Metagenome / Metatranscriptome Family F081142

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081142
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	59 residues
Representative Sequence	MDPSDLRADLAERLANDRPIDAETFNAACFMLSRALENLEFSVPEAAPLVRRLLRVAG
Number of Associated Samples	103
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.42 %
% of genes near scaffold ends (potentially truncated)	96.49 %
% of genes from short scaffolds (< 2000 bps)	86.84 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.123 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (28.947 % of family members)
Environment Ontology (ENVO)	Unclassified (43.860 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.035 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.16% β-sheet: 0.00% Coil/Unstructured: 48.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF03449	GreA_GreB_N	79.82
PF00501	AMP-binding	16.67
PF10415	FumaraseC_C	0.88
PF01545	Cation_efflux	0.88
PF13183	Fer4_8	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	79.82
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.88
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.88
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	65.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	57.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.39 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	57.02 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.39 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.88 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	57.02 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.39 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.88 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	57.02 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.39 %
Chromobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group	0.88 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	57.02 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.39 %
Chromobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium	0.88 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918006\|ConsensusfromContig11602	All Organisms → cellular organisms → Bacteria	2566	Open in IMG/M
3300001661\|JGI12053J15887_10297793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	789	Open in IMG/M
3300002245\|JGIcombinedJ26739_100159638	All Organisms → cellular organisms → Bacteria	2131	Open in IMG/M
3300002245\|JGIcombinedJ26739_101766909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	519	Open in IMG/M
3300002560\|JGI25383J37093_10035086	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300002561\|JGI25384J37096_10089777	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300002911\|JGI25390J43892_10159054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300002911\|JGI25390J43892_10177586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M
3300002915\|JGI25387J43893_1034468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	681	Open in IMG/M
3300005167\|Ga0066672_11033409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M
3300005172\|Ga0066683_10351808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	914	Open in IMG/M
3300005176\|Ga0066679_10058440	All Organisms → cellular organisms → Bacteria	2246	Open in IMG/M
3300005180\|Ga0066685_10007810	All Organisms → cellular organisms → Bacteria	5773	Open in IMG/M
3300005181\|Ga0066678_10074994	All Organisms → cellular organisms → Bacteria	1991	Open in IMG/M
3300005186\|Ga0066676_10310983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1045	Open in IMG/M
3300005435\|Ga0070714_101801622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	598	Open in IMG/M
3300005446\|Ga0066686_10196047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1352	Open in IMG/M
3300005471\|Ga0070698_100360582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1385	Open in IMG/M
3300005545\|Ga0070695_100089000	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300005546\|Ga0070696_101785215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	531	Open in IMG/M
3300005554\|Ga0066661_10485593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	749	Open in IMG/M
3300005557\|Ga0066704_10638451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	679	Open in IMG/M
3300005558\|Ga0066698_10698608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300005559\|Ga0066700_10506481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	842	Open in IMG/M
3300005560\|Ga0066670_10433852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	809	Open in IMG/M
3300005560\|Ga0066670_10695528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	616	Open in IMG/M
3300005568\|Ga0066703_10156682	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300005568\|Ga0066703_10472440	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005574\|Ga0066694_10177453	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300005575\|Ga0066702_10042954	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300005575\|Ga0066702_10570150	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005586\|Ga0066691_10069823	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300006041\|Ga0075023_100346606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	627	Open in IMG/M
3300006047\|Ga0075024_100622723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	583	Open in IMG/M
3300006050\|Ga0075028_100353266	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300006055\|Ga0097691_1161922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	591	Open in IMG/M
3300006162\|Ga0075030_100344031	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300006794\|Ga0066658_10191662	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300006871\|Ga0075434_100437573	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300006914\|Ga0075436_100205526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1395	Open in IMG/M
3300006954\|Ga0079219_12357843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	516	Open in IMG/M
3300007255\|Ga0099791_10429280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	638	Open in IMG/M
3300007265\|Ga0099794_10604024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	581	Open in IMG/M
3300009038\|Ga0099829_11785486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	503	Open in IMG/M
3300009089\|Ga0099828_11513342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	591	Open in IMG/M
3300009089\|Ga0099828_11685235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300009137\|Ga0066709_101464314	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300009143\|Ga0099792_10272845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	993	Open in IMG/M
3300010326\|Ga0134065_10147514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	819	Open in IMG/M
3300010329\|Ga0134111_10067009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1332	Open in IMG/M
3300010333\|Ga0134080_10014507	All Organisms → cellular organisms → Bacteria	2853	Open in IMG/M
3300010371\|Ga0134125_13096101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	504	Open in IMG/M
3300011269\|Ga0137392_10840115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	757	Open in IMG/M
3300011270\|Ga0137391_10700778	All Organisms → cellular organisms → Bacteria → Terrabacteria group	841	Open in IMG/M
3300011271\|Ga0137393_11284512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	620	Open in IMG/M
3300012096\|Ga0137389_10701608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	869	Open in IMG/M
3300012189\|Ga0137388_10374961	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300012199\|Ga0137383_11185655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	549	Open in IMG/M
3300012200\|Ga0137382_10093087	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300012206\|Ga0137380_11114547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	672	Open in IMG/M
3300012206\|Ga0137380_11501358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300012207\|Ga0137381_11191648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	654	Open in IMG/M
3300012209\|Ga0137379_10096985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2837	Open in IMG/M
3300012359\|Ga0137385_11566481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300012361\|Ga0137360_10185569	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300012399\|Ga0134061_1032582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	691	Open in IMG/M
3300012402\|Ga0134059_1353940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1196	Open in IMG/M
3300012685\|Ga0137397_10917503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	649	Open in IMG/M
3300012918\|Ga0137396_10075303	All Organisms → cellular organisms → Bacteria	2367	Open in IMG/M
3300015356\|Ga0134073_10121508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	796	Open in IMG/M
3300017656\|Ga0134112_10127521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	969	Open in IMG/M
3300017656\|Ga0134112_10382658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	579	Open in IMG/M
3300017657\|Ga0134074_1361458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	537	Open in IMG/M
3300018433\|Ga0066667_10356128	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300020004\|Ga0193755_1038823	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300020579\|Ga0210407_10762733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	748	Open in IMG/M
3300020581\|Ga0210399_11483943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	527	Open in IMG/M
3300021088\|Ga0210404_10201677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1067	Open in IMG/M
3300021420\|Ga0210394_10082185	All Organisms → cellular organisms → Bacteria	2782	Open in IMG/M
3300022691\|Ga0248483_147977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	750	Open in IMG/M
3300024330\|Ga0137417_1331587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300025509\|Ga0208848_1111142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	545	Open in IMG/M
3300025581\|Ga0208355_1071196	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300025922\|Ga0207646_10014995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7335	Open in IMG/M
3300025922\|Ga0207646_11762492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300026078\|Ga0207702_12462931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	507	Open in IMG/M
3300026309\|Ga0209055_1131678	All Organisms → cellular organisms → Bacteria → Terrabacteria group	918	Open in IMG/M
3300026310\|Ga0209239_1074837	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300026316\|Ga0209155_1114098	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300026322\|Ga0209687_1163858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	709	Open in IMG/M
3300026328\|Ga0209802_1137162	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300026330\|Ga0209473_1282480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300026331\|Ga0209267_1014403	All Organisms → cellular organisms → Bacteria	4142	Open in IMG/M
3300026335\|Ga0209804_1291159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	561	Open in IMG/M
3300026342\|Ga0209057_1074705	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300026358\|Ga0257166_1025617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	793	Open in IMG/M
3300026523\|Ga0209808_1003086	All Organisms → cellular organisms → Bacteria	8555	Open in IMG/M
3300026527\|Ga0209059_1230541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	621	Open in IMG/M
3300026537\|Ga0209157_1262665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	662	Open in IMG/M
3300026538\|Ga0209056_10220962	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M
3300027603\|Ga0209331_1085978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	776	Open in IMG/M
3300027643\|Ga0209076_1099466	All Organisms → cellular organisms → Bacteria → Terrabacteria group	825	Open in IMG/M
3300027725\|Ga0209178_1346375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	555	Open in IMG/M
3300027727\|Ga0209328_10083060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	980	Open in IMG/M
3300027748\|Ga0209689_1134485	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300027748\|Ga0209689_1252224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	721	Open in IMG/M
3300027765\|Ga0209073_10378314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Chromobacterium group → Chromobacterium	576	Open in IMG/M
3300027787\|Ga0209074_10055245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1227	Open in IMG/M
3300027787\|Ga0209074_10205356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	742	Open in IMG/M
3300027862\|Ga0209701_10043031	All Organisms → cellular organisms → Bacteria	2913	Open in IMG/M
3300027875\|Ga0209283_10918026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300027910\|Ga0209583_10757740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	512	Open in IMG/M
3300032261\|Ga0306920_103619461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.37%
Host-Associated	Host-Associated	2.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.98%
Aquatic	Environmental → Aquatic	4.39%
Plants	Host-Associated → Plants	2.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.98%
Sediment	Environmental → Aquatic → Sediment	4.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.46%
Loam	Environmental → Terrestrial → Soil → Loam	10.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.88%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	35.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.39%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	28.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.39%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918006	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300022691	Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025581	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P1_C_01178300	2140918006	Soil	MDPTDLRAGLAERLAGDEPIDAQTFNAACFMLSRAVEEMDLTISEAAPLVRRLLRV
JGI12053J15887_102977931	3300001661	Forest Soil	MDPTDLRAELAEWMSGTEPIDAKTFNAACFMLSRALEGMDFTVADAAPLVRRLLRVAGRVVIDTGMTDS
JGIcombinedJ26739_1001596383	3300002245	Forest Soil	MDPSDLRAGLAERLAEDAPIDASTFNSACFMLSRALEDIGFSVPEAAPLVRRL
JGIcombinedJ26739_1017669091	3300002245	Forest Soil	MDPSDLRAELAERLAGARPIDAETVNAACFMLSRALQDIEFSVPEAA
JGI25383J37093_100350863	3300002560	Grasslands Soil	MDPSDLRTGLAERLAKAEPIDAETFNAACFMLSRALEDLELTVPEAAPLVRRLLRVAGRVIIDTGETGASQDVW
JGI25384J37096_100897771	3300002561	Grasslands Soil	MDPSDLRADLAERLANDRPIDAETFNAACFMLSRALENLEFSVPEAAPLVR
JGI25390J43892_101590541	3300002911	Grasslands Soil	MDPSDLRADLAERLANDRPIDAETFNAACFMLSRALENLEFSVPEAAPL
JGI25390J43892_101775861	3300002911	Grasslands Soil	MDPSDLRAELAERLANSTPIDAETFNAACFVLTRALEQLEFTSPDAAPLVRRLL
JGI25387J43893_10344681	3300002915	Grasslands Soil	MDPSDLRAELAERLANSTPIDAETFNAACFVLTRALEQLEFTSPDAAPLVRRLLRVAGRVVI
Ga0066672_110334091	3300005167	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLLRVAGRVIIDTAA
Ga0066683_103518081	3300005172	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAA
Ga0066679_100584403	3300005176	Soil	MDPTDLRAELAERLANSAPIDAETFNAACFMLSQALENLEFTVPEAAPLVR
Ga0066685_100078101	3300005180	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAP
Ga0066678_100749941	3300005181	Soil	MDPSNLRAGVAEKLAGEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIRRLLRVCGRV
Ga0066676_103109833	3300005186	Soil	MDPTDLRAELAERLANGTPIDAQTFNAACFMLSRALENLEFSVPEAAPLARRLLRVVGRV
Ga0070714_1018016221	3300005435	Agricultural Soil	MDPSDLRAELAERLANSTPIDAETFNSACFMLVRALESLEFSTPEAEALVRRLLRVAGRVVIDTAVTGA
Ga0066686_101960471	3300005446	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLARSLEELEFSVPEAAPLVRRLLRVA
Ga0070698_1003605823	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDPSDLRADLAERLANSTPIDAQTFNAACFVLTRALEDLEFSSPEAAPLVRRLLRVAGRVVIDT
Ga0070695_1000890003	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MDPSDLRAELAERLANSTPIDAATINAACFMLTRALEELEFSVPEAAPLVRHLL
Ga0070696_1017852151	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDPSDLRAELAERLANSTPIDAETVNAACFMLTRALEELEFCVPEAAPLVRR
Ga0066661_104855932	3300005554	Soil	MDPSDLRADLAERLANDRPIDAETFNAACFMLSRALENLEFSVPEAAPLV
Ga0066704_106384511	3300005557	Soil	MDPTDLRAELAERLSGDEPIDAQTFNAACFMLSRALENLNLSVPDAAPLVRRLL
Ga0066698_106986082	3300005558	Soil	MDPSDLRADLAARLANSTAIDAETFNAACFMLTRALEGLEFTSPEAAPLVRRLLRVAGRVVIDSAA
Ga0066700_105064813	3300005559	Soil	MDPSDLRAELAERLANSTAIDAETFNAACFVLSRALESLEFSVPEAAPLVRRLLRVAGR
Ga0066670_104338522	3300005560	Soil	MDPSNLRAGVAERLAGEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIKSLLRVCGRVAIDMGVESSSADVWPNTR
Ga0066670_106955282	3300005560	Soil	MDPSDLRAELAERLANSTPIDAETFNAACFVLTRALEQLEFTSPDAAPLVRRLLRVAGRVVIDTAT
Ga0066703_101566821	3300005568	Soil	MDPSDLRAGLAERLARSEPVDAETFNAACFMLSRALQDMTLTVPEAAP
Ga0066703_104724402	3300005568	Soil	MDPSDLRAGLAERLARSEPIDAETFNAACFMLSRALQDMTFSVPEAAPLVRRLLRVAGRAVIDTGLPDSSPETWLN
Ga0066694_101774533	3300005574	Soil	MDPSDLRAELAERLANSTAIDAETFNAACFVLSRALESLEFSVPEAAPLVRRLLRVAGRVIIDTAAADASPDVWPNTQDM
Ga0066702_100429543	3300005575	Soil	MDPSNLRAGVAERLAGEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIKSLLRVCGRVAIDMGVESSSADIWP
Ga0066702_105701501	3300005575	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLLRVAGRVIIDTAAADSSPEM
Ga0066691_100698231	3300005586	Soil	MDPSNLRAGVAEKLAGGAAIDAETFNAACFMLTRSLEDLEFAVPEAAPLIR
Ga0075023_1003466061	3300006041	Watersheds	MEPSDLRAGLAEKLSSGDPINAQTFNAACFVLSRALDDLSLSVPQATPL
Ga0075024_1006227232	3300006047	Watersheds	MDPTDLRAGLAERLASGDPIDAATFNAACFVLTRALDEISLDAPEAAPLVRRALRVAGRVVIDMASPPSSPEEWPN
Ga0075028_1003532663	3300006050	Watersheds	MDPTDLRAGLADRLAGDDPIDAETFNAACFMLSRALDQLALVVPEAAPLARRLLRVAGRIVI
Ga0097691_11619222	3300006055	Arctic Peat Soil	MDPTDLRRRAEKLSANEPIDAQTFNAACFMLSRALEGLELTVLEAAPLTRRLLRVAGRIVIDTGLEGSSPATWANTEAM
Ga0075030_1003440311	3300006162	Watersheds	MDPTDLRAGLAERLAGREPIDAQTFNAACFMLSRAVDDLHLTVPEAAPLVR
Ga0066658_101916623	3300006794	Soil	MDPSDLRAGLAERLAGSDPMDAETFNAACFMLSRSLEEIEFSVPEAAALIRRLLRVCGRVAIDTGTAPASADVW
Ga0075434_1004375733	3300006871	Populus Rhizosphere	MDPTDLRAEVAERLANSTPIDAQTFNATCFMLSRALENLEFSVPEAG
Ga0075436_1002055261	3300006914	Populus Rhizosphere	MDPSDLRAELAERLANGTPIDAETFNAACFMLTRALEGLEFSTPEAAPLVRRLLRVAGRV
Ga0079219_123578431	3300006954	Agricultural Soil	MDPSDLRAELAERLANSTPIDAETFNAACFMLTRALEEMELSVPDAAPLVRRL
Ga0099791_104292801	3300007255	Vadose Zone Soil	MDPSDLRAGLAERLAQSEPIDAETFNAACFMLSRALEEMSFSVPEAAPLVRRLLRLAGRVMIDTGLPESAPG
Ga0099794_106040241	3300007265	Vadose Zone Soil	MDPSDLRAGLAERLANAEPIDAQTFNVACFMLSRALDDLELSVPEAAP
Ga0099829_117854862	3300009038	Vadose Zone Soil	MDPSDLRAGLAERLAKAEPIDAPTFNAACFILSRSLEDLDLSVPEAAPLVRRLLRVAGRVIIDTGEPSASPDVW
Ga0099828_115133421	3300009089	Vadose Zone Soil	MDPTDLRAGLAERLAGSESIDAQTFNAACFMLSRALDELTLTVPEAAPLAKRLLR
Ga0099828_116852351	3300009089	Vadose Zone Soil	MDPSNLRAGVAEKLASEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIRRLLRVCGRVAID
Ga0066709_1014643141	3300009137	Grasslands Soil	MDPSDLRAGLAERLASGDPIDAETFNAACFMLSRALDEIEFSVPDAAPLIKR
Ga0099792_102728453	3300009143	Vadose Zone Soil	MDPTDLRAGLAEKLSGNEPIDAQTFNAACFMLSRSLEGLELTVSEAAPLVRRLLRVSGRVVIDTGL
Ga0134065_101475141	3300010326	Grasslands Soil	MDPSDLRADLAARLANSTAIDAETFNAACFMLTRALEGLEFTSPEAAPLVRRLLRVAGRVVIDTAAA
Ga0134111_100670091	3300010329	Grasslands Soil	MDPSDLRADLAERLANDRPIDAETFNAACFMLSRALENLEFSVPEAAPLVRRLLRVAG
Ga0134080_100145074	3300010333	Grasslands Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLLR
Ga0134125_130961011	3300010371	Terrestrial Soil	MDPSDLRAELAERLANSTPIDAATINAACFMLTRALEELEFSVPEAAPLVRRLLRV
Ga0137392_108401151	3300011269	Vadose Zone Soil	MDPTDLRAGLAERLGGSEPIDAQTFNSACFMLSRALEDLALSVPEASPLARRLL
Ga0137391_107007781	3300011270	Vadose Zone Soil	MDPSDLRAGLAEKLAGAAPIDAETFNAACFMLSRALEEIEFSVPEAAPLVRSLL
Ga0137393_112845121	3300011271	Vadose Zone Soil	MDPSDLRSGLADRLASGEPIDAETFNAACFMLSRALEGMSFSVPEAASLVR
Ga0137389_107016081	3300012096	Vadose Zone Soil	MDPSNLRAGVAERLAGEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIRRLLRVCGRVAI
Ga0137388_103749611	3300012189	Vadose Zone Soil	MDPTDLRAELAERLANGTPIDAETFNAACFMLTRALENLEFTVPDAAPLVRRLLRV
Ga0137383_111856551	3300012199	Vadose Zone Soil	MDPSDLRAELAERLANSTPIDAETFNAACFMLTRALEELELAVPEAAPLVRRLLRVAGRV
Ga0137382_100930871	3300012200	Vadose Zone Soil	MDPTDLRAGLAERLAGSESIDPQTFNAACFMLSRALDDLALTVPEAAP
Ga0137380_111145472	3300012206	Vadose Zone Soil	MDPTDLRAGLAEKLSTNEPIDAQTFNAACFMLSRSLEDLTLTAAEAAPLIRRLLRVAGRVIIYTGRAGSTLDA*
Ga0137380_115013581	3300012206	Vadose Zone Soil	MDPSDLRAGLAEKLRGSEPVDAETLNAACFMLSRALDGIHFSVEEAAPLIRRLLRVAGR
Ga0137381_111916481	3300012207	Vadose Zone Soil	MDPSDLRADLAERLANDRPIDAETFNAACFMLSRALENLEFSVPEAAPLVRRLLRVAGRV
Ga0137379_100969851	3300012209	Vadose Zone Soil	MDPSDLRAGVAESLAKDAPIDAATFNAACFMLSRALDEIGFSVPDAAPLVRRLLRVA
Ga0137387_101340341	3300012349	Vadose Zone Soil	MTPSLWANNTGQMDPSNLRAGVAERLASEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIRRLLRVCGRVAIDTG
Ga0137385_115664811	3300012359	Vadose Zone Soil	MDPSDLRAELAERLANGTPIDAQTVNAACFMLTRALEELEFSVPEAAPLVRR
Ga0137360_101855693	3300012361	Vadose Zone Soil	MAPSLSANNTGQMDPSNLRAGVAERLAGEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIRRLLRVCGRVAIDMGVESSSADTWPNT
Ga0134061_10325821	3300012399	Grasslands Soil	MDPSDLRAELAERLANGTPINAETFNAACFMLTRALEGLEFSTPEAAPLV
Ga0134059_13539401	3300012402	Grasslands Soil	MDPSDLRADLAERMANDRPIDAETFNAACFMLSRALENLEFSVPEAAPLVRRLLR
Ga0137397_109175031	3300012685	Vadose Zone Soil	MDPTDLRAGLAERLAGSESIDPQTFNAACFMLSRALDELALTVPEAAPL
Ga0137396_100753033	3300012918	Vadose Zone Soil	MDPSDLRAGLAERLAQSEPIDAETFNAACFMLSRALQDMSFSVPEAAPLVRR
Ga0134073_101215081	3300015356	Grasslands Soil	MDPSDLRAELAERLANSTAIDAETFNAACFMLTRALEGLEFTSPEAAPLVRRLLSVAGRVVIDTAAADA
Ga0134112_101275211	3300017656	Grasslands Soil	MDPSDLRADLAERLANDRPIDAETFNAACFMLSRALENLEFSVPEAAPLVRRLLRVAGR
Ga0134112_103826582	3300017656	Grasslands Soil	MDPSNLRAGVAEKLAGEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIRRLLRVCGRVAIDMGVESSSADVW
Ga0134074_13614582	3300017657	Grasslands Soil	MDPSNLRAGVAEKLAGEAAIDAETFNAACFMLTRSLEEIEFAVAEAAPLIRRLLRVCGRVAIDMGVESSSADVW
Ga0066667_103561283	3300018433	Grasslands Soil	MDPSDLRAELAERLANSTAIDAETFNAACFVLSRALADLEFIVPEAAPLV
Ga0193755_10388231	3300020004	Soil	MDPTDLRAGLAERLAGSESIDSQTFNAACFMLSRALDELALTVPEAAPLAKR
Ga0210407_107627331	3300020579	Soil	MDPTDLRAELAERLAGDRPIDAEAFNAACFMLSRALEEMNLSVPEAAPL
Ga0210399_114839431	3300020581	Soil	MDPTDLRAGLADRLAGDDPIDAETFNAACFMLSRALDQLALAVPEAAPLARRLLR
Ga0210404_102016771	3300021088	Soil	MDPSDLRSGLADRLASGEPIDAETFNAACFMLSRALEGMSFAVPEAAP
Ga0210394_100821854	3300021420	Soil	MDPTDLRAGLAEKLAANEPIDAQTFNAACFMLSRSLEGFGLTAPEAAPLVRRLLRVSGRVVI
Ga0248483_1479772	3300022691	Soil	MDPTDLRAELAERLANSTPIDAETFNAACFMLTRALDQLEFSVADAQPLVRR
Ga0137417_13315871	3300024330	Vadose Zone Soil	MITRRMDPTDLRAGLAERLAGSETIDAQTFNAACFMLSRALDELALTVPEAATLAKRLR
Ga0208848_11111422	3300025509	Arctic Peat Soil	MDPTDLRAGLAEKLSANEPIDAQTFNAACFMLSRALEGLELTVLEAAPLTRRLLRVAGRIVIDTGLEGSSPATWA
Ga0208355_10711961	3300025581	Arctic Peat Soil	MDPTDLRAGLAEKLSANEPIDAQTFNAACFMLSRALEGLELTVLEAAPLTRRLLRVAGRIVIDTGLEGSSPATWGNTEAMALLWIDEA
Ga0207646_100149958	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDPSDLRAGLAEKLAGAAPIDAETFNSACFMLSRALEEIEFAVPEAAPLV
Ga0207646_117624922	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDPSDLRAGLAERLASGEPIDAETFNAACFMLSRALEEIAFSVPEAAPLVRRLLRVAGRVVID
Ga0207702_124629312	3300026078	Corn Rhizosphere	MDPSDLRAELAERLANSTPLDAETFNAACFMLTRALEELELTVPEAAPLVRRLLRVA
Ga0209055_11316783	3300026309	Soil	MDPSDLRAELAERLAAAGPIDAEMVNAACFILSRALEDIDFSVPEAAPLLRRVLRVA
Ga0209239_10748373	3300026310	Grasslands Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLLRVAGRVIIDTAAVDSSPEMWPNTRE
Ga0209155_11140983	3300026316	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPL
Ga0209687_11638582	3300026322	Soil	MDPSDLRAELAERLANSTAIDAETFNAACFVLSRALVDLEFIVPEAAPLVR
Ga0209802_11371622	3300026328	Soil	MDPSDLRAELAERLANSTPIDAETFNAACFMLTRALEQLELSVPDAAPLVRRLLRVAGRVVIDEALRALGYEARPAEPA
Ga0209473_12824802	3300026330	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLL
Ga0209267_10144031	3300026331	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLLRVAGRV
Ga0209804_12911591	3300026335	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVR
Ga0209057_10747053	3300026342	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLLRVAGRVIIDTAAA
Ga0257166_10256171	3300026358	Soil	MDPSDLRAGLAEKLAGAAPIDAETFNSACFMLSRALGEIEFSVPEAAPLV
Ga0209808_10030861	3300026523	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLSRSLEELEFSVPEAAPLVRRLLRVAGRVIIDTAAAESSPETWPNTREI
Ga0209059_12305411	3300026527	Soil	MDPSNLRAGVAERLAGEAAIDAETFNAACFMLTRSLEEIEFAVPEAAPLIKSLLRVCGRVAIDMGVESSSADIWPNTRE
Ga0209157_12626651	3300026537	Soil	MDPTDLRAELAERLAHGRPLDAEAFNAACFMLARSLEELEFSVPEAAPLVRR
Ga0209056_102209621	3300026538	Soil	MDPSDLRAELAERLANSTAIDAETFNAACFVLSRALADLEFIVPEAAPLVRRL
Ga0209331_10859782	3300027603	Forest Soil	MDPTDLRAGLAERLAGGEAIDAQVFNSACFMLSRALEDLALSVPEAAPLARRLLRVA
Ga0209076_10994661	3300027643	Vadose Zone Soil	MDPSDLRAELAERLAAAGPIDAEVVNAACFMLSRALQDIDFSVPEAAPLLRRVLRVAGR
Ga0209178_13463751	3300027725	Agricultural Soil	VDPTDLRAELAERLANSTPIDAETFNAACFMLTRALGELELSVPDAEPLVRRLLRVVGRVVI
Ga0209328_100830603	3300027727	Forest Soil	MDPSDLRAGLAERLAEDAPIDASTFNSACFMLSRALEDIGFSVPEAAPLVRRLLRVA
Ga0209689_11344851	3300027748	Soil	MDPSDLRAELAERLANSTAIDAETFNAACFVLSRALESLEFSVPEAAP
Ga0209689_12522242	3300027748	Soil	MDPTDLRAELAEQLANSKAIDAETFNAVCFLLTRALDGLELKVPDAAPLV
Ga0209073_103783143	3300027765	Agricultural Soil	MDPSDLRAGLAERLANSTPIDAETFNAACFMLTRALEDLEFAVPEAAPLVRRL
Ga0209074_100552453	3300027787	Agricultural Soil	VDPTDLRAELAERLANSTPIDAETFNAACFMLTRALDELEFSVPDAEPLVRRLLR
Ga0209074_102053561	3300027787	Agricultural Soil	MDPSDLRAELAERLANSTPIDAETFNSACFMLVRALESLEFSTPEAEALVRRLLRVAGRVVIDTAVT
Ga0209701_100430315	3300027862	Vadose Zone Soil	MDPSDLRSGLADRLAGGEPIDAETFNAACFMLTRALEAMSFSVPEAAPLVRRL
Ga0209283_109180262	3300027875	Vadose Zone Soil	MDPSDLRSGLAERLAGGETIDAETFNAACFMLARALEEMSFSVPEAAPLVRRL
Ga0209583_107577402	3300027910	Watersheds	MDPTDLRAGLAERLAGAEPIDASTFNTACFLLSKALEGLPLAVPQAAPLVRTALRVAGRIVIDTGA
Ga0306920_1036194612	3300032261	Soil	MDPSDLRAELAERLANSTPVDAASFSAVCFLLTRELERLEFSVPEAAPLVRRLLRVAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081142

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences