Metagenome Family F081039

Basic Information
Family ID	F081039
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	46 residues
Representative Sequence	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAE
Number of Associated Samples	80
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	13.91 %
% of genes near scaffold ends (potentially truncated)	29.82 %
% of genes from short scaffolds (< 2000 bps)	72.81 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (74.561 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (36.842 % of family members)
Environment Ontology (ENVO)	Unclassified (68.421 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (71.053 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1MLSed_100700344 2JGI24028J26656_10075893 3B570J29032_1097493241 4B570J40625_10000974117 5B570J40625_1003871872 6Ga0066177_104534762 7Ga0069718_100116702 8Ga0049085_100413922 9Ga0075470_101900691 10Ga0075464_104233852 11Ga0075459_10885091 12Ga0075458_100680131 13Ga0075458_102634182 14Ga0114973_100265542 15Ga0114962_100139887 16Ga0114962_100350082 17Ga0114962_101062991 18Ga0114962_101154412 19Ga0114962_101685012 20Ga0114980_1000028016 21Ga0114980_100066049 22Ga0114980_101344952 23Ga0114980_107137452 24Ga0114963_103698071 25Ga0114977_1000119914 26Ga0114977_100041792 27Ga0114981_101850381 28Ga0105104_104925622 29Ga0114979_105482702 30Ga0114969_100918204 31Ga0114969_105212322 32Ga0114974_104200612 33Ga0114974_106151332 34Ga0114976_104120932 35Ga0114964_100998713 36Ga0114960_106023021 37Ga0133913_107132051 38Ga0133913_107900213 39Ga0133913_134353711 40Ga0133913_136379361 41Ga0164293_100194393 42Ga0164293_105871421 43Ga0164292_103583082 44Ga0136642_10125652 45Ga0136642_10236432 46Ga0136641_10291694 47Ga0136641_10516324 48Ga0136641_10517852 49Ga0136641_11070462 50Ga0181347_10428782 51Ga0181365_10905301 52Ga0181344_10243042 53Ga0181356_11116532 54Ga0181358_11437942 55Ga0181348_10827761 56Ga0181359_10951031 57Ga0211732_11910122 58Ga0211731_100458871 59Ga0211731_100610352 60Ga0211731_103433363 61Ga0211731_110084142 62Ga0211731_114730431 63Ga0208235_10026026 64Ga0208486_10494842 65Ga0214162_100003720 66Ga0194059_10900091 67Ga0213921_10303072 68Ga0213922_10042485 69Ga0222714_104124351 70Ga0222712_102504722 71Ga0222712_105189711 72Ga0181354_11395252 73Ga0214919_100014055 74Ga0214919_103170032 75Ga0208147_11622482 76Ga0208784_10906941 77Ga0208916_103217772 78Ga0208942_10338102 79Ga0209188_10120832 80Ga0209297_100071113 81Ga0209297_10090462 82Ga0209085_11381643 83Ga0209597_10747182 84Ga0209084_10735422 85Ga0209084_10850141 86Ga0209084_12816192 87Ga0209084_12981992 88Ga0209596_10367653 89Ga0209296_13198002 90Ga0209088_1000027331 91Ga0209668_103889892 92Ga0209048_110702572 93Ga0209191_10433271 94Ga0209298_100394012 95Ga0209298_103272251 96Ga0209299_11773571 97Ga0247723_10004422 98Ga0247723_10517762 99Ga0315291_106682452 100Ga0315297_113080521 101Ga0315285_101289921 102Ga0315274_110323081 103Ga0315284_116036232 104Ga0315903_111886972 105Ga0315286_104929632 106Ga0315273_123679982 107Ga0316226_11457062 108Ga0334994_0073514_3_110 109Ga0334994_0358789_346_489 110Ga0335003_0007956_5176_5319 111Ga0335003_0018469_2323_2469 112Ga0334979_0023525_940_1083 113Ga0335031_0304615_173_316 114Ga0335048_0051761_1_114
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1MLSed_100700344 2JGI24028J26656_10075893 3Ga0075470_101900691 4Ga0105104_104925622 5Ga0114969_100918204 6Ga0114969_105212322 7Ga0114974_106151332 8Ga0133913_136379361 9Ga0213921_10303072 10Ga0209298_103272251 11Ga0315903_111886972 12Ga0316226_11457062 13Ga0334994_0073514_3_110
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1B570J40625_1003871872 2MLSed_100700344 3Ga0075459_10885091 4Ga0114973_100265542 5Ga0114962_100350082 6Ga0114962_101154412 7Ga0105104_104925622 8Ga0114979_105482702 9Ga0114969_105212322 10Ga0114974_104200612 11Ga0181365_10905301 12Ga0181348_10827761 13Ga0211732_11910122 14Ga0222712_105189711 15Ga0214919_103170032 16Ga0208147_11622482 17Ga0209596_10367653 18Ga0315274_110323081 19Ga0316226_11457062 20Ga0335003_0018469_2323_2469
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.67% β-sheet: 0.00% Coil/Unstructured: 57.33%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13884	Peptidase_S74	42.11
PF00149	Metallophos	1.75
PF01464	SLT	1.75
PF13481	AAA_25	0.88
PF13414	TPR_11	0.88
PF03237	Terminase_6N	0.88
PF12708	Pectate_lyase_3	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.60 %
Unclassified	root	N/A	11.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.63 %
Unclassified	root	N/A	11.40 %
Viruses	superkingdom	All Organisms → Viruses	85.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.63 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	74.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	74.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Unclassified	root	N/A	11.40 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.88 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	74.56 %

Name	Rank	Taxonomy	Distribution
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	74.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %

Name	Rank	Taxonomy	Distribution
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.88 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.88 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	74.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %

Name	Rank	Taxonomy	Distribution
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.88 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	74.56 %

Name	Rank	Taxonomy	Distribution
Cytophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae	0.88 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	74.56 %

Name	Rank	Taxonomy	Distribution
Aquirufa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Aquirufa	0.88 %
Paenibacillus frigoriresistens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus frigoriresistens	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	74.56 %

Name	Rank	Taxonomy	Distribution
Aquirufa nivalisilvae	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Aquirufa → Aquirufa nivalisilvae	0.88 %
Paenibacillus frigoriresistens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus frigoriresistens	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.40 %
Unclassified	root	N/A	11.40 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	74.56 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001533\|MLSed_10070034	All Organisms → Viruses → Predicted Viral	1781	Open in IMG/M
3300002091\|JGI24028J26656_1007589	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1470	Open in IMG/M
3300002408\|B570J29032_109749324	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1202	Open in IMG/M
3300002835\|B570J40625_100009741	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17499	Open in IMG/M
3300002835\|B570J40625_100387187	All Organisms → Viruses → Predicted Viral	1366	Open in IMG/M
3300004096\|Ga0066177_10453476	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	563	Open in IMG/M
3300004481\|Ga0069718_10011670	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1796	Open in IMG/M
3300005583\|Ga0049085_10041392	All Organisms → Viruses → Predicted Viral	1681	Open in IMG/M
3300006030\|Ga0075470_10190069	Not Available	590	Open in IMG/M
3300006805\|Ga0075464_10423385	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	811	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.25%
Terrestrial	Environmental → Terrestrial	1.75%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.75%
Freshwater	Environmental → Aquatic → Freshwater	88.60%
Marine	Environmental → Aquatic → Marine	9.65%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	7.02%
Creek	Environmental → Aquatic → Freshwater → Creek	1.75%
Lake	Environmental → Aquatic → Freshwater → Lake	64.91%
Lentic	Environmental → Aquatic → Freshwater → Lentic	18.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.75%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.51%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.14%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	58.77%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	12.28%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.02%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	1.75%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.88%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	7.02%
Benthic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic	0.88%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.75%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.63%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.53%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.53%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.51%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.75%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	1.75%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.88%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.88%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	36.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	7.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.75%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.88%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.14%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.88%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001533	Benthic freshwater microbial communities from British Columbia, Canada	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300004096	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006863	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MLSed_100700344	3300001533	Benthic	MKKEEALQLLYNAARLAPLNAEQHEAVRKAAETLNEELNPKEEKKK*
JGI24028J26656_10075893	3300002091	Lentic	MNTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKAE*
B570J29032_1097493241	3300002408	Freshwater	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKK
B570J40625_10000974117	3300002835	Freshwater	MNTETALNNLYAAARLAPLPAEQHDILRKSAEVLVEALKPKEEKKAE*
B570J40625_1003871872	3300002835	Freshwater	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAE*
Ga0066177_104534762	3300004096	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEPKVE*
Ga0069718_100116702	3300004481	Sediment	MTTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAE*
Ga0049085_100413922	3300005583	Freshwater Lentic	MNTETALNNLYQAARLAPLPAEQHDIIRKSAEVLVEALKPKEPKVE*
Ga0075470_101900691	3300006030	Aqueous	MTTEQALNNLYAASRRAPLTAEEHELLRKSAELLLEAL
Ga0075464_104233852	3300006805	Aqueous	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEAPKAD*
Ga0075459_10885091	3300006863	Aqueous	MTTEQALNNLYAASRRAPLSADEHELLRKSAELILEA
Ga0075458_100680131	3300007363	Aqueous	MTTEQALNNLYAASRRAPLTAEEHEILRKSAEVLLEAIK
Ga0075458_102634182	3300007363	Aqueous	MTTEQALNNLYAAARLAPLPAEQHEILRKSVEVLVEALKPKEEKKAE*
Ga0114973_100265542	3300009068	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHEIVRKCAEILAEALKPKEEPKQ*
Ga0114962_100139887	3300009151	Freshwater Lake	MNTEQALNNLYTAARSAMLTAEQHEIIRKSAEVLVEALKPKEEKKAD*
Ga0114962_100350082	3300009151	Freshwater Lake	MNTETALNNLYAAARSAMLTAEQHEIIRKSAEVLVEALKPKEDKKAE*
Ga0114962_101062991	3300009151	Freshwater Lake	MNTEQALNNLYNAARSAMLTAEQHDIIRKSVEVLVEALKPKEEKKAE*
Ga0114962_101154412	3300009151	Freshwater Lake	MNTEQALNNLYQAARSAMLTAEQHEIIRKSVEVLVEALKPKEEKKAD*
Ga0114962_101685012	3300009151	Freshwater Lake	MNTETALNNLYAAARSAMLTAEQHEIIRKSVEVLVEALKPKEAPKAD*
Ga0114980_1000028016	3300009152	Freshwater Lake	MNTEQALNNIYNAARLAPLTAEQHDIIRKSAEVLVEALKPKEEKKAE*
Ga0114980_100066049	3300009152	Freshwater Lake	MNTEIALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEAPKAD*
Ga0114980_101344952	3300009152	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAD*
Ga0114980_107137452	3300009152	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHDILRKSVEVLVEALKPKEEKKSE*
Ga0114963_103698071	3300009154	Freshwater Lake	MNTETALNNLYAAARSAMLTAEQHDIIRKSAEVLVDALKPKEEKKAE*
Ga0114977_1000119914	3300009158	Freshwater Lake	MNTETALNNLYQAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAE*
Ga0114977_100041792	3300009158	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKAD*
Ga0114981_101850381	3300009160	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHEILRKSAEVLVEALKPKEEKKAE*
Ga0105104_104925622	3300009168	Freshwater Sediment	MENQKENEQALQNLYAAARLAPLKADEHELLRKCAEQLLQALKPKEAPAT*
Ga0114979_105482702	3300009180	Freshwater Lake	MNMSTETALNNIYNAARMAPLTAEQHDIIRKSAEVLVEALKPKEAPKAD*
Ga0114969_100918204	3300009181	Freshwater Lake	MTTEQALNNLYNAARLAPLNAEQHELIRKCAEQLAEALKP
Ga0114969_105212322	3300009181	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHELIRKSGEAIAEALKPKTEANAELIKDNE*
Ga0114974_104200612	3300009183	Freshwater Lake	MNTEQALNNLYQAARLAPLPAEQHDIIRKSAEVLVEALKPKTDAPVSE*
Ga0114974_106151332	3300009183	Freshwater Lake	MNPETALQNLYNATRLAPLTAEQHEFLITCAKAVAEALKPKDTENEQP*
Ga0114976_104120932	3300009184	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHKIIRKSAEVLVEALKPKEEKKAD*
Ga0114964_100998713	3300010157	Freshwater Lake	MNTETALNNLYAAARLAPLPAEQHDIIRKSAEVLVDALKPKEAPKAD*
Ga0114960_106023021	3300010158	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHEIIRKSVEVLVEALKPKEAPKAD*
Ga0133913_107132051	3300010885	Freshwater Lake	TEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAD*
Ga0133913_107900213	3300010885	Freshwater Lake	MNPETALQNLYNATRLAPLTAEQHEFLVTCAKAVAEALKPKDTDNEQP*
Ga0133913_134353711	3300010885	Freshwater Lake	EQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEDKKAE*
Ga0133913_136379361	3300010885	Freshwater Lake	NNLYAAARSAMLTAEQHEIIRKSAEVLVEALKPKEDKKAE*
Ga0164293_100194393	3300013004	Freshwater	MNTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEAPKAD*
Ga0164293_105871421	3300013004	Freshwater	MNTEQALNNLDAAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKAE*
Ga0164292_103583082	3300013005	Freshwater	MNTEQALNNLYQAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKAE*
Ga0136642_10125652	3300013285	Freshwater	MNTETALNNLYAAARLAPLPAEQHEIIRKSAELLVEALKPKEEKKAE*
Ga0136642_10236432	3300013285	Freshwater	MNTEQALNNLYQAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKVE*
Ga0136641_10291694	3300013286	Freshwater	MNTEQALNNLYQAARLAPLSAEQHEIIRKSAEVLVEALKPKEEKKAD*
Ga0136641_10516324	3300013286	Freshwater	NTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKVE*
Ga0136641_10517852	3300013286	Freshwater	MNTEQALNNLYQAARLAPLSAEQHEIIRKSAEVLVEALKPKEEKKVE*
Ga0136641_11070462	3300013286	Freshwater	MNTEQALNNLYQAARLAPLSAEQHEIIRKSAEVLVEALK
Ga0181347_10428782	3300017722	Freshwater Lake	MNTEVALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEAPKAD
Ga0181365_10905301	3300017736	Freshwater Lake	MTTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEAPKAD
Ga0181344_10243042	3300017754	Freshwater Lake	MNTEQALNNLYNAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKSE
Ga0181356_11116532	3300017761	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKETKAE
Ga0181358_11437942	3300017774	Freshwater Lake	MNTEVALNNLYAAARLAPLPAEQHEILRKSAEVLVEALKPKEPKVE
Ga0181348_10827761	3300017784	Freshwater Lake	MTTEQALNNLYAAARLAQLNAEQHELIRKCAEQLAEALKPKPEPAAQD
Ga0181359_10951031	3300019784	Freshwater Lake	NTEVALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKSE
Ga0211732_11910122	3300020141	Freshwater	NMNTEQALNNIYTAARLAPLTAEQHDIIRKSAEVLVEALKPKDAPKPE
Ga0211731_100458871	3300020205	Freshwater	LYAAARLAPLPAEQHDIIRKSAEVLVEALKPKDAPKPE
Ga0211731_100610352	3300020205	Freshwater	MNTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEAL
Ga0211731_103433363	3300020205	Freshwater	ALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKDAPKPE
Ga0211731_110084142	3300020205	Freshwater	MNTEQALNNLYAAARLAPLPAEQHDILRKSAEVLVEALKPKDAPKPE
Ga0211731_114730431	3300020205	Freshwater	NNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKAE
Ga0208235_10026026	3300020530	Freshwater	MNTETALNNLYAAARLAPLPAEQHDILRKSAEVLVEALKPKEEKKAE
Ga0208486_10494842	3300020556	Freshwater	MNTEQALNNLYAAARLAPLPAEQHDILRKSAEVLVEALKPKEEKKAE
Ga0214162_100003720	3300021108	Freshwater	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKDAPKPE
Ga0194059_10900091	3300021600	Anoxic Zone Freshwater	LYAAARLAPLPAEQHEIIRKSVEVLVEALKPKEEKKAD
Ga0213921_10303072	3300021952	Freshwater	MNTEQALNNIYQAARAAMLTAEQHEIIRKSVEVLVEALKPKEEKKAEXDEWHLRC
Ga0213922_10042485	3300021956	Freshwater	MNTEQALNNIYQAARAAMLTAEQHEIIRKSVEVLVEALKPKEEKKAE
Ga0222714_104124351	3300021961	Estuarine Water	MTTEQALNNLYAASRRAPLTAEEHEILRKSAELLLEAIK
Ga0222712_102504722	3300021963	Estuarine Water	MSTETALNNIYNAARLAPLTADQHDIIRKSAEVLVEALKPKDAPKPE
Ga0222712_105189711	3300021963	Estuarine Water	MTTEQALNNLYAASRRAPLTAEEHEILRKSAELLLEAIKPK
Ga0181354_11395252	3300022190	Freshwater Lake	MTTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKETKAE
Ga0214919_100014055	3300023184	Freshwater	MNTEQALNNLYNAARSAMLTAEQHEIIRKSAEVLVEALKPKEEKKAD
Ga0214919_103170032	3300023184	Freshwater	MNTETALNNIYTAARLAPLTAEQHEIIRKSAEVLVEALKPKEEKKAD
Ga0208147_11622482	3300025635	Aqueous	MNITTEQALNNLYAAARMAPLTAEQHELIRKSGEALAEALKPKTEANAEL
Ga0208784_10906941	3300025732	Aqueous	MTTEQALNNLYAASRRAPLTAEEHEILRKSAEVLLEAIKP
Ga0208916_103217772	3300025896	Aqueous	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEAPKAD
Ga0208942_10338102	3300027627	Freshwater Lentic	MNTETALNNLYQAARLAPLPAEQHDIIRKSAEVLVEALKPKEPKVE
Ga0209188_10120832	3300027708	Freshwater Lake	MNTETALNNLYAAARSAMLTAEQHEIIRKSAEVLVEALKPKEDKKAE
Ga0209297_100071113	3300027733	Freshwater Lake	MNTETALNNLYQAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAE
Ga0209297_10090462	3300027733	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEEKKAD
Ga0209085_11381643	3300027741	Freshwater Lake	MNTEQALNNLYTAARSAMLTAEQHEIIRKSAEVLVEALKPKEEKKAD
Ga0209597_10747182	3300027746	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHEIVRKCAEILAEALKPKEEPKQ
Ga0209084_10735422	3300027749	Freshwater Lake	MNTEQALNNLYQAARSAMLTAEQHEIIRKSVEVLVEALKPKEEKKAD
Ga0209084_10850141	3300027749	Freshwater Lake	LNNLYNAARSAMLTAEQHDIIRKSVEVLVEALKPKEEKKAE
Ga0209084_12816192	3300027749	Freshwater Lake	MNTEQALNNLYNAARSAMLTAEQHDIIRKSVEVLVEALKPKEEKKAE
Ga0209084_12981992	3300027749	Freshwater Lake	ALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEAPKSD
Ga0209596_10367653	3300027754	Freshwater Lake	MNPETALQNLYNATRLAPLTAEQHEFLVTCAKAVAEALKPKDTDNEQP
Ga0209296_13198002	3300027759	Freshwater Lake	MNPETALQNLYNATRLAPLTAEQHEFLITCAKAVAEALKPKDTENEQP
Ga0209088_1000027331	3300027763	Freshwater Lake	MNTEQALNNIYNAARLAPLTAEQHDIIRKSAEVLVEALKPKEEKKAE
Ga0209668_103889892	3300027899	Freshwater Lake Sediment	MNTEQALNNLYAAARLAPLPAEQHEILRKSAEVLVEALKPKEEKKAD
Ga0209048_110702572	3300027902	Freshwater Lake Sediment	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAD
Ga0209191_10433271	3300027969	Freshwater Lake	YGRTRIQLKHMNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAD
Ga0209298_100394012	3300027973	Freshwater Lake	MNTEIALNNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKEAPKAD
Ga0209298_103272251	3300027973	Freshwater Lake	AVASPTCRRSRIQLKHMNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKAD
Ga0209299_11773571	3300027974	Freshwater Lake	MNTEQALNNLYAAARLAPLPAEQHEILRKSAEVLVEALKPKEEKKAE
Ga0247723_10004422	3300028025	Deep Subsurface Sediment	MTTEQALNNLYAAARLAPLPAEQHEILRKSAEVLVEALKPKEAPKAD
Ga0247723_10517762	3300028025	Deep Subsurface Sediment	MNTETALNNLYAAARLAPLPAEQHEILRKSAEVLVEALKPKEEKKAE
Ga0315291_106682452	3300031707	Sediment	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEAPKPE
Ga0315297_113080521	3300031873	Sediment	QLKHMNTETALNNLYAAARLAPLPAEQHEIIRKSVEVLVEALKPKEEKKAD
Ga0315285_101289921	3300031885	Sediment	MNTEQALNNLYNAARAALLPAEQHEIIRKSAEVLVEALKPKEEKKAE
Ga0315274_110323081	3300031999	Sediment	MNTETALNNLYAAARLAPLPAEQHDIIRKSVEVLVEALKPKDAPKPE
Ga0315284_116036232	3300032053	Sediment	NNLYAAARLAPLPAEQHDIIRKSAEVLVEALKPKDAPKPE
Ga0315903_111886972	3300032116	Freshwater	MTNEQYLEMLYAASRRAPLTADDHENVRKAAEALL
Ga0315286_104929632	3300032342	Sediment	MNTETALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKDAPKPE
Ga0315273_123679982	3300032516	Sediment	MNTETALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKDAPKPEXYER
Ga0316226_11457062	3300032562	Freshwater	MTTEQAFNNLYSAARLAPLTADQHEAIKQSAEVLVNALKPKDTSDTSSN
Ga0334994_0073514_3_110	3300033993	Freshwater	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVE
Ga0334994_0358789_346_489	3300033993	Freshwater	MNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKEEKKSE
Ga0335003_0007956_5176_5319	3300033995	Freshwater	MNTEQALNNLYNAARLAPLPAEQHEILRKSAEVLVEALKPKEEKKAD
Ga0335003_0018469_2323_2469	3300033995	Freshwater	MTTEQALNNLYNAARLAPLTAEQHELIRKCAEQLAEALKPKAEPVALD
Ga0334979_0023525_940_1083	3300033996	Freshwater	MNTEQALNNLYQAARLAPLPAEQHDIIRKSAEVLVEALKPKDAPKPE
Ga0335031_0304615_173_316	3300034104	Freshwater	MTTEQALNNLYAAARLAPLPAEQHEILRKSAEVLVEALKPKEEKKSE
Ga0335048_0051761_1_114	3300034356	Freshwater	MNTEQALNNLYNAARLAPLSAEQHEILRKSAEVLVEAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081039

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences