Metagenome / Metatranscriptome Family F081137

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081137
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	79 residues
Representative Sequence	MRQFILPAVLATAAVTGLSTPSAAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR
Number of Associated Samples	78
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.78 %
% of genes near scaffold ends (potentially truncated)	18.42 %
% of genes from short scaffolds (< 2000 bps)	76.32 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.526 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (21.053 % of family members)
Environment Ontology (ENVO)	Unclassified (40.351 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.368 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.17% β-sheet: 5.61% Coil/Unstructured: 68.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF03734	YkuD	27.19
PF07859	Abhydrolase_3	10.53
PF00216	Bac_DNA_binding	7.89
PF01977	UbiD	2.63
PF03401	TctC	0.88
PF01381	HTH_3	0.88
PF00043	GST_C	0.88
PF05050	Methyltransf_21	0.88
PF05990	DUF900	0.88
PF05076	SUFU	0.88
PF00534	Glycos_transf_1	0.88
PF09955	DUF2189	0.88
PF13578	Methyltransf_24	0.88
PF00037	Fer4	0.88
PF02798	GST_N	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	27.19
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	27.19
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	10.53
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	7.89
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	2.63
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.88
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.88
COG4782	Esterase/lipase superfamily enzyme	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.53 %
Unclassified	root	N/A	39.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.53 %
Unclassified	root	N/A	39.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.53 %
Unclassified	root	N/A	39.47 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.51 %
Unclassified	root	N/A	39.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.47 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.84 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.02 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.39 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.47 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.63 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.47 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.63 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003324\|soilH2_10251983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1408	Open in IMG/M
3300003659\|JGI25404J52841_10037442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1031	Open in IMG/M
3300004633\|Ga0066395_10267711	Not Available	922	Open in IMG/M
3300005332\|Ga0066388_100042740	All Organisms → cellular organisms → Bacteria → Proteobacteria	4513	Open in IMG/M
3300005332\|Ga0066388_100213880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2554	Open in IMG/M
3300005332\|Ga0066388_100525485	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1816	Open in IMG/M
3300005332\|Ga0066388_100802927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1533	Open in IMG/M
3300005332\|Ga0066388_102608775	Not Available	920	Open in IMG/M
3300005332\|Ga0066388_104221783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300005332\|Ga0066388_104244693	Not Available	730	Open in IMG/M
3300005455\|Ga0070663_100274556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1341	Open in IMG/M
3300005555\|Ga0066692_10549536	Not Available	730	Open in IMG/M
3300005557\|Ga0066704_10238260	All Organisms → cellular organisms → Bacteria → Proteobacteria	1235	Open in IMG/M
3300005598\|Ga0066706_10331889	All Organisms → cellular organisms → Bacteria → Proteobacteria	1203	Open in IMG/M
3300005713\|Ga0066905_100009619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4497	Open in IMG/M
3300005713\|Ga0066905_100186889	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300005713\|Ga0066905_100193021	All Organisms → cellular organisms → Bacteria → Proteobacteria	1514	Open in IMG/M
3300005713\|Ga0066905_100580233	Not Available	946	Open in IMG/M
3300005713\|Ga0066905_101492642	Not Available	615	Open in IMG/M
3300005713\|Ga0066905_101602244	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300005764\|Ga0066903_100029461	All Organisms → cellular organisms → Bacteria → Proteobacteria	6162	Open in IMG/M
3300005764\|Ga0066903_105758571	Not Available	651	Open in IMG/M
3300005833\|Ga0074472_10791209	All Organisms → cellular organisms → Bacteria	2290	Open in IMG/M
3300005833\|Ga0074472_10976852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1091	Open in IMG/M
3300005833\|Ga0074472_11504749	All Organisms → cellular organisms → Bacteria	2244	Open in IMG/M
3300005843\|Ga0068860_101710665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300005937\|Ga0081455_10013369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8118	Open in IMG/M
3300005983\|Ga0081540_1026477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3308	Open in IMG/M
3300005983\|Ga0081540_1043729	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M
3300006047\|Ga0075024_100438699	Not Available	672	Open in IMG/M
3300006794\|Ga0066658_10543218	Not Available	632	Open in IMG/M
3300006854\|Ga0075425_100284581	All Organisms → cellular organisms → Bacteria → Proteobacteria	1903	Open in IMG/M
3300009012\|Ga0066710_103623762	Not Available	582	Open in IMG/M
3300009090\|Ga0099827_11783922	Not Available	536	Open in IMG/M
3300009101\|Ga0105247_11868356	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300009147\|Ga0114129_11306830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	899	Open in IMG/M
3300009822\|Ga0105066_1166476	Not Available	511	Open in IMG/M
3300010043\|Ga0126380_10014215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3662	Open in IMG/M
3300010043\|Ga0126380_10148604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1496	Open in IMG/M
3300010043\|Ga0126380_11446005	Not Available	606	Open in IMG/M
3300010046\|Ga0126384_10607579	Not Available	958	Open in IMG/M
3300010046\|Ga0126384_11185890	Not Available	704	Open in IMG/M
3300010046\|Ga0126384_11460784	Not Available	639	Open in IMG/M
3300010047\|Ga0126382_10010556	All Organisms → cellular organisms → Bacteria → Proteobacteria	4414	Open in IMG/M
3300010047\|Ga0126382_10338722	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1147	Open in IMG/M
3300010047\|Ga0126382_10851314	Not Available	783	Open in IMG/M
3300010047\|Ga0126382_11255917	Not Available	667	Open in IMG/M
3300010154\|Ga0127503_11261723	Not Available	863	Open in IMG/M
3300010359\|Ga0126376_11671319	Not Available	671	Open in IMG/M
3300010360\|Ga0126372_10039456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3075	Open in IMG/M
3300010360\|Ga0126372_12342784	Not Available	584	Open in IMG/M
3300010360\|Ga0126372_12483183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300010362\|Ga0126377_10009675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7447	Open in IMG/M
3300010362\|Ga0126377_10063807	Not Available	3253	Open in IMG/M
3300010362\|Ga0126377_10142733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2241	Open in IMG/M
3300010362\|Ga0126377_11270677	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	808	Open in IMG/M
3300010362\|Ga0126377_11765055	Not Available	694	Open in IMG/M
3300010362\|Ga0126377_13342353	Not Available	519	Open in IMG/M
3300010366\|Ga0126379_13079986	Not Available	558	Open in IMG/M
3300010398\|Ga0126383_12467461	Not Available	604	Open in IMG/M
3300010403\|Ga0134123_11616436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300012081\|Ga0154003_1036098	Not Available	868	Open in IMG/M
3300012199\|Ga0137383_10824123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300012200\|Ga0137382_11098333	Not Available	568	Open in IMG/M
3300012206\|Ga0137380_10771607	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300012207\|Ga0137381_11728695	Not Available	515	Open in IMG/M
3300012209\|Ga0137379_10225556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1788	Open in IMG/M
3300012210\|Ga0137378_11118329	All Organisms → cellular organisms → Bacteria → Proteobacteria	703	Open in IMG/M
3300012211\|Ga0137377_10196828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1935	Open in IMG/M
3300012212\|Ga0150985_105181119	Not Available	519	Open in IMG/M
3300012212\|Ga0150985_116415296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1236	Open in IMG/M
3300012349\|Ga0137387_10136154	All Organisms → cellular organisms → Bacteria → Proteobacteria	1741	Open in IMG/M
3300012351\|Ga0137386_10400917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300012360\|Ga0137375_10100626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2944	Open in IMG/M
3300012362\|Ga0137361_11654343	Not Available	560	Open in IMG/M
3300012469\|Ga0150984_104000437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3216	Open in IMG/M
3300012582\|Ga0137358_10726353	Not Available	664	Open in IMG/M
3300012685\|Ga0137397_10044356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3180	Open in IMG/M
3300012924\|Ga0137413_10255310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1205	Open in IMG/M
3300012925\|Ga0137419_10196925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1489	Open in IMG/M
3300012929\|Ga0137404_10513561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1070	Open in IMG/M
3300012930\|Ga0137407_10173631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1920	Open in IMG/M
3300013308\|Ga0157375_10455413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1445	Open in IMG/M
3300015242\|Ga0137412_10191956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1634	Open in IMG/M
3300015373\|Ga0132257_102459981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300018028\|Ga0184608_10005637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4052	Open in IMG/M
3300018054\|Ga0184621_10182234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300018075\|Ga0184632_10317540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300018081\|Ga0184625_10256719	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	915	Open in IMG/M
3300018431\|Ga0066655_11260938	Not Available	528	Open in IMG/M
3300018468\|Ga0066662_11045572	Not Available	812	Open in IMG/M
3300018468\|Ga0066662_12215243	Not Available	577	Open in IMG/M
3300020002\|Ga0193730_1111234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300020170\|Ga0179594_10005963	All Organisms → cellular organisms → Bacteria → Proteobacteria	3149	Open in IMG/M
3300020170\|Ga0179594_10155330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300026285\|Ga0209438_1021849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2136	Open in IMG/M
3300027669\|Ga0208981_1044425	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300027903\|Ga0209488_10111588	All Organisms → cellular organisms → Bacteria → Proteobacteria	2054	Open in IMG/M
3300027907\|Ga0207428_10519605	Not Available	863	Open in IMG/M
3300028381\|Ga0268264_12031844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300028536\|Ga0137415_10099053	All Organisms → cellular organisms → Bacteria	2768	Open in IMG/M
3300031091\|Ga0308201_10333732	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300031092\|Ga0308204_10175266	Not Available	653	Open in IMG/M
3300031093\|Ga0308197_10043051	Not Available	1130	Open in IMG/M
3300031184\|Ga0307499_10203970	Not Available	610	Open in IMG/M
3300031740\|Ga0307468_100011993	All Organisms → cellular organisms → Bacteria → Proteobacteria	3447	Open in IMG/M
3300031740\|Ga0307468_100551774	Not Available	928	Open in IMG/M
3300032180\|Ga0307471_102605426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300032205\|Ga0307472_101559994	Not Available	647	Open in IMG/M
3300034644\|Ga0370548_057809	Not Available	707	Open in IMG/M
3300034681\|Ga0370546_044872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.09%
Host-Associated	Host-Associated	14.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.19%
Plants	Host-Associated → Plants	14.04%
Aquatic	Environmental → Aquatic	7.89%
Fungi	Host-Associated → Fungi	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.89%
Sediment	Environmental → Aquatic → Sediment	7.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.14%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Mycelium	Host-Associated → Fungi → Mycelium	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.53%
Loam	Environmental → Terrestrial → Soil → Loam	15.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.88%
Sand	Environmental → Terrestrial → Soil → Sand	0.88%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.88%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.05%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.51%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.51%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.63%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.75%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.88%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.88%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012081	Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
soilH2_102519831	3300003324	Sugarcane Root And Bulk Soil	MRRFILATIFAVAAVTDYSTPRAAQQPYCHRGRACVPVTQATYNSCFELALARGESVSWRERRRLEWF
JGI25404J52841_100374421	3300003659	Tabebuia Heterophylla Rhizosphere	EPLMRQFILPAVLATATIAGVSTPSIAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0066395_102677112	3300004633	Tropical Forest Soil	MSRDGDRARGNSEEALMRQFFLPAVLAAAAVTGLATPSVAQQQPFCIAGRGCVPMTPASYNACFNLALARGESVAWGERHKLDWFIYQCLAGRIPR*
Ga0066388_1000427405	3300005332	Tropical Forest Soil	MRQFILSAMVAVVAASAFPTASTAQQPFCVRGRGCVPMTSASYNACFNLALARGESAAWGERRSLDWFIYQCLAGRIPR*
Ga0066388_1002138802	3300005332	Tropical Forest Soil	MRQFILPAMLAVAATTSFSTPSAAQQFCIAGRGCVPMTHASYNTCFNLALARGESAAWGERHKLDWFIFQCLAGRIPR*
Ga0066388_1005254852	3300005332	Tropical Forest Soil	MRQFILPAMLAVAATTGFSTPSAAQQFCIAGRGCVPMTNASYNACFNLALARGESSAWGERHKLDWFIFQCLAGRIPR*
Ga0066388_1008029273	3300005332	Tropical Forest Soil	MRQFILPAILAIAAVTGVATPSVAQQQPFCIAGRGCVPMTPASYNACFNLALARGESAAWGERHKLDWFIYQCLGGRIRR*
Ga0066388_1026087752	3300005332	Tropical Forest Soil	MRQFILPAMLAVAATTGFSTPSAAQQFCIAGRGCVPVTDASYNACFNLALARGESAAWGERHKLDWFIFQCLAGRIRR*
Ga0066388_1042217831	3300005332	Tropical Forest Soil	MRQFILPAILATATVAALATPSVAQQQFCVRGRGCVPVTQASYNACFNLALARGESVAWGERRRLDWFIYQCLAGRIPR*
Ga0066388_1042446931	3300005332	Tropical Forest Soil	MRQFILPAMLAVAATTGLSTPSAAQQPYCYPGRGCVPMTQASYNACFNLALARGESVAWGERRRLDWFIYQCLAGRIPR*
Ga0070663_1002745562	3300005455	Corn Rhizosphere	MRQFILSAVLATATMAGFSTPSIAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0066692_105495362	3300005555	Soil	MRQFILPAMLAVAAATTFSTPSAAQQFCIGGRGCVPVTDASYNACFNLALARGESVAWGERRKLDWFIFQCLAGR
Ga0066704_102382603	3300005557	Soil	MRQFILPAVLATAAVTGLSTPSAAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERHKLDWFIYQCLAGRIPR*
Ga0066706_103318893	3300005598	Soil	MRQFILPAVLATAAITGLSIPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0066905_1000096195	3300005713	Tropical Forest Soil	MRQFILPAMLAVAATTGLSTPSAAQQPYCYPGYGCVPMTQASYNACFNLALARGESVAWGERKRLDWFIYQCLAGRIPR*
Ga0066905_1001868893	3300005713	Tropical Forest Soil	MRQFVLSVMVAVVAATSFPTASSAQQPFCVRGRGCVPMTSASYNACYNLALARGESVAWGERRSLDWFIFQCLAGRISR*
Ga0066905_1001930212	3300005713	Tropical Forest Soil	MRQFILPAMLAVAATTGFSTPSAAQQFCIAGRGCVPMTHASYNTCFNLALARGESAAWGERHKLDWFIFQCLAGRIPR*
Ga0066905_1005802332	3300005713	Tropical Forest Soil	MRQFFLPAVLAAAAVTGLATPSVAQQQPFCIAGRGCVPMTPASYNACFNLALARGESVAWGERHKLDWFIYQCLAGRIPR*
Ga0066905_1014926421	3300005713	Tropical Forest Soil	VAGLATPTVAQQPFCIAGRGCVPMTQATYNACFNLALARGESVAWGERHKLDWFIYQCLAGKIRR*
Ga0066905_1016022441	3300005713	Tropical Forest Soil	MRQFILPAILAATAVTGLSTASDAQQAQCIRGRGCVPATQMTYNACYNLAIQRGESPLWGERRRLDWFIYQCLAGKIPR*
Ga0066903_1000294613	3300005764	Tropical Forest Soil	MRQFILPAILVVAAATGTSTPSAAQQRFCIAGRGCVPVTDASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0066903_1015205471	3300005764	Tropical Forest Soil	MRQLFLMTILTVGAVTDFSTPSVAAQPFCVRGRGCVPATQATYNSCFQLGLARGESVTVGEWRNFQRFIYQCLAGRIPR*
Ga0066903_1057585712	3300005764	Tropical Forest Soil	MRQFILPAVLATAVVAAFATPTVAKQQFCVAGRGCIPMTQATYNACYNLALKRGESTAWGERRSLDFFIYQCLAGKVRP*
Ga0074472_107912092	3300005833	Sediment (Intertidal)	MRQFILPTILALAAVASFSTPSAAQQQFCIRGRGCVPMTQASYNACFNLALARGESVAWGERRRLDWFIFQCLAGRIPR*
Ga0074472_109768522	3300005833	Sediment (Intertidal)	MRQIILPTILAVAAVTGFSTPSAAQQQFCIHGRGCVPVTEASYNACFNLALARGESVAWGERRRLDWFIYQCLAGRIPR*
Ga0074472_115047494	3300005833	Sediment (Intertidal)	MRQLILATIVAVAAATGFSTPSAAQQQFCIHGRGCVPVTQASYNACFNLALARGESVAWGERRRLDWFIFQCLAGKIPR*
Ga0068860_1017106651	3300005843	Switchgrass Rhizosphere	ALMRQFILPAVLATVAVTGLATPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0081455_100133695	3300005937	Tabebuia Heterophylla Rhizosphere	MRLFILPAMLAVAATTGLSTPSAAQQPYCYPGYGCVPMTQASYNACFNLALARGESVAWGERKRLDWFIYQCLAGRIPR*
Ga0081540_10264773	3300005983	Tabebuia Heterophylla Rhizosphere	MRQFILPAVLATATIAGVSTPSIAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0081540_10437292	3300005983	Tabebuia Heterophylla Rhizosphere	MRQFILSAILAATAVTGLSTASDAQQAQCIRGRGCVPANQMTYNACYNLAIARGESSLWGERKRLDWFIYQCLAGKIPR*
Ga0075024_1004386992	3300006047	Watersheds	MRQFILPAVLATAAIAGLSTPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0066658_105432181	3300006794	Soil	MRQFILPAVLATAAVTGLSTPSAAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0075425_1002845812	3300006854	Populus Rhizosphere	MRQFILPAVLATVAATGLSTPSSAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIRR*
Ga0066710_1036237621	3300009012	Grasslands Soil	MRQFILPAILAATAVAGLSTSSDAQPQCIRGRGCVPATPATYNECYNLAIKRGESALWGERKRLDWFIYQCLAGKIPR
Ga0099827_117839221	3300009090	Vadose Zone Soil	MRQFILPAVLATAAITGLSTPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIPR*
Ga0105247_118683561	3300009101	Switchgrass Rhizosphere	MRGFILATILAVGAVMHYSTPSAAQRAFCNRGRACVPVTQATYNSCFQLALARGESVSWRERRRLEWFIYQCL
Ga0114129_113068301	3300009147	Populus Rhizosphere	MRQFILPAILATAAVTGVSTPGVAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0105066_11664761	3300009822	Groundwater Sand	MRRFVLVTILAAGAVTEFSTASAAQAFCIRGRGCVPATPASYNSCFNLALARGESAAWGERRRLDWFIYQCLAGRIPR*
Ga0126380_100142153	3300010043	Tropical Forest Soil	MNRLPMSRDGDRARGNSEEALMRQFFLPAVLAAAAVTGLATPSVAQQQPFCIAGRGCVPMTPASYNACFNLALARGESVAWGERHKLDWFIYQCLAGRIPR*
Ga0126380_101486042	3300010043	Tropical Forest Soil	MRQFILPAVLATATVAGLSTPSVAQNQFCVRGRGCVPVTQASYNACFNLALARGESVAWGERRRLDWFIYQCLAGRIPR*
Ga0126380_114460052	3300010043	Tropical Forest Soil	MRQFVLSVMVAVVAATSFPTASSAQQPFCVRGRGCVPMTSASYNACYNLALARGESVAWGERRSLDWFIFQCLA
Ga0126384_106075791	3300010046	Tropical Forest Soil	MRQFILPAVLVTATVAGLSTPSVAQNKYCVRGRGCVPVTQASYNACFNLALARGESAAWGERRRLDWFIYQCLAGRIPR
Ga0126384_111858902	3300010046	Tropical Forest Soil	MRQLILSAMVAVVAAAAFPTASTAQQPFCVRGRGCVPTTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0126384_114607841	3300010046	Tropical Forest Soil	MRQFILPAMLAVAATTSFSTPSAAQQFCIAGRGCVPMTHASYNTCFNLALARGESSAWGERHKLDWFIFQCLAGRIPR*
Ga0126382_100105566	3300010047	Tropical Forest Soil	MRQFVLSVMVAVVAATSFPTASSAQQPFCVRGRGCVPMTSASYNACYNLALARGESVAWGERRSLDWFIFQCLAGRIPR*
Ga0126382_103387223	3300010047	Tropical Forest Soil	MRQFILPAMLAVAATTGFSTPSAAQQFCIAGRGCVPMTHASYNACFNLALARGESSAWGERHKLDWFIFQCLAGRIPR*
Ga0126382_108513141	3300010047	Tropical Forest Soil	MRQFILPAILAATAVTGLSTSSDAQQQQCIRGRGCVPATEASYNACYNLAIARGESPLWGERRRLDWFIYQCLAGKIPR*
Ga0126382_112559171	3300010047	Tropical Forest Soil	MRQFILPAMLAVAATTGLSTPSAAQQPYCYPGRGCVPMTQASYNACFNLALARGESVAWGERKRLDWFIYQCLAGRIPR*
Ga0127503_112617233	3300010154	Soil	AGDSKEAFMRQFILPAVLAMAAVTGVASSSVAQQPFCIAGRGCVPMTQASYNTCFNLALARGESAAWGERHKLDWFIYQCLAGRIPR*
Ga0126376_116713192	3300010359	Tropical Forest Soil	MRQFILPAILVVAAATGTSTPSAAQQRFCIAGRGCVPVTDASYNACFNLALARGESAAWGERHKLD*
Ga0126372_100394562	3300010360	Tropical Forest Soil	MRQFILPAMLAVAATTGFSTPSAAQQFCIACCGCVSVTDASYTACFNLALARGESAAWGERHKLDWFIFQCLAGRIRR*
Ga0126372_109851311	3300010360	Tropical Forest Soil	MRQLFLMTILTVGAVTDFSTPSVAAQPFCVRGRGCVPTTQATYNSCFQLGLARGESVTVGEWRNFQRFIYQCLAGRIPR*
Ga0126372_123427841	3300010360	Tropical Forest Soil	MRQFILPAVLAIAAVTSVATPSVAQQQPYCIAGRGCVPMTPASYNACFNLALARGESVAYGERHKLDWFIYQCLAGRIRR*
Ga0126372_124831831	3300010360	Tropical Forest Soil	TGLATTSVAQERFCIAGRGCVPVTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0126377_100096758	3300010362	Tropical Forest Soil	MRLFILPAMLAIAATTGLSTPSAAQQPYCYPGYGCVPMTQASYNACFNLALARGESVAWGERKRLDWFIYQCLAGRIPR*
Ga0126377_100638072	3300010362	Tropical Forest Soil	MRQFILPAVLATAAVAGLATPTVAQQPFCIAGRGCVPMTQATYNACFNLALARGESVAWGERHKLDWFIYQCLAGKIRR*
Ga0126377_100803502	3300010362	Tropical Forest Soil	MRQFILMTILAVSVVTDFSTPSAAAQPVCIRGSGCVPATQPSYNSCFQLALARGESVTVGESRRLRWFIYQCLAGRIPM*
Ga0126377_101427333	3300010362	Tropical Forest Soil	MRQFILPAVLAIAAVTGVATPSVAQQQPYCIAGRGCVPMTPASYNACFNLALARGESVAYGERHKLDWFIYQCLAGRIRR*
Ga0126377_112706772	3300010362	Tropical Forest Soil	MRQFILPAMLVVAATTGFSTPSAAQQFCIAGRGCVPMTDASYNACFNLALARGESAAWGERHKLDWFIFQCLAGRIPR*
Ga0126377_117650551	3300010362	Tropical Forest Soil	ILPAVLATATVAGLSTPSFAQNQFCVRGRGCVPVTDASYNACFNLALARGESVAWGERRRLDWFIYQCLAGRIPR*
Ga0126377_133423531	3300010362	Tropical Forest Soil	MRQFILPAMLVVAATTGLSTPSAAQQPYCYPGHGCVPMTQASYNKCFNLALARGESAAWGERRRLDWFIYQCLAGRIPR*
Ga0126379_130799861	3300010366	Tropical Forest Soil	LPAILVVAAATGTSTPSAAQQRFCIAGRGCVPMTDAKYNACFNLALARGESSAWGERHKLDWFIYQCLAGRIPR*
Ga0126383_124674611	3300010398	Tropical Forest Soil	MRQFILPAVLVTATVAGLSTPSVAQNKYCVRGRGCVPVTQASYNACFNLALARGESAAWGERRRLDWFIYQCLAGRIPR*
Ga0134123_116164361	3300010403	Terrestrial Soil	MRQFILPAVLATATIAGFSTPSIAHQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0154003_10360982	3300012081	Attine Ant Fungus Gardens	MRQFILPAVLATAAVTGLATPSVAQQPFCVAGRGCVPMTQASYNACFNLALARGESVAWGERKKLDWFIYQCLAGRIPR*
Ga0137383_108241232	3300012199	Vadose Zone Soil	MRQFILPAVLATAAITGLSTPSAAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIP*
Ga0137382_110983331	3300012200	Vadose Zone Soil	MLRFILATILAVAAVTDFPTPSAAQRPFCHRGRACVPATQATYNSCFELALARGESVAWRERRRLEWFIYQCLAGRIPR*
Ga0137380_107716072	3300012206	Vadose Zone Soil	MRQFILPAVLATAAVTGLATPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0137381_117286951	3300012207	Vadose Zone Soil	MRQVILPAILAATAVAGLSTSSDAQPQCIRGRGCVPATPATYNECYNLAIKRGESALWGERKRLDWFIYQCLAGRIPR*
Ga0137379_102255563	3300012209	Vadose Zone Soil	MRQFILPAVLATAAVTGLSTPSAAQQPFCIAGRGCVPMTQESYNACFNLALARGESVAWGERHKLDWFIYQCLAGRIPR*
Ga0137378_111183291	3300012210	Vadose Zone Soil	MRQFILPAVLATAAITGLSTPSAAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0137377_101968283	3300012211	Vadose Zone Soil	MRQFILPAVLATAAITGLSTPSAAQQPFCIAGRGCVPMTQESYNACFNLALARGESVAWGERHKLDWFIYQCLAGRIPR*
Ga0150985_1051811191	3300012212	Avena Fatua Rhizosphere	MRQFILPAVLATAAVIGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIPR*
Ga0150985_1164152961	3300012212	Avena Fatua Rhizosphere	STEALMRQFILSAVLATAAVIGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDFFIYQCLAGKIRR*
Ga0137387_101361541	3300012349	Vadose Zone Soil	MRQFILPAVLATAAVTGLSTPSAAQQPFCIAGRGCVPMTQESYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0137386_104009172	3300012351	Vadose Zone Soil	MRQFILPAVLATAAVTGLATPSVAQQPFCIAGRGCVPMTQESYNACFNLALARGESVAWGERHKLDWFIYQCLAGRIRR*
Ga0137375_101006264	3300012360	Vadose Zone Soil	MNRMASARDREGAKGDSEEALMRQFILPAVLATAAVSGLSTPSSAQQQFCVHGRGCVPVTQASYNACFNLALARGESAAWGERRRLDWFIYQCLAGRIPR*
Ga0137361_116543431	3300012362	Vadose Zone Soil	MRQFILPAVLATAAITGLSTPSAAQQPFCIAGRGCVPMTQATYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR*
Ga0150984_1040004373	3300012469	Avena Fatua Rhizosphere	MRQFILSAVLATAAVIGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDFFIYQCLAGKIRR*
Ga0137358_107263531	3300012582	Vadose Zone Soil	MRQFILSAVLATAAVSGLSTPSSAQQQFCVHGRGCVPVTEASYNACFNLALARGESAAWGERRRLDWFIYQCLAGRIPR*
Ga0137397_100443562	3300012685	Vadose Zone Soil	MRQFILPAILAVAAVAGLSTPSSAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIR*
Ga0137413_102553102	3300012924	Vadose Zone Soil	MRRFILSAVLATAAVSGLSTPSSALQQFCVHGRGCVPVTEASYNACFNLALARGESAAWGERRRLDWFIYQCLAGRIPL*
Ga0137419_101969251	3300012925	Vadose Zone Soil	MREFILPAVLATAAVTGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCPAGRIPL*
Ga0137404_105135612	3300012929	Vadose Zone Soil	LLVAAQVNRMAMSRDGERAGDSQEALMRQFILPAVLATAAVIGLATPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIRR*
Ga0137407_101736312	3300012930	Vadose Zone Soil	MRQFILPAILAATAVTGLSTPSDAQQAQCIRGRGCVPATQMTYNACYNLAIARGESPLWGEHKRLDWFIYQCLAGKIPR*
Ga0157375_104554131	3300013308	Miscanthus Rhizosphere	MRQFILPAVLATVAVTGLATPSVAQQPFCIAGRGCVPMTQATYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR*
Ga0137412_101919561	3300015242	Vadose Zone Soil	MRQFILPAVLATAAATGLATPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRRLDWFIYQCLAGRIPL*
Ga0132257_1024599812	3300015373	Arabidopsis Rhizosphere	LMRQFILPAVLATAAVTGLATPSVAEQPFCIPGRGCVPMTQASYNACFNLALARGESVAWGERKKLDWFIYQCLAGRIR*
Ga0184608_100056375	3300018028	Groundwater Sediment	MRQFILPAILAVAAVAGLSTPSSAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIR
Ga0184621_101822341	3300018054	Groundwater Sediment	MRQFILPAILAVAAVAGLSTPSSAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIRR
Ga0184632_103175402	3300018075	Groundwater Sediment	MRQFILPTILAVAAVTGFSTPSAAQQQFCVHGRGCVPVTDASYNRCFNLALARGESVAWGERRRLDWFIYQCLAGRIPR
Ga0184625_102567192	3300018081	Groundwater Sediment	MRQFILPTIVAVAAVTGFSTPSAAQQQFCVHGRGCVPVTEASYNRCFNLALARGESVAWGERRRLDWFIYQCLAGRIPR
Ga0066655_112609381	3300018431	Grasslands Soil	MRRFILPAILATVAIAGLSTPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRK
Ga0066662_110455722	3300018468	Grasslands Soil	MRQFILPAMLAVAAATTFSTPSAAQQFCIGGRGCVPVTDASYNACFNLALARGESVAWGERRKLDWFIFQCLAGRIPR
Ga0066662_122152431	3300018468	Grasslands Soil	MRRFILPAILATAAVAALSTSSAAQQQFCVRGRGCVPVTQASYNACFNLALARGESAAWGERHRLDWFIYQCLAGRIPR
Ga0193730_11112341	3300020002	Soil	MRQFILPAVLATAAVTGLATPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIRR
Ga0179594_100059633	3300020170	Vadose Zone Soil	MRQFILPAVLATAAVTGLAIPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR
Ga0179594_101553302	3300020170	Vadose Zone Soil	MREFILPAVLATAAVTGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIPR
Ga0209438_10218493	3300026285	Grasslands Soil	MRQFILPAVLATATVAGLVTPSVAQQPFCVAGRGCVPMTQASYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIRR
Ga0208981_10444253	3300027669	Forest Soil	MRQFILPGVLATAAITGLATPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIPR
Ga0209488_101115885	3300027903	Vadose Zone Soil	MRRFILSAVLATAAVSGLSTPSSALQQFCVHGRGCVPVTEASYNACFNLALARGESAAWGERRRLDWFIYQCLAGRIP
Ga0207428_105196051	3300027907	Populus Rhizosphere	MRQFILPAVLATAAVTGLATPSVAEQPFCIPGRGCVPMTQASYNACFNLALARGESVAWGERKKLDWFIYQCLAGRIR
Ga0268264_120318442	3300028381	Switchgrass Rhizosphere	QFILSAVLATATMAGFSTPSIAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR
Ga0137415_100990534	3300028536	Vadose Zone Soil	MRQFILPAVLATAAITGLSTPSAAQQPFCIAGRGCVPMTQATYNACFNLALARGESAAWGERRKLDWFIYQCLAGRIPR
Ga0308201_103337322	3300031091	Soil	MRQFILPAVLATAAIAGLSTPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIR
Ga0308204_101752661	3300031092	Soil	ALMRQFILSAVLGTAAVIGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDFFIYQCLAGKIRR
Ga0308197_100430512	3300031093	Soil	MRQFILSAVLGTAAVIGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDFFIYQCLAGKIRR
Ga0307499_102039701	3300031184	Soil	MRQFILPAVLAMAAVTGVASSSVAQQPFCIAGRGCVPMTQASYNTCFNLALARGESAAWGERHKLDWFIYQCLAGRIPR
Ga0307468_1000119932	3300031740	Hardwood Forest Soil	MRQFILPAMLAVAATTGFSTPSAAQQPYCYPGYGCVPMTQASYNACFNLALARGESVAWGERKRLDWFIYQCLAGRIPR
Ga0307468_1005517741	3300031740	Hardwood Forest Soil	MRQFILPAVLATVAVTGLATPSVAQQPFCIAGRGCVPMTQATYNACFNLALARGESVAWGERRKLDWFIYQCLAGRIPR
Ga0307471_1026054261	3300032180	Hardwood Forest Soil	MRPFILPAMLAVAATTGLSTPSAAQQPYCFRGHGCVPMTQASYNACFNLALARGESVAWGERHRLDWFIYQCLAGRIPR
Ga0307472_1015599941	3300032205	Hardwood Forest Soil	SQEALMRQFILPAVIATAAVTSLATPSVAQQFCIAGRGCVPVTDASYNACFNLALARGESVSRGERRRLDWFIYQCLAGRIPFGESRSHYR
Ga0370548_057809_227_466	3300034644	Soil	MRQFILSAVLATAAVIGVASSSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDFFIYQCLAGKIRR
Ga0370546_044872_92_328	3300034681	Soil	MRQFILPAVLATAAITGLSTPSVAQQPFCIAGRGCVPMTQASYNACFNLALARGESAAWGERHKLDWFIYQCLAGRIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081137

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences