Metagenome / Metatranscriptome Family F081049

Overview

Basic Information

• Family ID: F081049
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 114
• Average Sequence Length: 40 residues
• Representative Sequence: MTAADRIIRWSTAGAVIGVAAVAAVASYEHAYDLVRAH
• Number of Associated Samples: 96
• Number of Associated Scaffolds: 114

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 85.71 %
• % of genes near scaffold ends (potentially truncated): 80.70 %
• % of genes from short scaffolds (< 2000 bps): 77.19 %
• Associated GOLD sequencing projects: 94
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (65.789 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.088 % of family members)
• Environment Ontology (ENVO): Unclassified (31.579 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (37.719 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 53.03%
  β-sheet: 0.00%
  Coil/Unstructured: 46.97%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13408	Zn_ribbon_recom	4.39
PF00355	Rieske	3.51
PF00589	Phage_integrase	2.63
PF01965	DJ-1_PfpI	1.75
PF10935	DUF2637	1.75
PF14013	MT0933_antitox	1.75
PF00271	Helicase_C	1.75
PF03853	YjeF_N	1.75
PF01641	SelR	1.75
PF08281	Sigma70_r4_2	1.75

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0062	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain	Nucleotide transport and metabolism [F]	1.75
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	1.75
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.88
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.88
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.88
COG2124	Cytochrome P450	Defense mechanisms [V]	0.88
COG2315	Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family	Transcription [K]	0.88
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.54 %
Unclassified	root	N/A	32.46 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.54 %
Unclassified	root	N/A	32.46 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.79 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.75 %
Unclassified	root	N/A	32.46 %

Level 4

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	1.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	57.89 %
Unclassified	root	N/A	32.46 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	56.14 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	1.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.88 %
Unclassified	root	N/A	32.46 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35.96 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.75 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.88 %
Unclassified	root	N/A	32.46 %

Level 7

Name	Rank	Taxonomy	Distribution
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.75 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.88 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.88 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.88 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.88 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	9.65 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1.75 %
Unclassified	root	N/A	32.46 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.63 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.63 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.88 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	1.75 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3.51 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.39 %
Unclassified	root	N/A	32.46 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	3.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.63 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1.75 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.39 %
Unclassified	root	N/A	32.46 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.88 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	1.75 %
Actinomadura meyerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura meyerae	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.63 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Planctomycetaceae bacterium SCGC AG-212-D15	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-D15	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Rhodococcus jostii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus jostii	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.39 %
Unclassified	root	N/A	32.46 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	0.88 %
unclassified Symbiodinium	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium	1.75 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	1.75 %
Actinomadura meyerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura meyerae	0.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.63 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.88 %
Mycobacterium sp. 852002-50816_SCH5313054-b	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 852002-50816_SCH5313054-b	0.88 %
Planctomycetaceae bacterium SCGC AG-212-D15	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-D15	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Rhodococcus jostii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus jostii	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Symbiodinium sp. KB8	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	1.75 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.39 %
Unclassified	root	N/A	32.46 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003219|JGI26341J46601_10224314	Not Available	505
3300003505|JGIcombinedJ51221_10196376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	819
3300005366|Ga0070659_100399567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1160
3300005436|Ga0070713_100074536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2875
3300005437|Ga0070710_11479991	Not Available	510
3300005458|Ga0070681_10093613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2954
3300005458|Ga0070681_11811800	Not Available	537
3300005577|Ga0068857_102184907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	543
3300005921|Ga0070766_11322097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	500
3300006804|Ga0079221_11800733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.98%
Host-Associated	Host-Associated	7.02%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.77%
Plants	Host-Associated → Plants	7.02%
Terrestrial	Environmental → Terrestrial	84.21%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	8.77%
Peat	Environmental → Terrestrial → Peat	6.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.26%
Soil	Environmental → Terrestrial → Soil	78.07%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.75%
Loam	Environmental → Terrestrial → Soil → Loam	15.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.26%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.02%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.28%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.51%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.40%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.14%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.88%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.14%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.09%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.51%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26341J46601_102243142	3300003219	Bog Forest Soil	MAADRVIRWTTAGAVAGVAAMASHEHAHALVRAHGEAGRT
JGIcombinedJ51221_101963762	3300003505	Forest Soil	VTAADRVIRWTTAVTVIVVAAVAAAAPYDHAYALVRAHGGAGWTA
Ga0070659_1003995671	3300005366	Corn Rhizosphere	MAADRLIRWSTALAVLGVAAVGATASYEHAYDLMRAHCKSG*
Ga0070713_1000745364	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTAADRVIRWSTALAVLGIAVVAAVVSYEHAYALVRAHGE
Ga0070710_114799912	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSGTDRVIKWSTAFAVLAVAAVASYEHAYDLVRAHGEEGGRRI*
Ga0070681_100936133	3300005458	Corn Rhizosphere	MAADRLIGWSTALAVLGVAAVGATASYEHAYDLMRAHCKSG*
Ga0070681_118118002	3300005458	Corn Rhizosphere	VTATERIIRWSTAGAVVGVAAVAAVASYDHAYALVSTHVEAGWTGRL
Ga0068857_1021849072	3300005577	Corn Rhizosphere	AADRLIGWSTALAVLGVAAVGATASYEHAYDLMRAHCKSG*
Ga0070766_113220972	3300005921	Soil	CWWCPVMAADRVIRWTTAVAVISVVAVAAAASYEHA*
Ga0079221_118007331	3300006804	Agricultural Soil	MSGAEPIIRWSTAFTVLGVAAVAAVASYEHAYDLVRAH
Ga0066797_10045705	3300006864	Soil	MTAVDRITRWTTALAVVGVAAVAAVASYEHAYALVRA*
Ga0116135_11612591	3300009665	Peatland	MMAADRVIRWSTALAVLGVAAVAAVASYEHAYDLVRPTVS
Ga0126373_117610531	3300010048	Tropical Forest Soil	VTAADRVIRWTTAGAVVGVAAVAAVGSYEHAYDLV
Ga0126373_124446052	3300010048	Tropical Forest Soil	MTAADRIMRWTAAVAVIGVAAVAAVVSYEHAYALVRAH
Ga0099796_102085022	3300010159	Vadose Zone Soil	MTAADRIIRWSTAGAVIGVAAVAAVASYEHAYDLVRAH
Ga0126379_134699681	3300010366	Tropical Forest Soil	MSGADRVIRWSTAGAVLGVAAVAAVASYEHAYDLSWLRLVRI
Ga0126381_1012760481	3300010376	Tropical Forest Soil	MSGADRVIRWSTAGAVLGVAAVAAVASYEHAYDLSWLRLVRISVAAGDGF*
Ga0134126_104600201	3300010396	Terrestrial Soil	VNVTGRVIAWSTALAVLGVAGVAAVASYEHAYDLVRAHGEAGWTARLV
Ga0137389_110758472	3300012096	Vadose Zone Soil	MAADRVIRWTTAGAVAGVAAMASYEHAHALVRAHGEAGRTG
Ga0137378_114460601	3300012210	Vadose Zone Soil	MSSGDRLIRWSTAVAVLGVAAVAAVASYEHACRLHS
Ga0137360_117316302	3300012361	Vadose Zone Soil	MRGADRVIRWSTAGVVVDVATVAAVASYEHVYALVRAHGE
Ga0164307_109467893	3300012987	Soil	IRRATAGAIIVVAAFTAVAPYEHAYDLVHAHGEVG*
Ga0157369_116513971	3300013105	Corn Rhizosphere	MNAADRVMRWSTALAVLGVAAIAAVVSYEHAGALVRAH
Ga0182032_107869212	3300016357	Soil	MTTTGQIIRWSTAGAVVGVAAVAAVASYEHAYALVRA
Ga0182037_112307891	3300016404	Soil	MTAGQIIRWSTAGAVAGVAAVAAVASCEHAYALVRAHGETGWI
Ga0182039_122100171	3300016422	Soil	MMAADRVIRWSTAGAVLGVAAVAAVASHEHASDLVLPSKT
Ga0187812_100042713	3300017821	Freshwater Sediment	MTSTGQIIRWSTAGAVVGVAAVAAVASYEHAYALVRAH
Ga0187812_10116523	3300017821	Freshwater Sediment	MMAADRFIRWTTAGAVPGVAAVAAVASCEHAYDLLRAHGEAG
Ga0187820_12133702	3300017924	Freshwater Sediment	MSAADRVVRWSTALAALGVALVAAVVSYEHAGDLVRRMPPHSG
Ga0187806_12035891	3300017928	Freshwater Sediment	MTGADRVIRWSTAFAVLGVAAVAAVASYEHAYDLVRAH
Ga0187801_103032292	3300017933	Freshwater Sediment	MAADRVIRWTTEGAVAGAAAMASYEHAYALVQAHGE
Ga0187817_103723342	3300017955	Freshwater Sediment	MTADRVIRWTTAGAVIGVAALASYEHAYDLVRAHGETGWT
Ga0187810_101045611	3300018012	Freshwater Sediment	MAADRVIRWTTAGAVIAVAAMASYEHPSAFVRVHGQAARP
Ga0187890_107497301	3300018044	Peatland	MAADRVIRWTTAVAVIAVIAVASYEHAYDLVRAHGEAGWTARLV
Ga0206349_19776074	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MAADRVIRRAIAGAIIVVAAFTAVAPYEHAYDLVHAHGEVG
Ga0206351_104351791	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	MMAADRVIRWSTAGVVIGVAAVAAAASYEHACDLVRAHGEAGRR
Ga0210395_106386761	3300020582	Soil	MTGTDKAIRWSTAAAVIGVAVVAAVVSYEHAYALV
Ga0210404_101979101	3300021088	Soil	MAADRVIRWTTAVAVIGVAAVAAVASYEHAYDLVRA
Ga0210400_109793391	3300021170	Soil	MIGADRTIRWSTAAAVIGVAVVAAAVSYEHGYALVRVHGEV
Ga0210408_110263742	3300021178	Soil	MAADRVIRWTTAVTVIVVAAVAAAAPYYHAYALVRAHGGAGWTA
Ga0210386_104192223	3300021406	Soil	MTAADRIIRWATAGAVIGVAAVAAVASYEHAYALVQVH
Ga0210386_105472931	3300021406	Soil	MTAADRVIRWSTALAVIGVAAVAAVVANEHASPLVRAHG
Ga0210386_112375592	3300021406	Soil	MNADRVIRWSTALAVVGVDAVAAVVSYEHASALVREHGE
Ga0210386_117360491	3300021406	Soil	MNAADRVIRWSTALAVVGVAVVATVVSYEHASDLVREHG
Ga0210402_112189082	3300021478	Soil	VTAADRVIRWTTAVAVIGVAAVAAIASYEHAYDLVRAHGEAG
Ga0210402_115262342	3300021478	Soil	MTGANRVIRWSIAGAVVGMAAVASCEHAHALMRAHGEIIIA
Ga0207692_104106292	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTAADRIIRWTTAVAVIGVAAIAAVVSYKHAGDLVRAHG
Ga0207699_108652291	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRSEDRVIRWSTALAVLGVAAVAAVASYEHAYEFLR
Ga0207643_108925462	3300025908	Miscanthus Rhizosphere	MAADRLIRWSTALAVLGVAAVGATASYEHAYDLMRAHCKSG
Ga0207684_103316023	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSTADRVIQWSTALAVLGIAGVAAVASYEHAYDLVRAHGAA
Ga0207707_112244701	3300025912	Corn Rhizosphere	MTGTDKAIRWSTAAAVIGVAAVAAVVSYEHAYDLVHAHSETG
Ga0207695_103906491	3300025913	Corn Rhizosphere	MSGDDRVTRWSTAVAVLGVAAVAVVASYEHAYVATTVC
Ga0207693_100968625	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MAADWVIRWTTAVTVIVVAAVAAAAPYEHAYALVRAH
Ga0207693_100993831	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MAADRVIRWTTAVTVIVVAAVAAAAPYEHAYALVRAH
Ga0207663_100869618	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSGADPIIRWSTAFTVLGVAAVAAVASYEHAYDLVRAHVS
Ga0207660_106515521	3300025917	Corn Rhizosphere	MAADRLIGWSTALAVLGVAAVGATASYEHAYDLMRAHCKSG
Ga0207649_106208011	3300025920	Corn Rhizosphere	MSGDDRVTRWSTAVAVLGVAAVAVVASYEHAYVWLRRFAL
Ga0207664_101393255	3300025929	Agricultural Soil	MAADRVIWWATAGAVVGVAAVAPYEHAYALVLAHAEAGGRAAGFQ
Ga0207665_111234011	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MAGTDKAIRWSTAAAVIGVAVVAAVVSYEHAYALV
Ga0207744_10044293	3300026927	Tropical Forest Soil	MTTGQIIRWSTAGAVAGVAAVAAVASCEHAYALVRAHGETGWIGRL
Ga0209330_11245982	3300027619	Forest Soil	MTAADRVIRSTTAVAVIGVAVIAAVVSYEDAGDLVRAHG
Ga0265352_10050591	3300028021	Soil	MAADRVIRWTSAAAVIGVAAVTAVASYEHAYHLVRARGAGVDGPA
Ga0265334_103025541	3300028573	Rhizosphere	VNDADRVIRWSTALAVLGVAAVAATASYEHAYDLVRDQELG
Ga0302220_103473971	3300028742	Palsa	MAADRVIRWTTAVAAIGVAAVASCEHAYDLVRAHGEAGWTAPLVPLTVGGLIYAS
Ga0265338_110088592	3300028800	Rhizosphere	MTAADRIIRWSTALAVLGVAAIAAVVSYEHAGDLVRAH
Ga0302226_104332371	3300028801	Palsa	MNTADRVIRWSTAVAVLGVAAVAAAASCEDGCDLVRAHGEAGWTA
Ga0302229_104065881	3300028879	Palsa	MTADRVIRWTTAGAVVGVAAVAAVASYEHAYALVVAHGEA
Ga0311338_108313461	3300030007	Palsa	VNGADRIIRWTTAGAVLGVAAVAAVASYEHAYALVRA
Ga0311355_115512901	3300030580	Palsa	MSAADRVIRWSTAGAVIGVAAVAAVVAYEHAYAPV
Ga0302308_108428091	3300031027	Palsa	MTADRVIRWTTAGAVVGVAAVAAVASYEHAYALVVA
Ga0302325_122664731	3300031234	Palsa	VTAADRVIRWTTAGAVAGVAAVAAVASYEHAYALVR
Ga0318516_100055211	3300031543	Soil	MTTGQIIRWSTAGAVIGVAAVAEVASYEHAYAPVRAHGETG
Ga0318516_100546871	3300031543	Soil	MTTGQIIRWSTAGAVAGVAAVAAVASCEHAYALVRAHGETGWI
Ga0318561_102608382	3300031679	Soil	MTTGQIIRWSTAGAVVGVAAVAAVAPCEHAYALVRAHGETGWI
Ga0307476_101861331	3300031715	Hardwood Forest Soil	MTTTEHVIRWSTAGAVLGVAAVAAVASYEHAYDLVRMH
Ga0318493_100447161	3300031723	Soil	MTTGQIIRWSTAGAVIGVAAVASYEHAYALVRAHGE
Ga0318501_100180254	3300031736	Soil	MTTGQIIRWSTAGAVIGVAAVASYEHACALVRAHGETGW
Ga0318494_106431221	3300031751	Soil	MSVADRTIRWSTAGIVLGVAAVAAVASYEPAYDLVRAHGES
Ga0318498_100833122	3300031778	Soil	MTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVRAH
Ga0318498_102533611	3300031778	Soil	MTAGQIIRWSTAGAVAGVAAVAAVASCEHAYALVRAHGETGWIGRL
Ga0318566_100020861	3300031779	Soil	MTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVR
Ga0318508_10877731	3300031780	Soil	MTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVRAHGETG
Ga0318523_101012023	3300031798	Soil	MTTGQIIRWSTAGAVIGVAAVASYEHAYALVRAHGET
Ga0318565_100863643	3300031799	Soil	MTTGQIIRWSTAGAVIGVAAVASYEHAYALVRAHGETGW
Ga0318497_102302182	3300031805	Soil	MTTGQIIRWSTAGAVAGVAAVAAVASCEHAYALVRAHGETG
Ga0318497_102514112	3300031805	Soil	MTTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVRAHGETGWIG
Ga0307478_105779882	3300031823	Hardwood Forest Soil	MSGADRVIRWSTAFAVLGVTAVAATASYEHAYDLVRA
Ga0318511_105687941	3300031845	Soil	MTTTGQIIRWSTPEAVVGVAAVAAVASYEHAYALVRA
Ga0306919_100480951	3300031879	Soil	MTTTGQIIRWSTAGAVAGVAAVAAVASYEHACALVRAHGETGWIG
Ga0306919_105159812	3300031879	Soil	MTSAGQISRWCTAGTVVGVAAVAAVASYEHAYALVR
Ga0318522_104304631	3300031894	Soil	MTTGQIIRWSTARAVAGVAAVAAVASCEHAYALVRAHGETGW
Ga0306923_1000320715	3300031910	Soil	MTTGQIIRWSTAGAVVGVAAVAAVAPCENAYALVRAHGE
Ga0310912_103584672	3300031941	Soil	MTSGQIIRWSTAGAVAGVAAVAAVASCEHAYALVRA
Ga0310912_106720932	3300031941	Soil	MTTGQIIRWSTAGAVIGVAAVASYEHACALVRAHGETG
Ga0310916_105584981	3300031942	Soil	MTTGQVIRWSTAGAVAGVAAVAAVASCEHAYALVRAHGETGWI
Ga0310910_100417002	3300031946	Soil	MTTGQIIRWSTAGSVIGVAAVAEVASYEHAYAPVRAHGETG
Ga0318530_100383722	3300031959	Soil	MTTGQIIRWSTAGAVIGVAAVASYEHAYAPVRAHGETG
Ga0318563_104917631	3300032009	Soil	VTAAEQVIRWSTAGAVVGVAAVAAVVSYEHPYVLVRAHGEAG
Ga0318545_102998751	3300032042	Soil	MTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVRAHG
Ga0318558_100036611	3300032044	Soil	MTTGQIIRWSTAGAVVGVAAVAAVAPCEHAYALVRAHGETG
Ga0318558_102478092	3300032044	Soil	MTTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVRAHGETGW
Ga0318575_100932632	3300032055	Soil	MTTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVRAHGE
Ga0318513_100007271	3300032065	Soil	MTTGQIIRWSTAGAVVGVAAVAAVAPCEHAYALVR
Ga0308173_102311831	3300032074	Soil	MTSADRIIRWSTALAVIGVAAVAAVVSYEHASDLVREHGVS
Ga0318525_100100668	3300032089	Soil	MTAGQIIRWSTAGAVAGVAAVAAVASCEHAYALVRAHGE
Ga0318525_100566571	3300032089	Soil	MTTGQIIRWSTAGAVVGVAAVAAVASCEHAYALVRAHGETGWIGR
Ga0335078_106847393	3300032805	Soil	MSAADRIIRWSTAGAVVRVAAVAAVASYEHAYDLVRAHGESFAASRAHMLP
Ga0335074_1000138219	3300032895	Soil	MVVDRVIWWTTGAAVIGVAAVAAVASYEHLFDLVRAHGRLGRRFDWSRSPWTG
Ga0335074_105982003	3300032895	Soil	MTVVDGVIRWTTVGAVLGVAAVAAVASYEHAYDLVRVHG
Ga0335074_114420752	3300032895	Soil	VSGAGRVIRWSTALAVLGVAAVASVASYEHAYDFVRMHGED
Ga0335072_100050132	3300032898	Soil	MAVDRVIWWTTGAAVIGVAAVAAVASYEHLFDLVRAHGRLGRRFDWSRSPWTG
Ga0335073_100263845	3300033134	Soil	MNAADRMIRWSAALAVVSVAVVAAVVSYEHRSTLAREHGESDCT
Ga0335073_104216562	3300033134	Soil	MNVVDRVIRWLTALAVVGVAAVAAVVSYEHASALVRAYGESRVGPGA
Ga0318519_100350861	3300033290	Soil	MTTGQIIRWSTAGAVVGVAAVAAVAPCEHAYALVRAHGE