECLRMAERAKGREEKSVLMDLARAWVLLGEQLRHLHDGANAD
Ga0075434_1021218392	3300006871	Populus Rhizosphere	DVINFQGDAMECLRMAERAKGREEKSVLMDLARAWVLLGEQLRHLHDGANADSPKPKSLN
Ga0066710_1006445952	3300009012	Grasslands Soil	MSSQINFQSDATECLRMAEHAKGQEEKAVLVGLARAWVLLGEQLKHLDHENEPDLPKVSPVS
Ga0066710_1014815641	3300009012	Grasslands Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNQLDPEKNSDLPSPLN
Ga0099829_100718661	3300009038	Vadose Zone Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQFRDLHDDTNSDLPRPSPLN*
Ga0099829_100785433	3300009038	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN*
Ga0099829_102679292	3300009038	Vadose Zone Soil	MSNVINFQGDAMACLRMAEQAKGLEEKSVLVALARAWVLLGEQLRHLHDDNSDLPKPSPLN*
Ga0099830_100031882	3300009088	Vadose Zone Soil	MSNVINFQSDAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFRYRHDDTNSDLPEPSPLN*
Ga0099830_101725531	3300009088	Vadose Zone Soil	MSNVINFQGDAMACLRMAEQAKGLEEKSVLVALARAWVLLGEQLRHVRDDNSDLPKPSPLN*
Ga0099828_111440261	3300009089	Vadose Zone Soil	MSNVINFQGDAMACLRMAEQAKELEEKSVLVALARAWVLLGEQLRHVHDDNSDLPKPNPLN*
Ga0099827_100324952	3300009090	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKGQDERALLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN*
Ga0099827_102781462	3300009090	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAEGQEERAVLVDLARAWVLLGEQLNHWNQENNSDPPKLSSTTSLHAR*
Ga0099827_103149802	3300009090	Vadose Zone Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQFRDLHDDTNSDLPEPSPLN*
Ga0099827_106245032	3300009090	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQEDNSDLPKPSPLN*
Ga0099827_110105561	3300009090	Vadose Zone Soil	MSNVINFQGDAMECLRMAERAKGLEEKSVLVALARAWVLLGEQLRHLHTDTNSDLPKPSPLN*
Ga0066709_1014861902	3300009137	Grasslands Soil	MSSLIDFQSDAMECLRMAEREKGQEERAVLVDLARAWVLLGEQLNHLQKENNSHPPELSPLC*
Ga0066709_1015984671	3300009137	Grasslands Soil	MSSPINFQSDAMECLRMAEQAEGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN*
Ga0066709_1027391151	3300009137	Grasslands Soil	IDCQSDAKECLRMAERAESQEERAVLVDLARALVLLGKQLNHSHQENNSEPLKPSPIN*
Ga0099792_102054421	3300009143	Vadose Zone Soil	SNVINFQSDAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFGDLHDDTNSDLPEPSPLN*
Ga0126380_118417332	3300010043	Tropical Forest Soil	DAMECLRMAERTESQEERAFLVDLARAWVLLGEQFNHSHLENDSAPPTQVL*
Ga0126373_106131191	3300010048	Tropical Forest Soil	MPMSVLDFQNDAMECLRMAERTESQEERAFLVDLARAWVLLGEQFNHSHLENDSAPPTQVL*
Ga0126376_122614601	3300010359	Tropical Forest Soil	MSVLDFQSDAMECLRMAERAESQEESALLVDLARAWVLLGEQFNHSQLENDSASPTQVL*
Ga0126378_100980512	3300010361	Tropical Forest Soil	MSVLDFQNDEMECLRMAERTESQEERAFLVDLARAWVLLGEQFNHSHLENDSAPPTQVL*
Ga0137389_112990622	3300012096	Vadose Zone Soil	MSKVINFQGDAMACLRMAEQAKGLEEKSVLVALARAWVLLGEQLRHVRDDNSDLPKPSPLN*
Ga0153941_100000675	3300012149	Attine Ant Fungus Gardens	MSNVINFQGDAMECLRMAERAKGPEEKSVLVALARAWVLLGEQLRHLQDRANSDLPKPSPMN*
Ga0137364_100246336	3300012198	Vadose Zone Soil	MSSPINFQSVAMECMRMAEQAEGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN*
Ga0137364_104928542	3300012198	Vadose Zone Soil	MSRPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWIQENSSDLPKPSPLN*
Ga0137383_100451362	3300012199	Vadose Zone Soil	MSSPIDFQGDAAQCLRMAERAIDQEERAILVDLARAWIQLAEQLNQLGREDNSKSSKVNLVN*
Ga0137383_100651052	3300012199	Vadose Zone Soil	MSNVINFQGDAIECLRMAERAKGPEEKSVLVDLARAWVLLGEQLKHLHDANGSDLPKPSPVN*
Ga0137383_101641683	3300012199	Vadose Zone Soil	MSSPTHYQTDATECLRMAERATGQDERAVLVDLARAWLLLGEQVQHLHEGSNSDLPSRAP
Ga0137383_111589242	3300012199	Vadose Zone Soil	MQMSGLIDFQNDATECLRMAEHAKGQEEKAVLVGLARAWVLLGEQLKHLDHENEPDLPKVSPVS*
Ga0137365_110500302	3300012201	Vadose Zone Soil	MSRPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENSSDL
Ga0137374_101827631	3300012204	Vadose Zone Soil	MSRPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENSSDLPKPSPLN*
Ga0137374_103064551	3300012204	Vadose Zone Soil	MQMSGLIDFQSDATECLRMAERAESQEERAVLVDLARAWVLLGKQLNDSHQENNSEPLKPSSIN*
Ga0137374_103711592	3300012204	Vadose Zone Soil	MSSQINFQSDATECLRMAEHAKGQEEKAVLVGLARAWVLLGEQLKHLDHEHEADLPKVSPVS*
Ga0137362_106728352	3300012205	Vadose Zone Soil	MSNVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQFRDLHDDTNSDLPEPSPLN*
Ga0137362_110467401	3300012205	Vadose Zone Soil	GGSKRAGLLLETKMSSPINFQSDAMECLRMAEQAKGQEERAILVDLARAWVLLGEQLNQLDPEKNSDLPSPLN*
Ga0137362_115073781	3300012205	Vadose Zone Soil	MSSPIVFECDAMECMRMAERAQGDADRAILVDLARAWLLLGEQLKNLGEENNSDLAMRVN
Ga0137380_101002883	3300012206	Vadose Zone Soil	MQMSGLIDFQSDATECLRMAERAESQEERAVLVDLARAWVLLGKQLNHSHQENNSEPLKPSSIN*
Ga0137380_105508272	3300012206	Vadose Zone Soil	EGGSKRAGLLPETKMSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGQQLNQLDPEKNSDLPSPLN*
Ga0137380_113923022	3300012206	Vadose Zone Soil	DAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFGDLHDDTNSDLPEPSPLN*
Ga0137380_117453622	3300012206	Vadose Zone Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFGDLHDD
Ga0137381_106648872	3300012207	Vadose Zone Soil	MSSLIDFQSDAMECLRMAEREKGQEERAVLVDLARAWVLLGEQLNHLQQENNSHPPKPSPLC*
Ga0137381_110198251	3300012207	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQSNHWNQENNSDLPKPSPLN*
Ga0137381_110803921	3300012207	Vadose Zone Soil	MQMSGLIDFQNDATECLRMAERAESQEERAVLVDLARAWVLLGKQLNHSHQENNSEPLKPSSIN*
Ga0137379_106766971	3300012209	Vadose Zone Soil	MSRPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN*
Ga0137379_107980452	3300012209	Vadose Zone Soil	LLETKMSSPINFQSDAMECLRMAEQAKVQDERAILVDLARAWVLLGEQLNQLDPEKNSDLPSPLN*
Ga0137379_111121931	3300012209	Vadose Zone Soil	AMECLRMAERAKGPEEKSVLVALARAWVLLGEQLRHLHTDTNSDLPKPSPLN*
Ga0137378_102225712	3300012210	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLSEQLNHWNQENNSDLPKPSPLN*
Ga0137378_110227821	3300012210	Vadose Zone Soil	MRNVINFQGDAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFGDLHDDTNSDLPEPSPLN*
Ga0137370_101580361	3300012285	Vadose Zone Soil	KRAGPLLETKMSSPINFQSDAMECLRMAEQAKVQDERALLVDLARAWVLLGEQLNQLDPEKNSDLPSPLN*
Ga0137387_103448881	3300012349	Vadose Zone Soil	MSNVINFQGDAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFGDLHDDTNSDLPEPSPLN*
Ga0137387_110406951	3300012349	Vadose Zone Soil	QSDATKCLRMAERAESQEERAVLVDLARALVLLGKQLNHSHQENNSEPLKPSPIN*
Ga0137372_101853901	3300012350	Vadose Zone Soil	MRNVINFQGDAMECLRMAEGAKGVEEKTVLVALARAWVLLGEQFGDLHDDTNSDLPEPSPLN*
Ga0137372_102571181	3300012350	Vadose Zone Soil	MSSPINFQGDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHLNQENAPDLPKPSLLN*
Ga0137372_107888662	3300012350	Vadose Zone Soil	MSGQIDFQNDAAECLLMAERAENKEERALLVDLARAWVLLGEQLKHAHQEGKPDVPKP
Ga0137386_111840292	3300012351	Vadose Zone Soil	STGAMQMSGLIDFQNDATECLRMAERAESQEERAVLVDLARAWVLLGKQLNHSHQENNSEPLKPSSIN*
Ga0137366_100666385	3300012354	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKVQDERALLVDLARAWVLLGEQLNQLDPEKNSDLPSPLN
Ga0137366_101293663	3300012354	Vadose Zone Soil	MQMSGLIDFQSDATECLRMAERAESQEERTVLVDLARAWVLLGKQLNHSHQENNSDPPKPSPINY*
Ga0137369_103674551	3300012355	Vadose Zone Soil	TGVTQMSSLLDFQSDAVECLRMAERAESQEERSVLVDLARAWVLLGEQLNHSHQENNSDPPQPRPIN*
Ga0137368_105864261	3300012358	Vadose Zone Soil	INFQSDATECLRMAEHAKGQEEKAVLVGLARAWVLLGEQLKHLDHEHEADLPKVSPVS*
Ga0137385_104916811	3300012359	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENNSDL
Ga0137390_105636552	3300012363	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLP
Ga0137395_101554351	3300012917	Vadose Zone Soil	REGGSKRAGLLLETKMSSPINFQSDAMECLRMAEQAKGQDERALLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN*
Ga0137395_101850042	3300012917	Vadose Zone Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFGDLHDDTNSDLPEPSPLN*
Ga0134069_13198371	3300017654	Grasslands Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQLRYLHDDTNSDLPEPSPLN
Ga0066667_100097214	3300018433	Grasslands Soil	MSNVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQLRYLHDDTNSDLPEPSPLN
Ga0126371_115485161	3300021560	Tropical Forest Soil	DAMECLRMAEQTESQEERAFLVDLARAWVLLGEQFNHSHLENDSAPPTQVL
Ga0207684_104168562	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MQMSGLIDFQSDAMECLRMAEGAESQEERAALVDLARAWVLLGEQFNHLHQENNSDPSKPSPLN
Ga0207684_116562011	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RAGLLLETKMSSPINFQSDAMECLRMAEQAKVQDERALLVDLARAWILLGEQLNHWNQENNSDLPKPNPLN
Ga0209471_10961591	3300026318	Soil	MSDVINFQGDAMECLRMAERAKGLEEKSVLVALARAWVLLGEQLRHLRDDTNSDLPKPSHLN
Ga0209152_100387962	3300026325	Soil	MSSIINFQSDAMECLRMAERAKGQEERSILVDLARAWVLLGEQLKHLHDDNDTDPPMSRSLN
Ga0209156_101855952	3300026547	Soil	MRNLINFQGDAMECLRMAERAKGQEERSVLVDLARAWVLLGEQLKHLHDENVPDLSKPSPLN
Ga0209648_100086154	3300026551	Grasslands Soil	MSSPIGFECDAMECMRMAERAQGDADRAILVDLARAWLLLGEQLKNLGEENNSDLAMRVN
Ga0209648_100940103	3300026551	Grasslands Soil	MSSPINFQSDAMECLRMAEQAKGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN
Ga0209648_101219142	3300026551	Grasslands Soil	MSNVINFQGDAVACLRMAEQAKGLEEKSVLVALARAWVLLGEQLRHVHDDNSDLPKPNPL
Ga0209648_103208852	3300026551	Grasslands Soil	MSSPINFQSDAMECLRMAEQAKGQDERALLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN
Ga0209689_13872501	3300027748	Soil	MSNVINFQGDAMECLRMAERATGQDERAVLVDLARAWLLLGEQVQHLHEGSNSDLPSRAP
Ga0209180_100052804	3300027846	Vadose Zone Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQFRDLHDDTNSDLPRPSPLN
Ga0209180_103661712	3300027846	Vadose Zone Soil	MSSPIGFECDAMECMRMAERAQGDADRAIPVDLARAWLLLGEQLKNLGEENNSDLAMRVN
Ga0209701_100090445	3300027862	Vadose Zone Soil	MSNVINFQSDAMECLRMAERAKGVEEKTVLVALARAWVLLGEQFRYRHDDTNSDLPEPSPLN
Ga0209701_100266223	3300027862	Vadose Zone Soil	MSSPTHFQTDATECLRMAERATGQDERAVLVDLARAWLLLGEQVQHLHQGSNSDLPSRAP
Ga0209701_102748991	3300027862	Vadose Zone Soil	MSNVINFQGDAMACLRMAEQAKGLEEKSVLVALARAWVLLGEQLRHVRDDNSDLPKPSPL
Ga0209590_103127042	3300027882	Vadose Zone Soil	MSDVINFQGDAMECLRMAERAKGVEEKTVLVGLARAWVLLGEQFRDLHDDTNSDLPEPSPLN
Ga0209590_107386871	3300027882	Vadose Zone Soil	MSSPINFQSDAMECLRMAEQAEGQEERAVLVDLARAWVLLGEQLNHWNQENNSDLPKPSPLN
Ga0209526_100200413	3300028047	Forest Soil	MSNVINFQGDAVECLRMAERAKGSDEKSVLVDLARAWVLLGEQMRHLHDETASDLPKPSPLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081145

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences