Basic Information | |
---|---|
Family ID | F081057 |
Family Type | Metagenome |
Number of Sequences | 114 |
Average Sequence Length | 42 residues |
Representative Sequence | FTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA |
Number of Associated Samples | 105 |
Number of Associated Scaffolds | 114 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 1.75 % |
% of genes near scaffold ends (potentially truncated) | 93.86 % |
% of genes from short scaffolds (< 2000 bps) | 89.47 % |
Associated GOLD sequencing projects | 101 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.51 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (50.877 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.175 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.439 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.123 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 32.84% β-sheet: 0.00% Coil/Unstructured: 67.16% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Peatland Freshwater Sediment Soil Vadose Zone Soil Tropical Forest Soil Bulk Soil Grasslands Soil Grass Soil Peatlands Soil Soil Agricultural Soil Arctic Peat Soil Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Bog Forest Soil Bog Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Palsa Arabidopsis Rhizosphere Corn Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
FA3_04252150 | 2170459023 | Grass Soil | SDTDTRFRDLGPDWHDRLNPQRRARSLRHELERLTGQKVTLTPATGAPAA |
Ga0066398_100027531 | 3300004268 | Tropical Forest Soil | AHFSDLGPDWHDRIAPLRRKRQLIAELERLSGRKVLLQEAA* |
Ga0062595_1026907871 | 3300004479 | Soil | PGARFTDLGPGWHDRLTPLRRRRQLIAELERLSGQKVILQEAA* |
Ga0066395_103016892 | 3300004633 | Tropical Forest Soil | FTDLGPDWHDRLAPIRRKRQLIAELERLSGKKVLLQEEAA* |
Ga0066676_102277294 | 3300005186 | Soil | FADLGPDWHDRIAPLRRKRQLIAELERLSGKKVTLQEAAA* |
Ga0070714_1004452393 | 3300005435 | Agricultural Soil | DPAAHFTDLGPGWHDRLAPQRRKRQLITELERLSGQKVTLTSAT* |
Ga0070713_1019688012 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | LFTVAAATGSDWHDRIASLRRKRQLIAELERLSGKKVLLQETAA* |
Ga0070711_1016618181 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | ARFTDLGPNWHDRITPIRRKRQLIAEPERLSGRKVLLQEEAAT* |
Ga0070699_1011321601 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | SDPGTRFTDLGPYWHDHLAPLRRKRQLIAELERLSGMKVTLQQPA* |
Ga0066697_106392102 | 3300005540 | Soil | FTDLGPDWHDRLAPQRRKRQLIAELERLSGKKVLLQQETAA* |
Ga0070762_103023112 | 3300005602 | Soil | TDLGPDWHDRLTPLRRKHHLIAELERLSGKKVTLHDAS* |
Ga0066905_1012773793 | 3300005713 | Tropical Forest Soil | GPDWHDRLAPLRRKRQLVAELERLSGKKVVLQEAAA* |
Ga0079221_101896741 | 3300006804 | Agricultural Soil | LLSDPGARFTDLGPDWPDRLAPIRRKRQLIAELERLSGKKVVLQEEAAA* |
Ga0075426_106585222 | 3300006903 | Populus Rhizosphere | FTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA* |
Ga0079219_121095531 | 3300006954 | Agricultural Soil | AAHFTDLGPYWHDRIAPLRRKRQLIAELERLSGKKVLLEDAAA* |
Ga0099829_104962502 | 3300009038 | Vadose Zone Soil | DLGPDWHDRLAPQRRKRQLITELERLSGQKVTLTNAA* |
Ga0111539_111084311 | 3300009094 | Populus Rhizosphere | DLGVDFHDRLHPQRRTHQLIRELEHLSGKKVTLHTAA* |
Ga0105247_103793932 | 3300009101 | Switchgrass Rhizosphere | PAAHFTDLGPGWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA* |
Ga0116224_103807601 | 3300009683 | Peatlands Soil | GAHFTDLGPDWHDRIAPQRRKHQLIAELERLSGKKVTLNDAA* |
Ga0126373_130825001 | 3300010048 | Tropical Forest Soil | RFTDLGPTWHDHLAPLRRKRQLIAELERLSGMKVTLQQSA* |
Ga0134080_106250161 | 3300010333 | Grasslands Soil | TDLGPDWHDRIAPLRRKRQLIAELERLSGKKVLLQQETAA* |
Ga0074045_103496792 | 3300010341 | Bog Forest Soil | FTDLGPGWHDRLAPLRRKRQLVAELERLSGKKVLLQEATA* |
Ga0126370_104510163 | 3300010358 | Tropical Forest Soil | FADLGPDWHDRLAPLRRKRQLIAELERLSGKKVLLQEAA* |
Ga0126376_102880301 | 3300010359 | Tropical Forest Soil | DLGPDWHDRLAPQRRKRQLIAELERLSGKKITLNDAA* |
Ga0126372_132195261 | 3300010360 | Tropical Forest Soil | LGPDWHDRIAPIRRKRQLIAELERLSGKKVLLQEEAA* |
Ga0126378_108083801 | 3300010361 | Tropical Forest Soil | PDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAV* |
Ga0126378_128576453 | 3300010361 | Tropical Forest Soil | DAHFSDLGPYWHDRIAPLRRKRQLIAKLERLSGKKVLLHDATT* |
Ga0126383_105173772 | 3300010398 | Tropical Forest Soil | FTDLGPDWHDRLAPQRRKRQLIAELERLSGKKVLLQEATA* |
Ga0126383_117493742 | 3300010398 | Tropical Forest Soil | FTDLGPDWHDRLAPQRRKRQLIAELERLSGKKVTLNDAA* |
Ga0126383_123455831 | 3300010398 | Tropical Forest Soil | HRLLSDPAAHFSDLGPDWHDRIAPLRRKRQLIAELERLSGRKVLLQEAA* |
Ga0137364_101037531 | 3300012198 | Vadose Zone Soil | FTDLGPDWHDRLVPQRRKRQLLAELERLSGKKVTLHDAA* |
Ga0137383_112089552 | 3300012199 | Vadose Zone Soil | DLGPDWHDRLAPQRRKHQLIAELERLSGKKVTLNDAA* |
Ga0137365_104142243 | 3300012201 | Vadose Zone Soil | GPDWHDRLAPLRRKRQLIAELERISGKKVTLHDAA* |
Ga0137376_114215341 | 3300012208 | Vadose Zone Soil | LSDPGAHFTDLGPDWHDRLAPQRRKRQLIAELERLSGKKVTLNDAA* |
Ga0137378_106237612 | 3300012210 | Vadose Zone Soil | FTDLGPDWHDRLAPQRRKRQLITELERLSGQKVTLTNAA* |
Ga0137377_106673031 | 3300012211 | Vadose Zone Soil | GPDWHDRLAPQRRKHQLIAELERLSGKKVTLNDAA* |
Ga0137377_110785191 | 3300012211 | Vadose Zone Soil | FTDLGPDWHDRLAPIRRKRQLIAELERLSGKKVTLQHTV* |
Ga0137375_102369703 | 3300012360 | Vadose Zone Soil | PAARFTDLGPDWHDRLAPLRPKRQLIAELERISGKKVTLHDAA* |
Ga0137390_104678272 | 3300012363 | Vadose Zone Soil | GPDWHDRLAPQRRKHQLIAELERLSGKKVTLHDAA* |
Ga0137395_109805601 | 3300012917 | Vadose Zone Soil | RFTDLGPYWHDHLAPLRCKRQLIAELERLSGMKVTLQQSA* |
Ga0137395_112946831 | 3300012917 | Vadose Zone Soil | HFTDLGPDWHDRLAPQRRKHQLIAELERLSGKKVTLHDAA* |
Ga0137394_107947721 | 3300012922 | Vadose Zone Soil | PAAHFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLNDAA* |
Ga0126369_135112981 | 3300012971 | Tropical Forest Soil | RFADLGPTWHDRLTPQRRKRQLIAELERLSGMKVTLQEAA* |
Ga0126369_135640952 | 3300012971 | Tropical Forest Soil | LSGPDARFAGLGPHWHDRIAPLRRKRQLIAELERLSGKKVILQEAAA* |
Ga0134079_100963212 | 3300014166 | Grasslands Soil | DLGPDWHDRIAPLRRKRQLIAELERLSGKKVLLQEETAA* |
Ga0182016_104374651 | 3300014493 | Bog | TDLGPDWHDRLAPLRRKHQLIAELERLSGKKVTLHDGA* |
Ga0132257_1020866752 | 3300015373 | Arabidopsis Rhizosphere | RFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA* |
Ga0182036_106273942 | 3300016270 | Soil | FADLGPDWHDRLAPLRRKRQLVVKLERLSGKKVLLQEAA |
Ga0182035_117391051 | 3300016341 | Soil | AAHFADLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA |
Ga0182040_115583361 | 3300016387 | Soil | DFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAV |
Ga0182038_110002043 | 3300016445 | Soil | ARFTDLGPDWHDRLAPIRRKRQLIAELERLSGKKVTLNDAA |
Ga0182038_117027111 | 3300016445 | Soil | PAAHFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTFHDAA |
Ga0187802_100312091 | 3300017822 | Freshwater Sediment | DPAAHFTDLGPDWHDRLAPLRRKRQLIAEIERLTGKKVTLHDAA |
Ga0187807_10047817 | 3300017926 | Freshwater Sediment | FADLGPDWHDRLAPLRRKRQLIAELERLSGKKVLLQEAA |
Ga0187824_103673821 | 3300017927 | Freshwater Sediment | TDLGPGWHDRLAPLRRKRQLIAELERLSGKKVTLQDAI |
Ga0187814_100720591 | 3300017932 | Freshwater Sediment | PAAHFTDLGPDWHDRLAPLRRKRQLIAEIERLTGKKVTLHDAA |
Ga0187879_107939062 | 3300017946 | Peatland | GPGWHDRLAPLRRKRQLVAELERLSGKKVLLQEATA |
Ga0187779_103174882 | 3300017959 | Tropical Peatland | GPDWHDRIAPLRRKRQLIAELERMSGKKVLLQDAA |
Ga0187823_101257402 | 3300017993 | Freshwater Sediment | AHFTDLGPDWHDKIAPIRRKRQLIAELERLSGKKVLLQEETAA |
Ga0187816_101583291 | 3300017995 | Freshwater Sediment | AAHFTDLGPDWHDRLAPLRRKRQLIAEIERLTGKKVTLHDAA |
Ga0187815_100934701 | 3300018001 | Freshwater Sediment | PAAHFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA |
Ga0187805_102075363 | 3300018007 | Freshwater Sediment | FADLGPDWHDRLAPLRRERQLIAELERLSGKKVLLQEAA |
Ga0187772_109973701 | 3300018085 | Tropical Peatland | ARFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLQEAAA |
Ga0210389_100315451 | 3300021404 | Soil | HFTDLGPDWHDRLTPLRRKHHLIAELERLSGKKVTLHDAS |
Ga0213879_101206661 | 3300021439 | Bulk Soil | VWLLADVGARFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLQEAAA |
Ga0210390_108831203 | 3300021474 | Soil | QLSDPDSRFADLGPDWHDRLAPLRRKRQLIAELERLSGKKVLLQEAA |
Ga0210398_101539741 | 3300021477 | Soil | SDPDSRFADLGPDWHDRLAPLRRKRQLIAELERLSGKKVLLQEAA |
Ga0126371_100540741 | 3300021560 | Tropical Forest Soil | DPDAHFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLQDDAA |
Ga0208714_10186553 | 3300025527 | Arctic Peat Soil | DTSGRLGPDWHDRLTPIRRKRQLIAELERLSGKKVLLKEEAA |
Ga0208714_10339891 | 3300025527 | Arctic Peat Soil | MTWTRFSAPTRFTDLGSDWHDRLTPIRRKRQLITELERLSGKKVVLQDEAA |
Ga0207699_100828732 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | GPHWHDRIAPLRRKRQLIAELERLSGKKVLLQEGAA |
Ga0207660_106349721 | 3300025917 | Corn Rhizosphere | PDWHDRIAPLRRKRQLITELERLSGKKVQLQEAAA |
Ga0207646_100192071 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | GPDWHARLAPLRRKRQLIAELERLSGKKVTLQDTV |
Ga0207640_120584761 | 3300025981 | Corn Rhizosphere | DLAPGWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA |
Ga0209890_100178751 | 3300026291 | Soil | GPNWHDRLAPLRRKRQLVAELERLSGKKVLLQEATA |
Ga0209177_100036761 | 3300027775 | Agricultural Soil | MGPDWHDRLAPLRRKRHFIAELERLSGKKVTLHDAA |
Ga0209465_106461502 | 3300027874 | Tropical Forest Soil | RFTDLGPTWHDHLAPLRRKRQLIAELERLSGMKVTLHQTG |
Ga0209006_110749202 | 3300027908 | Forest Soil | LSDPAAHFTDLGPDWHDRLTPLRRKHHLIAELERLSGKKVTLHDAS |
Ga0302220_100280792 | 3300028742 | Palsa | DPEARFADLGPDWHDRIAPLRRKRQLIAGLGQRMSGKKVLLQEAAV |
Ga0302234_103238581 | 3300028773 | Palsa | DLGPNWHDRLAPLRRKRQLVAELERLSGKKVLLQEATA |
Ga0302234_103479441 | 3300028773 | Palsa | LSDAAAHFTDLGRDWHDRLAPLRRKRQLIAELERLSGKKVTLNDAA |
Ga0307323_103837091 | 3300028787 | Soil | HFTDLGPDWHDRLAPQRRKHQLIAELERLSGKKVTLNDAA |
Ga0307299_103913171 | 3300028793 | Soil | PGAHFTDLGPDWHDRLAPQRRKHQLIAELERLSGKKVTLNDAA |
Ga0307312_100284484 | 3300028828 | Soil | GPDWHDRLAPLRRKRQLIAELERLSGKKVTLNDAA |
Ga0302230_102808991 | 3300028871 | Palsa | PDARFTDLGPNWHDRLAPLRRKRQLVAELERLSGKKVLLQEAAA |
Ga0311352_103354662 | 3300029944 | Palsa | DAHFTDLGPGWHDRLAPLRPKRQLVAELERLSGKKVLLQEATA |
Ga0311353_109011151 | 3300030399 | Palsa | FTDLGPNWHDRLAPLRRKRQLVAELERLSGKKVLLQEATA |
Ga0302308_107432102 | 3300031027 | Palsa | DPAAAFTDLGPDWYDRLSPLRRKRQLIAELERLSGKKVLLQEAAA |
Ga0318538_101506832 | 3300031546 | Soil | GSDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAT |
Ga0318528_102386531 | 3300031561 | Soil | DLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA |
Ga0318573_107104361 | 3300031564 | Soil | LSDPGTRFTDLGPYWHDHLAPLRRKRQLIAELERLSGMKVTLQQSA |
Ga0318515_107666372 | 3300031572 | Soil | VGPDARFADLGPDWHDRIAPLRRKRQLIAELERLSGKKVTLQEAAA |
Ga0307469_121162671 | 3300031720 | Hardwood Forest Soil | AAHFTDLGPGWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA |
Ga0318502_105355431 | 3300031747 | Soil | DDARPGNTHLGPDWHGRLAPLRRKRQLIAKLERLSGIKVNLQESAA |
Ga0318494_103333652 | 3300031751 | Soil | VRGYDDARPGNTHLGPDWHGRLAPLRRKRQLIAKLERLSGIKVNLQESAA |
Ga0318554_106285222 | 3300031765 | Soil | LGPDWHGRLAPLRRKRQLIAKLERLSGIKVNLQESAA |
Ga0318509_101695932 | 3300031768 | Soil | EARFTDLGPDWHDRLAPIRRKRQLIAELERLSGKKVTLQDAAA |
Ga0318521_102134382 | 3300031770 | Soil | VRGYYDARPGNTDLGPDWHGRLAPLRRKRQLIAKLERLSGIKVNLQESAA |
Ga0318566_104586931 | 3300031779 | Soil | ARFADPGPDWHDRIAPLHRKRQLIAELERLSGKKVTLQEAAA |
Ga0318497_104535522 | 3300031805 | Soil | YYDARPGNTDLGPDWHGRLAPLRRKRQLIAKLERLSGIKVNLQESAA |
Ga0318568_109097121 | 3300031819 | Soil | ARFTDLGPDWHDRLAPVRRKRQLIAELERLSGKKVTLQEAAA |
Ga0318495_101472852 | 3300031860 | Soil | VRGYDDARPGNTDLGPDWHGRLSPLRRKRQLIAKLERLSGIKVNLQESAA |
Ga0306919_115390491 | 3300031879 | Soil | SDPAAHFTDLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLQDTV |
Ga0306923_115359872 | 3300031910 | Soil | DPAARFTDLGPDWHDRLAPIRRKRQLIAELERLSGKKVTLNDAA |
Ga0310910_114940162 | 3300031946 | Soil | IAHRLLSDPGTRFSDLGPDWHDRIAPLRRKRQLIAELERLSGRKVVLQESAA |
Ga0306926_125676571 | 3300031954 | Soil | DPGPDWHDRIAPLHRKRQLIAELERLSGKKVTLQEAAA |
Ga0318569_100250735 | 3300032010 | Soil | GARFADLGPTWHDRLTPQRRKRQLIAELERLSGMKVTLEAA |
Ga0318549_103248041 | 3300032041 | Soil | FTDLGPDWHDRLAPIRRKRQLIAELERLSGKKVLLQEAAA |
Ga0318558_104091452 | 3300032044 | Soil | RLLSDPGTRFSDLGPDWHDRIAPLRRKRQLIAELERLSGRKVLLQDAAA |
Ga0318510_100531631 | 3300032064 | Soil | LLSDPDAHFTDLGPYWHDRIAPLRRKRQLIAELERLSGKKVLLEDAAA |
Ga0318524_107518731 | 3300032067 | Soil | FSDLGPDWHDRIAPLRRKRQLIAELERLSGKKVLLQDAAA |
Ga0318518_106189441 | 3300032090 | Soil | LLSDPAAHFADLGPDWHDRLAPLRRKRQLIAELERLSGKKVTLHDAA |
Ga0306920_1002482684 | 3300032261 | Soil | VRGYDDARPGNTDLGPDWHGRLAPLRRKRQLIAKLERLSGIKVNLQESAA |
Ga0335073_101721074 | 3300033134 | Soil | LTDLGPDWHDRIAPIRRKRQLIAELERLSGKKVLLHEEAAA |
⦗Top⦘ |