Metagenome / Metatranscriptome Family F081054

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081054
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	49 residues
Representative Sequence	XAVYGLDVAGVGIGKFSSKAPAGIAAKVAKIKQQIVSGKITNIPTTVK
Number of Associated Samples	93
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.37 %
% of genes from short scaffolds (< 2000 bps)	88.60 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.088 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (8.772 % of family members)
Environment Ontology (ENVO)	Unclassified (34.211 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.754 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.33% β-sheet: 0.00% Coil/Unstructured: 82.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01243	Putative_PNPOx	44.74
PF00202	Aminotran_3	12.28
PF00892	EamA	7.02
PF01266	DAO	5.26
PF02597	ThiS	1.75
PF13417	GST_N_3	0.88
PF00254	FKBP_C	0.88
PF00676	E1_dh	0.88
PF13520	AA_permease_2	0.88
PF02608	Bmp	0.88
PF14559	TPR_19	0.88
PF09335	SNARE_assoc	0.88
PF04316	FlgM	0.88
PF02786	CPSase_L_D2	0.88
PF00355	Rieske	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2747	Negative regulator of flagellin synthesis (anti-sigma28 factor)	Transcription [K]	2.63
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	1.75
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	1.75
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.88
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	0.88
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	0.88
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.88
COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	Signal transduction mechanisms [T]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.09 %
Unclassified	root	N/A	14.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.09 %
Unclassified	root	N/A	14.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.09 %
Unclassified	root	N/A	14.91 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	68.42 %
Unclassified	root	N/A	14.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	68.42 %
Unclassified	root	N/A	14.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.04 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	9.65 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.63 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.65 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.63 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.65 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.63 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.65 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.63 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.65 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.63 %
Solirubrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908039\|B3_v_NODE_111134_len_1859_cov_6_284562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1909	Open in IMG/M
2124908043\|A2_c1_ConsensusfromContig49608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
2170459007\|GJ8XV2H01A9GDE	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
2189573002\|GZIGXIF01DZ791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300001538\|A10PFW1_11558774	Not Available	627	Open in IMG/M
3300002568\|C688J35102_119065139	Not Available	633	Open in IMG/M
3300004153\|Ga0063455_100913713	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300004463\|Ga0063356_105234621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300005173\|Ga0066822_1006455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	688	Open in IMG/M
3300005327\|Ga0070658_10411410	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300005327\|Ga0070658_11743385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300005329\|Ga0070683_100024080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5448	Open in IMG/M
3300005336\|Ga0070680_101266316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	638	Open in IMG/M
3300005344\|Ga0070661_100877239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	740	Open in IMG/M
3300005434\|Ga0070709_11301996	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005434\|Ga0070709_11777139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300005436\|Ga0070713_100424741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1245	Open in IMG/M
3300005436\|Ga0070713_102118848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300005439\|Ga0070711_100425594	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300005458\|Ga0070681_10789459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	866	Open in IMG/M
3300005547\|Ga0070693_101516553	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005587\|Ga0066654_10381432	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005614\|Ga0068856_100461651	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300005616\|Ga0068852_100087146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2785	Open in IMG/M
3300005764\|Ga0066903_103022202	Not Available	911	Open in IMG/M
3300005764\|Ga0066903_106705914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300006804\|Ga0079221_10586923	Not Available	747	Open in IMG/M
3300006854\|Ga0075425_101836180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300009093\|Ga0105240_11817707	Not Available	635	Open in IMG/M
3300009093\|Ga0105240_12406722	Not Available	545	Open in IMG/M
3300009137\|Ga0066709_100430662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1839	Open in IMG/M
3300009148\|Ga0105243_11367221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300009545\|Ga0105237_11908788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300009551\|Ga0105238_10122419	All Organisms → cellular organisms → Bacteria	2581	Open in IMG/M
3300010040\|Ga0126308_10708015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300010329\|Ga0134111_10461787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300010333\|Ga0134080_10146567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	998	Open in IMG/M
3300010366\|Ga0126379_11290497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	836	Open in IMG/M
3300012010\|Ga0120118_1017377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1982	Open in IMG/M
3300012011\|Ga0120152_1099002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	830	Open in IMG/M
3300012210\|Ga0137378_11489003	Not Available	588	Open in IMG/M
3300012955\|Ga0164298_10430299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	862	Open in IMG/M
3300012955\|Ga0164298_10473489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300012957\|Ga0164303_11561789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300012984\|Ga0164309_11242873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300012985\|Ga0164308_11054840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300012989\|Ga0164305_11475448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300013104\|Ga0157370_10116867	All Organisms → cellular organisms → Bacteria	2492	Open in IMG/M
3300013104\|Ga0157370_10222651	All Organisms → cellular organisms → Bacteria	1747	Open in IMG/M
3300013104\|Ga0157370_12058524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300013105\|Ga0157369_12525259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300013296\|Ga0157374_12588008	Not Available	535	Open in IMG/M
3300013307\|Ga0157372_11277901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300013765\|Ga0120172_1097971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300013772\|Ga0120158_10057003	All Organisms → cellular organisms → Bacteria	2640	Open in IMG/M
3300014058\|Ga0120149_1225798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300014325\|Ga0163163_11076335	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300015171\|Ga0167648_1004659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3499	Open in IMG/M
3300015245\|Ga0137409_11439806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300015374\|Ga0132255_100265771	All Organisms → cellular organisms → Bacteria	2457	Open in IMG/M
3300015374\|Ga0132255_104352027	Not Available	600	Open in IMG/M
3300016404\|Ga0182037_11716616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300018431\|Ga0066655_10860207	Not Available	618	Open in IMG/M
3300018468\|Ga0066662_12830306	Not Available	515	Open in IMG/M
3300020070\|Ga0206356_10530626	All Organisms → cellular organisms → Bacteria	1920	Open in IMG/M
3300020078\|Ga0206352_10744985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300020081\|Ga0206354_10072590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1091	Open in IMG/M
3300021384\|Ga0213876_10377832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	754	Open in IMG/M
3300021384\|Ga0213876_10606051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300022467\|Ga0224712_10253931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	813	Open in IMG/M
3300022467\|Ga0224712_10424452	Not Available	636	Open in IMG/M
3300022756\|Ga0222622_10615151	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300025321\|Ga0207656_10287351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300025906\|Ga0207699_11470718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300025911\|Ga0207654_10854088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300025912\|Ga0207707_10616426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	917	Open in IMG/M
3300025913\|Ga0207695_10491822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1109	Open in IMG/M
3300025913\|Ga0207695_10497680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1101	Open in IMG/M
3300025913\|Ga0207695_11125744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300025917\|Ga0207660_11043922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	666	Open in IMG/M
3300025928\|Ga0207700_10437821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1150	Open in IMG/M
3300025928\|Ga0207700_10947656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300025928\|Ga0207700_11842521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300025929\|Ga0207664_10740052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	884	Open in IMG/M
3300025931\|Ga0207644_11308673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	609	Open in IMG/M
3300025944\|Ga0207661_10433399	Not Available	1195	Open in IMG/M
3300025944\|Ga0207661_10580105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1028	Open in IMG/M
3300025945\|Ga0207679_12170884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300026041\|Ga0207639_10357129	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300026078\|Ga0207702_10080222	All Organisms → cellular organisms → Bacteria	2831	Open in IMG/M
3300026142\|Ga0207698_10072148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2743	Open in IMG/M
3300026142\|Ga0207698_12264082	Not Available	556	Open in IMG/M
3300026529\|Ga0209806_1016448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3856	Open in IMG/M
3300026550\|Ga0209474_10736465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300028563\|Ga0265319_1168091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	677	Open in IMG/M
3300028577\|Ga0265318_10100464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1064	Open in IMG/M
3300030010\|Ga0302299_10642400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300031251\|Ga0265327_10119184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1252	Open in IMG/M
3300031251\|Ga0265327_10148882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1088	Open in IMG/M
3300031564\|Ga0318573_10286844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	880	Open in IMG/M
3300031668\|Ga0318542_10429294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300031680\|Ga0318574_10616701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300031712\|Ga0265342_10046096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2621	Open in IMG/M
3300031726\|Ga0302321_100814607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1054	Open in IMG/M
3300031939\|Ga0308174_10133248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1829	Open in IMG/M
3300031981\|Ga0318531_10536537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300031996\|Ga0308176_11814779	Not Available	651	Open in IMG/M
3300031996\|Ga0308176_12944811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300032035\|Ga0310911_10653212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300032074\|Ga0308173_11238906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300032126\|Ga0307415_100942344	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300032829\|Ga0335070_10263317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1685	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.91%
Host-Associated	Host-Associated	35.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.04%
Plants	Host-Associated → Plants	35.09%
Aquatic	Environmental → Aquatic	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.77%
Roots	Host-Associated → Plants → Roots	2.63%
Peat	Environmental → Terrestrial → Peat	1.75%
Sediment	Environmental → Aquatic → Sediment	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.23%
Loam	Environmental → Terrestrial → Soil → Loam	20.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	7.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.51%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	7.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.14%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.14%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.14%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	5.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.75%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.88%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908039	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4	Environmental	Open in IMG/M
2124908043	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_v_00845260	2124908039	Soil	XAVYGLDVAGVGIGKFSSKAPAGIAAKVAKIKQQIVSGKITNIPTTVK
A2_c1_00752250	2124908043	Soil	GNFSPKTPKGIEAKTKQIEQQIVAGKIKNIPTTVK
L02_00091700	2170459007	Grass Soil	VGIGKFSPKTPAGIAAKVAVIKQQIASGKITNIPTTVK
FE1_00640970	2189573002	Grass Soil	LDIGGVGIGKFSPKTPAGIAAKVAVIKQQIASGKITNIPTTVK
A10PFW1_115587743	3300001538	Permafrost	GVGLGKFSPKAPKGIEAKVKQIEQQIIDGKIANIPTTVK*
C688J35102_1190651391	3300002568	Soil	DAQSGNFKGGQDAVYGLDKKGVGLGKFSPNAPAGIEAKVKKIQQQITSGAIKNIPTTVQ*
C688J35102_1206593151	3300002568	Soil	DAQAGKFKGGQDAVYGIKDDGVGIGKFSSDAPKGIPASVATVKQHIVGGKINDIPTIVK*
Ga0063455_1009137131	3300004153	Soil	VFLSIKDAQAGNFKGGQDAVYGLDKKGVGLGKFSPDTPAGIEAKVKKIQQDITSGKIKNIPTVVP*
Ga0063356_1052346211	3300004463	Arabidopsis Thaliana Rhizosphere	AQNGVGLGKFSPKTPAGIPAKVKAIRQQIIDGKIKHIPTEIAG*
Ga0066822_10064551	3300005173	Soil	EQKGVGLGKFSAKAPAGIEQKVLQIEQQIIDGKIPNIPTTVK*
Ga0070658_104114102	3300005327	Corn Rhizosphere	NFKGGQDAVYGLDVDGVGIGKFSAKAPAGIADKVAQIKQQIADGKIKNIPTIVK*
Ga0070658_117433851	3300005327	Corn Rhizosphere	GGQDAVYGIKDEGVGIGKFSTKTPKGIAAKVDAIKAQIVSGKITNIPTTVVK*
Ga0070683_1000240806	3300005329	Corn Rhizosphere	DAVYGLDVNGVGIGKFSAKAPAGIADKVAQIKQQIADGKIKNIPTIVK*
Ga0070680_1012663162	3300005336	Corn Rhizosphere	IDVNGVGIGKFSPKAPKGIAAKVAKVKQQIASGKIANIPTTVK*
Ga0070661_1008772391	3300005344	Corn Rhizosphere	DGVGIGKFSPKTPKGIAAKVAAIKAQILSGKITNIPTTVK*
Ga0070709_113019962	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	DAKDGHFKGGQDAVYGLDVNGVGIGKFSPKAPAGIAAKVAQIREQIADGKIKNIPTIVK*
Ga0070709_117771391	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LSIKDAHAGHFKGGQDSVYGLEQNGVGLGKFSAKAPPGIERKVSQIERQIIAGKITNIPTTVK*
Ga0070713_1004247413	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LDVGGVGIGKFSPKTPAGVAAKVAAIKQQIAAGKIANIPTTVK*
Ga0070713_1021188482	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DDGVGIGKFSPNAPKDIAAQVDKVKQQIVSGKITNIPTVVK*
Ga0070711_1004255943	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	FKGGQDSVYGLEQNGVGLGKFSAKAPPGIERKVSQIERQIIAGKITNIPTTVK*
Ga0070681_107894592	3300005458	Corn Rhizosphere	QDAVYGLDVNGVGIGKFSAKAPAGIADKVAQIKQQIADGKIKNIPTIVK*
Ga0070693_1015165532	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	KGGQDAVYGLEVNGVGIGKFSAKAPAGIADKVEQIKQQIADGKIKNIPTTVS*
Ga0066654_103814322	3300005587	Soil	FDSIRDAKSGHFKGGQDAVYGLKDQGVGIGKFSPAAPKGIAAKVAAVKQQIVSGKIADIPTIVK*
Ga0068856_1004616513	3300005614	Corn Rhizosphere	QDAVYGLDVNGVGIGKFSSKTPAGIAAKVAQVKQQIADGKIKNIPTIVK*
Ga0068852_1000871461	3300005616	Corn Rhizosphere	GKFKGGTDAVYGLDVDGVGIGKFSPKAPAGIAAKVAAVKQQIAAGKIKNIPTIVK*
Ga0066903_1030222021	3300005764	Tropical Forest Soil	EQNGVGLGKFSPKTPKGIEAKVDQIRQDIVSGKIKNIPTTVP*
Ga0066903_1067059143	3300005764	Tropical Forest Soil	IGKFSPKAPAGIEDKVNAVKQQIKDGKITNIPTTVK*
Ga0079221_105869231	3300006804	Agricultural Soil	KGGQDAVYGLEQKGVGLGKFSPKAPKSIRPDVEKIEQQIISGKIKNIPTTLK*
Ga0075425_1018361801	3300006854	Populus Rhizosphere	GKFSSAAPKGIQAKVNAVKQQILDGKITDIPTTVQ*
Ga0105240_118177072	3300009093	Corn Rhizosphere	EGKFKGGTDATYGLKQGGVGLGKFSPQTPAGIEAKVEKIRQQIVAGTITGIPTTVK*
Ga0105240_124067221	3300009093	Corn Rhizosphere	KGGTDAVYGLDKHGVGLGKFSPKAPAGIEAKVKQIEQQIVSGKIKNIPTIVP*
Ga0066709_1004306623	3300009137	Grasslands Soil	VDTAVFLAIKDAKEGHFKGGQDAVYGLEQKGVGVGTFSPKAPKTIKPKVLEIEKEIINGKIKNIPTTVK*
Ga0105243_113672212	3300009148	Miscanthus Rhizosphere	GLNQQGVGLVVFSPKTPAGIEAKVKKIQADITSRKIKNIPTTVQ*
Ga0105237_119087881	3300009545	Corn Rhizosphere	KGGQDAVYGIKDDGVGIGKFSPKTPKGIAAKVAAIKAQIISGKITNIPTIVK*
Ga0105238_101224193	3300009551	Corn Rhizosphere	GIGKFSPKAPAGIAAKVAQIRQQIADGKIKNIPTIVK*
Ga0126308_107080152	3300010040	Serpentine Soil	YGLGQKGVGLGKFSPKAPPGLAQKVKAVQQQIVAGKITNIPTEIGT*
Ga0134111_104617871	3300010329	Grasslands Soil	GVGLGKFSRKAAKGIEAKTKRIEQQIISGKIKNIPTTVK*
Ga0134080_101465672	3300010333	Grasslands Soil	LKGVDRAVFLAIKDAQSGKFKGGQDAIYGLDKKGVGLGKFSPKAPAGIEAKVKQIQQQITSGKITNIPTTVK*
Ga0126379_112904971	3300010366	Tropical Forest Soil	GGKDTVYGLDVDGVGIGKFSPKAPAGIEDKVNAVKQQIKDGKITNIPTTVK*
Ga0120118_10173774	3300012010	Permafrost	GVGLGKFSPKAPKGIEAKTKQIEQQIIDGKIANIPTTVK*
Ga0120152_10990023	3300012011	Permafrost	EQKGVGLGKFSPKAPKGIEAKTKQIEQQIIDGKIGNIPTTVK*
Ga0137378_114890031	3300012210	Vadose Zone Soil	GVGLGKFSRKAPKGIETKVKRIEQQIIDGKIANIPTTVK*
Ga0164298_104302993	3300012955	Soil	GGQDAVYGLKDEGVGIGKFSTKTPKGVAAKVDAIKAQIVSGKITNIPTTVLK*
Ga0164298_104734891	3300012955	Soil	GGRDAVYGLDVNGVGIGKFSAKAPAGIADKVAQIKQQIADGKIKNIPTIVK*
Ga0164303_114636502	3300012957	Soil	GQDTVYGLQDDGVGIGKFSVEAAAVIDDKVEAVKQQIIDGKITNIPTTVK*
Ga0164303_115617891	3300012957	Soil	QQGVGLGVFSPKAPAGIEAKVKKIQADISSGKIKNIPTTVQ*
Ga0164309_112428732	3300012984	Soil	YLSIKDAHAGHFKGGQDSVYGLEQNGVGLGKFSAKAPPGIERKVSQIERQIIAGKITNIPTTVK*
Ga0164308_110548402	3300012985	Soil	LKDEGVGIGKFSTKTPKGVAAKVDAIKAQIVSGKITNIPTTVLK*
Ga0164305_114754482	3300012989	Soil	EQKGVGLGKFSPKAPKDIEAKVLKIEQQIVDGKITNIPTTVK*
Ga0157370_101168673	3300013104	Corn Rhizosphere	GKFSPKAPAGIAAKVAQIRQQIADGKIKNIPTIVK*
Ga0157370_102226511	3300013104	Corn Rhizosphere	GIGKFSPKTPAGIAAKVAQVKQQIARGKIKDIPTIVK*
Ga0157370_120585241	3300013104	Corn Rhizosphere	DAVYGLDVNGVGIGKFSPKAPAGIAAKVQQVKQQIADGKIKNIPTIVK*
Ga0157369_125252591	3300013105	Corn Rhizosphere	DAVYGIKDEGVGIGKFSTKTPKGIAAKVDAIKAQIVSGKITNIPTTVVK*
Ga0157374_125880081	3300013296	Miscanthus Rhizosphere	YAVYGLTQDGVGIGKFSANAPAGIAAKVAAIKSQIASGKIANIPTVVK*
Ga0157372_112779012	3300013307	Corn Rhizosphere	DVNGVGIGKFSPKAPAGIAAKVAQIRQQIADGKIKNIPTIVK*
Ga0120172_10979711	3300013765	Permafrost	FKGGHDAVYGLAQKGVGLGKFSPKAPKGIEAKTKQIEQQIVDGKITNIPTTVK*
Ga0120158_100570034	3300013772	Permafrost	FKGGTDAVYGLDIAGVGIGKFSSKAPKGIAAKVLQIKQQIASGKITNIPTTVK*
Ga0120149_12257982	3300014058	Permafrost	YGLDIAGVGIGKFSSKAPKGIAAKVLQIKQQIASGKITNIPTTVK*
Ga0163163_110763353	3300014325	Switchgrass Rhizosphere	DKKGVGLGKFSPKTPAGIEAKTKKILHDIVSGKIKNIPTTVQ*
Ga0167648_10046591	3300015171	Glacier Forefield Soil	FKGGQDAVYGLKDEGVGIGKFSTKAPKGVAAKVAAIKAKIVSGKFANIATTVK*
Ga0137409_114398062	3300015245	Vadose Zone Soil	GKFSPRAPKGIPAKVQQIKAQIIAGKIKNIPTTVK*
Ga0132255_1002657711	3300015374	Arabidopsis Rhizosphere	QEGVGLGKFSPAAPKDIEPKVREIEQQIKDGKIKSIPTTVS*
Ga0132255_1043520271	3300015374	Arabidopsis Rhizosphere	QDAVYGLDQKGVGLGKFSPNAPAGIEAKVKKIQHDIVSGKITNIPTTVQ*
Ga0182037_117166161	3300016404	Soil	IGKFSRFAPKGIEEKVQQVKADIVSGKITNIPTVVK
Ga0066655_108602071	3300018431	Grasslands Soil	VYGLEQKGVGVGTFSPNAPKTIKPKVLEIEKEIINGKIKNIPTTVK
Ga0066662_128303061	3300018468	Grasslands Soil	TDEESDAVYDAIRDAKTGHFKGGKDAVYGLSVDGVGIGKFSSRAPKGIAAKVGAVRQRIADGKLEHIPTTVK
Ga0206356_105306261	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	YGLDVNGVGIGKFSPKAPAGIAAKVAQIRQQIADGKIKNIPTIVR
Ga0206352_107449851	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	IKSAKAGKFKGGTDAVYGLDVDGVGIGKFSPKAPAGIAAKVAAVKQQIAAGKIKNIPTIV
Ga0206354_100725902	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	KEGHFKGGTDAVYGLDKHGVGLGKFSPKAPAGIEAKVKQIEQQIVSGKIKNIPTIVP
Ga0213876_103778323	3300021384	Plant Roots	KFKGGQDAVYGLDVDGVGIGKFSSKAPAGIAQKVAQVKQQIASGKIKNIPTTVK
Ga0213876_106060511	3300021384	Plant Roots	GIGKFSSKAPAGIAQKVAQVRQEIASGKIKNIPTTVK
Ga0224712_102539313	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VGLGKFSSKTPAGIEIKVDQIRKQIIDGKISNIPTTVK
Ga0224712_104244521	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VYGLDKGGVGLGKFSPKTPAGIEIKVDQIRKQIVDGKIKDIPTTVK
Ga0222622_106151513	3300022756	Groundwater Sediment	LDQKGVGLGKFSPNAPAGIEAKVKKIQQDITSGKITNIPTTVQ
Ga0207656_102873512	3300025321	Corn Rhizosphere	DVNGVGIGKFSAKAPAGIADKVAQIKQQIADGKIKNIPTIVK
Ga0207699_114707182	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LSIKDAHAGHFKGGQDSVYGLEQNGVGLGKFSAKAPPGIERKVSQIERQIIAGKITNIPTTVK
Ga0207654_108540882	3300025911	Corn Rhizosphere	GGEDAVYGLDVDGVGIGKFSAKTPAGIADKVQQIKQQIADGKIKNIPTIVK
Ga0207707_106164263	3300025912	Corn Rhizosphere	KDAKAGNFKGGTDAVYGLDVDGVGIGKFSPKAPTGMAAKVAAVKKQIADGTIKNIPTIVK
Ga0207695_104918221	3300025913	Corn Rhizosphere	GVGLVKFSPKTPAGIESKVKKVEQQIISGKIKNIPTIVP
Ga0207695_104976801	3300025913	Corn Rhizosphere	VNGVGIGKFSPKAPAGIAAKVAQIREQIADGKIKNIPTIVK
Ga0207695_111257441	3300025913	Corn Rhizosphere	LDVDGVGIGKFSPKTPAGIAAKVAQVKQQIAGGKIKDIPTIVK
Ga0207660_110439223	3300025917	Corn Rhizosphere	DAVYGIDVNGVGIGKFSPKAPKGIAAKVAKVKQQIASGKIANIPTTVK
Ga0207700_104378213	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DTAVYDSIRDAKAGKFKGGTDSIYVLDVGGVGIGKFSPKTPAGVAAKVAAIKQQIAAGKIANIPTTVK
Ga0207700_109476561	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GLKDDGVGIGKFSPNAPKDIAAQVDKVKQQIVSGKITNIPTVVK
Ga0207700_118425212	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	YGLDQKGVGLGKFSPKAPAGIEAKVKKIQQDITSGKIKNIPTTVQ
Ga0207664_107400523	3300025929	Agricultural Soil	NGVALGKFSPKTPAGIAAKVNKIRDEIVSGKITNIPTTVK
Ga0207644_113086731	3300025931	Switchgrass Rhizosphere	YGLNQQGVGLGVFSPKTPAGIEAKVKKIQADITSRKIKNIPTTVQ
Ga0207661_104333991	3300025944	Corn Rhizosphere	VGIGKFSAKAPAGIADKVAQIKQQIADGKIKNIPTIVK
Ga0207661_105801051	3300025944	Corn Rhizosphere	AKAGNFKGGTDAVYGLDVDGVGIGKFSPKAPTGMAAKVAAVKKQIADGTIKNIPTIVK
Ga0207679_121708842	3300025945	Corn Rhizosphere	VYGLDVNGVGIGKFSSKTPAGIAAKVAQVKQQIADGKIKNIPTIVK
Ga0207639_103571291	3300026041	Corn Rhizosphere	GGEDAVYGLDVDGVGIGKFSPKTPAGIAAKVAQVKQQIAGGKIKDIPTIVK
Ga0207702_100802224	3300026078	Corn Rhizosphere	DVDGVGIGKFSPKTPAGIAAKVAQVKQQIAGGKIKDIPTIVK
Ga0207698_100721485	3300026142	Corn Rhizosphere	VDGVGIGKFSPKAPAGIAAKVAAVKQQIAAGKIKNIPTIVK
Ga0207698_122640821	3300026142	Corn Rhizosphere	LSIKDAQSGNFKGGQDAIYGLDQKGVGLGKFSPNAPAGIEAKVKKVQQDITSGKITDIPTTVQ
Ga0209806_10164485	3300026529	Soil	SIKDAKDGHFKGGQDSVYGLKVSGVGIGKFSPNAPKNIPSAVAKVEQEIVSGKISNIPTVVK
Ga0209474_107364651	3300026550	Soil	KSGQFKGGQDAVYGLDQNGVGLGKFSPKAPKDIKPKVEAIERQIISGKIKNIPTIVK
Ga0265319_11680913	3300028563	Rhizosphere	IGKFSPKAPKGIAAKVAKIKQEIVSGKITNIPTTVK
Ga0265318_101004643	3300028577	Rhizosphere	KGGQDSVYGLDVNGVGIGKFSPKAPKGIAAKVAKIKQEIVSGKITNIPTTVK
Ga0302299_106424002	3300030010	Fen	AKAGKFRGGTDSVYGLDVGGVGIGKFSVKAPAGIAAKVAAIKQQIASGKITNIPTTVK
Ga0265327_101191843	3300031251	Rhizosphere	DSVYGLDVAGVGIGKFSPKAPKGIAAKVAKIKQEIVSGKITNIPTTVK
Ga0265327_101488823	3300031251	Rhizosphere	RDAKAGKFKGGQDSVYGLDVNGVGIGKFSPKAPKGIAAKVAKIKQEIVSGKITNIPTTVK
Ga0318573_102868442	3300031564	Soil	VYGLTQDGVGIGKFSRFAPKGIEEKVQQVKADIVSGKITNIPTVVK
Ga0318542_104292942	3300031668	Soil	GKFSRFAPKGIEEKVQQVKADIVSGKITNIPTVVK
Ga0318574_106167012	3300031680	Soil	GKFQGGRDTVYGLTQDGVGIGKFSRFAPKGIEEKVQQVKADIVSGKITNIPTVVK
Ga0265342_100460961	3300031712	Rhizosphere	GKFKGGQDSVYGLDVNGVGIGKFSPKAPKGIAAKVAKIKQEIVSGKITNIPTTVK
Ga0302321_1008146071	3300031726	Fen	RGGTDSVYGLDVGGVGIGKFSVKAPAGIAAKVAAIKQQIASGKITNIPTTVK
Ga0308174_101332481	3300031939	Soil	TDAVYGLDVNGVGIGRFSPKAPKGIAAKVAKVKQEIGSGKIKNIPTTVK
Ga0318531_105365371	3300031981	Soil	RDTVYGLTQDGVGIGKFSRFAPKGIEEKVQQVKADIVSGKITNIPTVVK
Ga0308176_118147791	3300031996	Soil	GKFSKKTPAGIEQKVEKIRRQIVSGKISNIPTTVK
Ga0308176_129448112	3300031996	Soil	DAKAGNFKGGQDATYGLDVNGVGIGKFSSKTPAGIAAKVAQVKQQIASGKITDIPSVVK
Ga0310911_106532122	3300032035	Soil	RDTVYGLTQDGVGIGRFSRFAPKGIEEKVQQVKADIVSGKITNIPTVVK
Ga0308173_112389061	3300032074	Soil	DFKGGTDAVYGIDVNGVGIGKFSPKTPAGIAQKVAAVKQQVASGKIKNIPTIVK
Ga0307415_1009423443	3300032126	Rhizosphere	AEADRFRGGSDAVYGLGQKGVGLGKFSAKAPAGIESKARAVQQQIVDGTITNIPTELGT
Ga0335070_102633171	3300032829	Soil	HFTGGTDVTYGLQQNGVGIGVFSPKAPKGIAAKVNQVKVDIINGKITNIPTIVPGNG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081054

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences