Metagenome / Metatranscriptome Family F081099

Basic Information
Family ID	F081099
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	50 residues
Representative Sequence	TQDSAAAPVFDPRTRQFRHGGIRNLPVAIFQLKLRKALEEKTP
Number of Associated Samples	80
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	7.41 %
% of genes near scaffold ends (potentially truncated)	21.05 %
% of genes from short scaffolds (< 2000 bps)	21.93 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Unclassified (76.316 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (48.246 % of family members)
Environment Ontology (ENVO)	Unclassified (43.860 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.58% β-sheet: 8.45% Coil/Unstructured: 61.97%
Feature Viewer

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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00413	Peptidase_M10	31.58
PF07715	Plug	0.88
PF12811	BaxI_1	0.88
PF03703	bPH_2	0.88
PF12680	SnoaL_2	0.88
PF02055	Glyco_hydro_30	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	31.58
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.88
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	0.88
COG5520	O-Glycosyl hydrolase	Cell wall/membrane/envelope biogenesis [M]	0.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.32 %
All Organisms	root	All Organisms	23.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.32 %
cellular organisms	root	All Organisms → cellular organisms	23.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.32 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.30 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007265\|Ga0099794_10677051	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300009038\|Ga0099829_11107456	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300009038\|Ga0099829_11681487	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300009089\|Ga0099828_11338303	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300010376\|Ga0126381_100381323	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300011270\|Ga0137391_11132352	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300011270\|Ga0137391_11361219	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300011271\|Ga0137393_11667403	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300012189\|Ga0137388_11273694	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300012189\|Ga0137388_11548464	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300012198\|Ga0137364_11162444	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300012202\|Ga0137363_11323974	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300012357\|Ga0137384_10019379	All Organisms → cellular organisms → Bacteria	5541	Open in IMG/M
3300012363\|Ga0137390_11306863	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300012363\|Ga0137390_11389479	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300012924\|Ga0137413_11648444	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300012927\|Ga0137416_11277112	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
3300017943\|Ga0187819_10624431	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300020581\|Ga0210399_11259242	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300026496\|Ga0257157_1026975	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300026551\|Ga0209648_10025866	All Organisms → cellular organisms → Bacteria	5130	Open in IMG/M
3300026551\|Ga0209648_10753362	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300026551\|Ga0209648_10809170	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300026552\|Ga0209577_10377223	All Organisms → cellular organisms → Bacteria → Acidobacteria	1032	Open in IMG/M
3300027846\|Ga0209180_10485570	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300030991\|Ga0073994_10065211	All Organisms → cellular organisms → Bacteria → Acidobacteria	611	Open in IMG/M
3300032174\|Ga0307470_10185661	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.86%
Aquatic	Environmental → Aquatic	6.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.86%
Freshwater	Environmental → Aquatic → Freshwater	3.51%
Sediment	Environmental → Aquatic → Sediment	2.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.09%
Loam	Environmental → Terrestrial → Soil → Loam	6.14%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.39%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.88%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	48.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.02%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.63%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.63%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_101306071	3300002914	Grasslands Soil	GIERVTQDSAAAPIFDPRMRQFQHGGIRNLPVAIFQLKLRKALRRETP*
Ga0062595_1016330982	3300004479	Soil	ELSGVETVTQDSALAPIFDPRTRTFRHGGIRKLPTPIFQLKLRKALERGN*
Ga0066672_101689451	3300005167	Soil	QDSAAAPLFDPRTRRFQHGGIRNLPVGIFQLKLRKALQEKMP*
Ga0066684_104782261	3300005179	Soil	WSQGAFRIRKNSASEVETVTQDSANAPLFDPVSRRFRHGGVRNLPVSVFQLKLKRALERQ
Ga0066388_1010578221	3300005332	Tropical Forest Soil	ETVTQDSATASLFDPQRHEFVREGVRNLPVAVFQMKLRRALEEGVR*
Ga0070699_1011608211	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TGVETVTQDSAAAPVFDPRTHEFRRSGIHNLPMASFQMKLRKALEAKTL*
Ga0070730_105243412	3300005537	Surface Soil	LELVTQDSASAPLFDPITRQFRHGGVRNLPVPVFQLKLKRAIERQ*
Ga0066708_103447802	3300005576	Soil	GTESVTQDSATASVFDPGTREFRRHGIRNLPVPLFRVKLSRALGPGK*
Ga0066691_103488871	3300005586	Soil	ETVTQDSAMAPLFDPLTRQFRHGGIRNLPVAIFQLKLRKVLEEKTP*
Ga0066706_111829352	3300005598	Soil	FRIARDAHTGVELVTQDSAMAPIFDPRTRQFRHGGIRNLPVTIFQLKLKKALQQETP*
Ga0070762_110735432	3300005602	Soil	GTESVTQDSAAASVFDPQRREFRRGGIRNLPVAIFQVRLRKALEGKN*
Ga0080027_101826572	3300005993	Prmafrost Soil	LESVTQDSASASIFDRQTRELRRTGIRNLPIAIFQLKLRKALL*
Ga0075028_1009026311	3300006050	Watersheds	FRIARDAQTGAERVTQDSAAAPVFDPRTRQFRHAGVRNLPVAIFQLKLRKALQQETP*
Ga0075029_1011995362	3300006052	Watersheds	ETVTQDSAAAPIFDPRTRQFRHGGIRNLPVAIFQLKLRKALQQETP*
Ga0075015_1005170211	3300006102	Watersheds	TFRISREPGTGVERVTQDSASAPVFDLQTRQFQHGGIRNLPVALFQLKLRKALKQE*
Ga0066660_101952033	3300006800	Soil	EMVSQDSAVAPLFDPVTRRFRHGGIRNLPVPVFELKLKRAFER*
Ga0099791_106734062	3300007255	Vadose Zone Soil	ARDARTGVETVTQDAAAAPIFDPRTREFRRSGIRNLPVASFQLKLRKALEEKTP*
Ga0099793_100399511	3300007258	Vadose Zone Soil	GEPYRVLGWAQGTVRVARNADTGTETVTQDSALAPIFDPRTRTFRHGGIRNLPVGIFQLKLRRALEETN*
Ga0099794_106770512	3300007265	Vadose Zone Soil	ARDARTGVETVTQDSAAAPVFDPRTHEFQRTGIRNLPVASFQMKLRKALEVKTP*
Ga0066710_1010344012	3300009012	Grasslands Soil	SQGTFRIMKDSRGIERVTQDSAAAPLFDPRTRRFQHGGIRNLPVAIFQLKLRKALEEKMP
Ga0066710_1028907212	3300009012	Grasslands Soil	ERVTQDSAAAPLFDPRTRRFQHGGIRSLPVAIFQLKLRKAREEKMP
Ga0099829_102517851	3300009038	Vadose Zone Soil	QDSAAAPVFDPRTHQFRHGGIRNLPVAIFQLKLRKALQQETP*
Ga0099829_105017832	3300009038	Vadose Zone Soil	FRIARDPQTGVERVTQDSAAVPVFNPRTRQFRHGGIRNLPVAVFQLKLRKALEEKTP*
Ga0099829_111074561	3300009038	Vadose Zone Soil	FRIARDPQTGVERVTQDSAAVPVFNPRTRQFRHGGIRNLPVAIFQLKLRKALEEKTP*
Ga0099829_116814872	3300009038	Vadose Zone Soil	FDPQTHRFQHGGIRNLPLAIFQLKLKKALEQSAP*
Ga0099830_101558461	3300009088	Vadose Zone Soil	QTGVERVTQDSAALPIFDPRARQFRHGGIRNLPVAIFQLKLRKALQQEKP*
Ga0099828_113383031	3300009089	Vadose Zone Soil	AAPVFDPRTRQFRHGGIRNLPVAIFQLKLRKALEEKTP*
Ga0066709_1018181692	3300009137	Grasslands Soil	SQGTFRIMKDSRGIERVTQDSAAAPLFDPRTRRFQHGGIRSLPVAIFQLKLRKAREEKMP
Ga0099796_102696361	3300010159	Vadose Zone Soil	RNADTGNESVTQDSALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALAQEN*
Ga0126381_1003813233	3300010376	Tropical Forest Soil	VATVTQDSAATAVFDSQTRRFVHSGIRNLPVLTFQLKLKKALEGAK*
Ga0137392_100199181	3300011269	Vadose Zone Soil	IARDPRTGMETVTQDSAAAPLFEPRTRKFRHGGIRNLPLAIFQLKLRKALEEKTF*
Ga0137391_107142871	3300011270	Vadose Zone Soil	RDPRTGVERVTQDSAAAPIFDPLTRQFRHGGIRNLPVAIFQLKLRKALEEKTP*
Ga0137391_111323521	3300011270	Vadose Zone Soil	ALAPIFDPRTRTFRHGGIRNLPVGIFQLKLRRALEETVEKN*
Ga0137391_113612191	3300011270	Vadose Zone Soil	PVFNPRTRQFRHGGIRNLPVAIFQLKLRKALEEKTP*
Ga0137391_114674412	3300011270	Vadose Zone Soil	FRITRDPRTGVERVTQDSAALPVFDPGTRQFRHGGIRNLPVAIFHLKLRKALQQETP*
Ga0137393_116674031	3300011271	Vadose Zone Soil	PVFDPGTRQFRHGGIRNLPVSIFQLKLRKALQQETP*
Ga0137388_105577852	3300012189	Vadose Zone Soil	LPVFDPGTRQFRHGGIRNLPVSIFQLKLRKALQQETP*
Ga0137388_106049021	3300012189	Vadose Zone Soil	TVTQDSAMMPIFDPRTRTFRHGGIRNLPVTIFQLKLRRALEDRN*
Ga0137388_109516522	3300012189	Vadose Zone Soil	RISRNEQSGVETVTQDSALAPIFDPRTRTFRHGGIRKLPVAIFQLKLRKALEDRN*
Ga0137388_112736942	3300012189	Vadose Zone Soil	FRIVRNEQSGVETVTQDSAMMPIFDPRTRTFRHGGIRNLPVTIFQLKLRRALEDRN*
Ga0137388_115484642	3300012189	Vadose Zone Soil	VFDPRTRQFRHSGIRNLPVAIFQLKLRKALEGTTP*
Ga0137364_111624441	3300012198	Vadose Zone Soil	REGEPFRVLGWSQGTFRIMKDSRGIERVTQDSAAVPLFDPRTRRFQHGGIRNLPVAIFQLKLRKALEEKMP*
Ga0137363_100878593	3300012202	Vadose Zone Soil	QGTFRIAKDARTGVETVTQDSAAAPVFDPRTHEFRRSGIRNLPVASFQMKLRKALEAKTQ
Ga0137363_113239741	3300012202	Vadose Zone Soil	IFDPQTRKFRHGGIRNLPVMTFREKLRKALKRVNP*
Ga0137399_100936193	3300012203	Vadose Zone Soil	SQGTFRIDRDPRTGMERVTQDSATAPVFDPRTRQFRHGGIRNLPITIFQLKLRKALEEKIP*
Ga0137399_114297481	3300012203	Vadose Zone Soil	SALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALQQQN*
Ga0137399_115768822	3300012203	Vadose Zone Soil	NESVTQDSALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALAQEN*
Ga0137362_114151862	3300012205	Vadose Zone Soil	FDPRTHEFRRSGIRNLPVASFQMKLRKALEAKTQ*
Ga0137378_108351871	3300012210	Vadose Zone Soil	TQDSAMAPLFDPRTRQFRHGGVRNLPVAIFQLKLRKALEEKTP*
Ga0137384_100193791	3300012357	Vadose Zone Soil	ETVTQDSAAAPLFDPQAHRFVHAGIRNLPIAIFQMKLRKALQGELAR*
Ga0137360_106242731	3300012361	Vadose Zone Soil	QDSALAPIFDPRTRTFRHGGIRNLPVGIFQLKLRKALQQEN*
Ga0137360_112182891	3300012361	Vadose Zone Soil	RIAKDARTGVETVTQDSAAAPVFDPRTHEFQRTGIRNLPVASFQMKLRKALEVKTP*
Ga0137390_113068632	3300012363	Vadose Zone Soil	RDPWTGVERVTQDSAALPVFDPGTRQFRHGGIRNLPVAIFQLKLRKALQQETP*
Ga0137390_113894791	3300012363	Vadose Zone Soil	ATIPVFDRQTRRFIHSGIRNLPIAAFQLELRKALDGSMP*
Ga0137358_100214381	3300012582	Vadose Zone Soil	NAPIFDPRTRTFRHGGIRNVPVTIFQLKLRRALEDEN*
Ga0137358_101662572	3300012582	Vadose Zone Soil	FRIARSADTGNESVTQDSALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALAQEN*
Ga0137358_102824571	3300012582	Vadose Zone Soil	NADTGNETVTQDSANAPIFDPRTRTFRHGGIRHLPVAIFQLKLRKALEREN*
Ga0137358_104064161	3300012582	Vadose Zone Soil	QGTFRVARNADSGVETVTQDSANAPIFDPRTRTFRHGGIRNLPVAIFQLKLRRALEGKPERN*
Ga0137398_106285821	3300012683	Vadose Zone Soil	PDTGNESVTQDSALLPLFDPRTRTFRHGGVRKLPVEIFQLKLRKALQQQN*
Ga0137398_110126171	3300012683	Vadose Zone Soil	NADTGNESVTQDSALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALQ*
Ga0137413_116009391	3300012924	Vadose Zone Soil	TQDSALLPLFDPRTRTFRHGGIRKLPLEIFQLKLRKALQQEN*
Ga0137413_116484441	3300012924	Vadose Zone Soil	FRIARDPRTGLERVTQDSAAAPVFDPRTRQFRHGGIRNLPVEIFQLRLRKVLEEKTP*
Ga0137413_117273451	3300012924	Vadose Zone Soil	YTGNESVTQDSALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALAQEN*
Ga0137419_104504992	3300012925	Vadose Zone Soil	QDSATAPVFDPRTRQFRHGGIRNLPVAIFRLKLRKALEEKTP*
Ga0137419_109183322	3300012925	Vadose Zone Soil	FRIARNADTGNESVTQDSALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALAQEN*
Ga0137416_112771122	3300012927	Vadose Zone Soil	ALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALAQEN*
Ga0137407_104194972	3300012930	Vadose Zone Soil	GEEAYVFLWSREGEPRRILGWSQGTFHITKDARTGVKTVTQDSAAAPVFDPRTHEFQRTGIRNLPVASFQMKLRKALEVKTP*
Ga0137407_121581511	3300012930	Vadose Zone Soil	DSAMAPIFDPRTRTFRHGGIRNLPVGIFQLKLRRALEQQN*
Ga0137412_111114492	3300015242	Vadose Zone Soil	PFRVLGWSQGAFRIARDPRTGLERVTQDSAAAPVFDPRTRQFRHGGIRNLPVEIFQLRLRKVLEEKTP*
Ga0137403_104879061	3300015264	Vadose Zone Soil	TGAETVTQDSAAAPVFDPRTREFQRNGIRNLPVASFQLKLRKALEEKTQ*
Ga0187818_100271223	3300017823	Freshwater Sediment	FRIARDARTGLQLVTQDSAAAPIFDPQTRQFRHGGVRNLPVQAFQWKLRKALQQETP
Ga0187819_101438271	3300017943	Freshwater Sediment	QGTFRIARDARTGLQLVTQDSAAAPIFDPQTHQFRHGGVRNLPVQVFQWKLRKALQQETP
Ga0187819_106244312	3300017943	Freshwater Sediment	FRIARDARTGLQLVTQDSAAAPIFDPQTRQFRHGGVRNLPVQAFQRKLRKALQQETP
Ga0187871_108790861	3300018042	Peatland	DRATGVESVTQDSAAAAVFDPETRSFRRGGIRNVPVAVFQIKLRKALEDP
Ga0187772_106812682	3300018085	Tropical Peatland	RIRRDARTSLETVTQDSAGAALFDPQTRSFHHGGIRNWPVTVFQEKLRKILRQGR
Ga0187772_107903431	3300018085	Tropical Peatland	QGTFRIRRDPRTGLETVTQDSAGTPIFDPMTRQFRHGGVRNLPLTVFQLKLKRALEGERKQGQ
Ga0179594_102328412	3300020170	Vadose Zone Soil	AAAPVFDPRTHQFRHGGIRNLPVAIFQLKLRKALEEKTP
Ga0179594_102342782	3300020170	Vadose Zone Soil	DARTGAEIVTQDSAAAPVFDPRTHEFRRSGIRNLPVASFQMKLRKALEAKTQ
Ga0210407_101057653	3300020579	Soil	DSALLPLFDPRTRSFRHGGIRNLPVGIFQLKLRKALEQQN
Ga0210407_106297282	3300020579	Soil	TQDSAAAPVFDPRTRQFRHGGIRNLPVAIFQLKLRKALEEKTP
Ga0210403_107081771	3300020580	Soil	ARDARTGVETVTQDSAGVGVFDPRTRKFQRGGIRDLPVAAFELKLRKTLENKTE
Ga0210399_112592422	3300020581	Soil	QGTFRIGRDPRTGVERVTQDSAASPVFDPRTRQFRHGGIRNLPIVIFQLKLRKALEEKTP
Ga0210405_112506051	3300021171	Soil	GTFRIARNGVTGMESVTQDSAAASVFDPQRREFRHGGIRNLPVAIFQLRLRKALEGKN
Ga0210387_103344821	3300021405	Soil	PDGVFHILGWSQGAFRIRRDKSTGLELVTQDSASAPIFDPVTKEFRHGGVRNLPVPVFQLKLKRALERQ
Ga0210383_103020211	3300021407	Soil	TQDSAAASVFDPQRREFRREGIRNLPVAIFQLRLRKALEEKN
Ga0210383_114098092	3300021407	Soil	NGVTGMESVTQDSAAASVFDPQRREFRRGGIRNLPVAIFQLRLRKALEEKN
Ga0210394_110924231	3300021420	Soil	SQGTFRIARNGVTGMESVTQDSAPASVFDPQRREFRREGIRNLPVAIFQLRLRKALEEKN
Ga0210409_102180702	3300021559	Soil	IIDPRTRQVRHSGVRRLPVAVFQLKLRKALQEETP
Ga0207664_102855972	3300025929	Agricultural Soil	ALAPIFDPRTRSFRHGGIRNLPLPIFQLKLRKALEQPN
Ga0209154_10887672	3300026317	Soil	WSQGTFRIMRDSRGIERVTQDSAAAPLFDPRTRRFQHGGIRNLPVGIFQLKLRKALQEKM
Ga0209267_11344462	3300026331	Soil	WSQGTFRIMKDSRGIERVTQDSAAAPLFDPRTRRFQHGGIRSLPVAIFQLKLRKALEEKM
Ga0257157_10269753	3300026496	Soil	VFDPRTRQFWHGGIRNLPVAIFQLKLRKALEEKTP
Ga0209648_100258668	3300026551	Grasslands Soil	GLERVTQDSAAAPVFDSRTRQFRHGGIRNLPVAIFQLKLRKALEEKTP
Ga0209648_107533621	3300026551	Grasslands Soil	VPVFNPRTRQFRHGGIRNLPVAVFQLKLRKALEDKSP
Ga0209648_108091701	3300026551	Grasslands Soil	PVFNPRTRQFRQGGIRNLPVAIFQLKLRKALEDKSP
Ga0209577_103772231	3300026552	Soil	FRVLGWSQGTFRIMKDSRGIERVTQDSAAAPLFDPRTRRFQHGGIRNLPVGIFQLKLRKALEEKMP
Ga0208365_10314932	3300027070	Forest Soil	QGTFRIARNGVTGMESVTQDSAGASVFDPQRREFRRGGIRNLPVAIFQLRLRKALEENN
Ga0209076_11453301	3300027643	Vadose Zone Soil	APIFDPRTRTFRHGGIRNLPVGIFQLKLRRALEETN
Ga0209388_10717352	3300027655	Vadose Zone Soil	VETVTQDSAAAPVFDPRTHEFRRSGIRNLPVASFQMKLRKALEAKIQ
Ga0208990_10796421	3300027663	Forest Soil	DTGNESVTQDSALLPLFDPRTRTFRHGGIRKLPVEIFQLKLRKALAQEN
Ga0209180_104855701	3300027846	Vadose Zone Soil	NADTGTETVTQDSALAPIFDPRTRTFRHGGIRNLPVGIFQLKLRKALEQAN
Ga0209166_103410692	3300027857	Surface Soil	IRKDQVTGLELVTQDSASAPLFDPITRQFRHGGVRNLPVPVFQLKLKRAIERQ
Ga0209167_105243221	3300027867	Surface Soil	DSAAAPLFDPVSRQFRPGGVRNLPLAVFQLKLKKALEAAP
Ga0209380_104384192	3300027889	Soil	ARDARTGLETVTQDSAATPMFDLRTRQFRHGGIRNLPVAIFQLKLRKALERDAP
Ga0307504_100540331	3300028792	Soil	EQSGVETVTQDSAMMPIFDPRTRRFRHGGIRNLPVTIFQLKLRRALEDRN
Ga0073994_100652111	3300030991	Soil	TVTQDSANAPIFDPRTRTFRHGGIRNLPVGIFQLKLRRALEEKN
Ga0307474_104863761	3300031718	Hardwood Forest Soil	QDSALLPLFDPRTRTFHHGGIRNLPVGLFQLKLRKALQQQN
Ga0307475_102278223	3300031754	Hardwood Forest Soil	GTFRISRDPRTGAERVTQDSAAAPIFDPLTRQFRHGGIRNLPVAIFQLKLRKALEEKTP
Ga0307475_104618772	3300031754	Hardwood Forest Soil	ARTGVERVTQDSAAAPVFDPATRQFWHGGIRNLPVAIFQLKLRKALEEQTR
Ga0307478_100258944	3300031823	Hardwood Forest Soil	MAIFDPITRQFRHGGISNLPLAIFQLKLRRALEESN
Ga0307479_101584133	3300031962	Hardwood Forest Soil	DPQTGVERVTQDSAAAPIFDPLTRQFRHGGIRNLPVAIFQLKLRKALQGETP
Ga0307479_109506042	3300031962	Hardwood Forest Soil	DSAAAPIFDPRTHQFRHGGVRRVPVAIFQLKLRKALQQETQ
Ga0307479_109559812	3300031962	Hardwood Forest Soil	TETVTQDSALLPLFDPRTRTFRHGGIRDLPVGIFQLKLRKALQHEN
Ga0307470_101856612	3300032174	Hardwood Forest Soil	MENVTQDSAAASVFDPQTRQFRRGGIRNLPVAVFQLRLRKALEEKN

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081099

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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