Metagenome Family F081005

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081005
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	66 residues
Representative Sequence	MKLLLSVPGILILAWLGLWVGNTGILVFSAESKIPMTRECHYFIGVSVLKRLEPLADRCPLIRRVGS
Number of Associated Samples	91
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	23.68 %
% of genes from short scaffolds (< 2000 bps)	86.84 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.035 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (14.035 % of family members)
Environment Ontology (ENVO)	Unclassified (31.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.614 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.37% β-sheet: 0.00% Coil/Unstructured: 72.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF07969	Amidohydro_3	32.46
PF00781	DAGK_cat	8.77
PF00877	NLPC_P60	4.39
PF03401	TctC	2.63
PF07908	Obsolete Pfam Family	2.63
PF00072	Response_reg	1.75
PF00149	Metallophos	1.75
PF06745	ATPase	1.75
PF04828	GFA	1.75
PF07690	MFS_1	0.88
PF07883	Cupin_2	0.88
PF13511	DUF4124	0.88
PF00166	Cpn10	0.88
PF03707	MHYT	0.88
PF08327	AHSA1	0.88
PF09335	SNARE_assoc	0.88
PF09084	NMT1	0.88
PF00118	Cpn60_TCP1	0.88
PF00583	Acetyltransf_1	0.88
PF01734	Patatin	0.88
PF13458	Peripla_BP_6	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	17.54
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	4.39
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.63
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.75
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.88
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.88
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.88
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.88
COG3300	MHYT domain, NO-binding membrane sensor	Signal transduction mechanisms [T]	0.88
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.88
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.88
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.88
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.04 %
Unclassified	root	N/A	35.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.04 %
Unclassified	root	N/A	35.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.04 %
Unclassified	root	N/A	35.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.39 %
Unclassified	root	N/A	35.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	28.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.96 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	24.56 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	24.56 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.75 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	24.56 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	0.88 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	0.88 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	24.56 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.88 %
unclassified Ramlibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter	0.88 %
Ideonella alba	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella alba	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	24.56 %
Variovorax sp. KK3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. KK3	0.88 %
Ramlibacter sp. GTP1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. GTP1	0.88 %
Ideonella alba	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella alba	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_121480517	Not Available	549	Open in IMG/M
3300003993\|Ga0055468_10145927	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300004114\|Ga0062593_101600168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	707	Open in IMG/M
3300004463\|Ga0063356_100299060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1994	Open in IMG/M
3300004463\|Ga0063356_102414299	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300004463\|Ga0063356_104022690	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300004480\|Ga0062592_100940434	Not Available	783	Open in IMG/M
3300004643\|Ga0062591_101608489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	655	Open in IMG/M
3300004808\|Ga0062381_10121151	Not Available	841	Open in IMG/M
3300005093\|Ga0062594_102761232	Not Available	545	Open in IMG/M
3300005336\|Ga0070680_100397360	Not Available	1175	Open in IMG/M
3300005341\|Ga0070691_10378085	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300005341\|Ga0070691_10442053	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300005345\|Ga0070692_10033808	All Organisms → cellular organisms → Bacteria → Proteobacteria	2578	Open in IMG/M
3300005354\|Ga0070675_100900751	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300005364\|Ga0070673_100630674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	980	Open in IMG/M
3300005441\|Ga0070700_100089199	All Organisms → cellular organisms → Bacteria → Proteobacteria	2009	Open in IMG/M
3300005444\|Ga0070694_101325445	Not Available	606	Open in IMG/M
3300005549\|Ga0070704_100440430	Not Available	1120	Open in IMG/M
3300005844\|Ga0068862_100708750	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300006845\|Ga0075421_100788639	All Organisms → cellular organisms → Bacteria → Proteobacteria	1095	Open in IMG/M
3300006846\|Ga0075430_100139303	All Organisms → cellular organisms → Bacteria → Proteobacteria	2020	Open in IMG/M
3300006853\|Ga0075420_100400155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1187	Open in IMG/M
3300006876\|Ga0079217_10624170	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300006894\|Ga0079215_11345488	Not Available	554	Open in IMG/M
3300006918\|Ga0079216_10637077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	743	Open in IMG/M
3300006969\|Ga0075419_10713602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	712	Open in IMG/M
3300007004\|Ga0079218_10083230	All Organisms → cellular organisms → Bacteria → Proteobacteria	2133	Open in IMG/M
3300007004\|Ga0079218_11029694	Not Available	829	Open in IMG/M
3300007004\|Ga0079218_11571700	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300009094\|Ga0111539_10078975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. KK3	3870	Open in IMG/M
3300009100\|Ga0075418_12389489	Not Available	577	Open in IMG/M
3300009610\|Ga0105340_1000474	All Organisms → cellular organisms → Bacteria → Proteobacteria	19492	Open in IMG/M
3300009678\|Ga0105252_10134623	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300010371\|Ga0134125_12008567	Not Available	629	Open in IMG/M
3300010399\|Ga0134127_10061633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3146	Open in IMG/M
3300010400\|Ga0134122_12564406	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300010403\|Ga0134123_10026997	All Organisms → cellular organisms → Bacteria	4137	Open in IMG/M
3300011402\|Ga0137356_1027853	All Organisms → cellular organisms → Bacteria → Proteobacteria	1036	Open in IMG/M
3300011402\|Ga0137356_1070103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. GTP1	666	Open in IMG/M
3300011409\|Ga0137323_1019387	All Organisms → cellular organisms → Bacteria → Proteobacteria	1525	Open in IMG/M
3300011413\|Ga0137333_1058474	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300011439\|Ga0137432_1261765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	555	Open in IMG/M
3300012034\|Ga0137453_1044760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	789	Open in IMG/M
3300012164\|Ga0137352_1031303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1021	Open in IMG/M
3300012175\|Ga0137321_1109137	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300012206\|Ga0137380_10179038	All Organisms → cellular organisms → Bacteria → Proteobacteria	1928	Open in IMG/M
3300012892\|Ga0157294_10321465	Not Available	502	Open in IMG/M
3300014881\|Ga0180094_1035381	All Organisms → cellular organisms → Bacteria → Proteobacteria	1030	Open in IMG/M
3300014884\|Ga0180104_1086867	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300014884\|Ga0180104_1205477	Not Available	588	Open in IMG/M
3300014884\|Ga0180104_1235302	Not Available	546	Open in IMG/M
3300015259\|Ga0180085_1117715	Not Available	789	Open in IMG/M
3300015373\|Ga0132257_103340279	Not Available	584	Open in IMG/M
3300015374\|Ga0132255_100779795	Not Available	1424	Open in IMG/M
3300017965\|Ga0190266_10240917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	899	Open in IMG/M
3300018053\|Ga0184626_10288773	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300018063\|Ga0184637_10156216	All Organisms → cellular organisms → Bacteria → Proteobacteria	1406	Open in IMG/M
3300018063\|Ga0184637_10389549	Not Available	832	Open in IMG/M
3300018422\|Ga0190265_10148374	All Organisms → cellular organisms → Bacteria	2289	Open in IMG/M
3300018422\|Ga0190265_11358618	Not Available	826	Open in IMG/M
3300018422\|Ga0190265_11373785	Not Available	822	Open in IMG/M
3300018422\|Ga0190265_12350070	Not Available	634	Open in IMG/M
3300018422\|Ga0190265_13643052	Not Available	514	Open in IMG/M
3300018429\|Ga0190272_10141126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1639	Open in IMG/M
3300018469\|Ga0190270_11676756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	689	Open in IMG/M
3300018469\|Ga0190270_12470902	Not Available	581	Open in IMG/M
3300018469\|Ga0190270_12676786	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300018476\|Ga0190274_10089449	All Organisms → cellular organisms → Bacteria → Proteobacteria	2405	Open in IMG/M
3300018481\|Ga0190271_12319943	Not Available	641	Open in IMG/M
3300025167\|Ga0209642_10723641	Not Available	529	Open in IMG/M
3300025899\|Ga0207642_10118622	Not Available	1361	Open in IMG/M
3300025901\|Ga0207688_10185808	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300025918\|Ga0207662_10098781	Not Available	1807	Open in IMG/M
3300025923\|Ga0207681_10042733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella alba	3029	Open in IMG/M
3300025923\|Ga0207681_10447964	Not Available	1050	Open in IMG/M
3300025926\|Ga0207659_10597694	Not Available	940	Open in IMG/M
3300025930\|Ga0207701_10557692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	977	Open in IMG/M
3300025938\|Ga0207704_10013844	All Organisms → cellular organisms → Bacteria	4053	Open in IMG/M
3300025938\|Ga0207704_11841229	Not Available	520	Open in IMG/M
3300025940\|Ga0207691_10592116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	939	Open in IMG/M
3300025960\|Ga0207651_10611209	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300026075\|Ga0207708_10009903	All Organisms → cellular organisms → Bacteria → Proteobacteria	7077	Open in IMG/M
3300026089\|Ga0207648_10220587	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300027378\|Ga0209981_1007057	Not Available	1510	Open in IMG/M
3300027533\|Ga0208185_1000135	All Organisms → cellular organisms → Bacteria	48185	Open in IMG/M
3300027637\|Ga0209818_1125956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	700	Open in IMG/M
3300027695\|Ga0209966_1088277	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300027778\|Ga0209464_10099571	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300027880\|Ga0209481_10342438	Not Available	762	Open in IMG/M
3300027886\|Ga0209486_10608956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	694	Open in IMG/M
3300027907\|Ga0207428_11109720	Not Available	553	Open in IMG/M
3300027909\|Ga0209382_10755053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1040	Open in IMG/M
3300028589\|Ga0247818_10360885	Not Available	974	Open in IMG/M
3300028589\|Ga0247818_11004029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	590	Open in IMG/M
3300028592\|Ga0247822_10406273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1062	Open in IMG/M
3300028812\|Ga0247825_10237937	Not Available	1264	Open in IMG/M
3300028812\|Ga0247825_10262680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1202	Open in IMG/M
3300028812\|Ga0247825_10643789	Not Available	761	Open in IMG/M
3300028812\|Ga0247825_10739711	Not Available	708	Open in IMG/M
3300031547\|Ga0310887_10210947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1062	Open in IMG/M
3300031547\|Ga0310887_10900833	Not Available	560	Open in IMG/M
3300031547\|Ga0310887_10950407	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300031548\|Ga0307408_100236080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1500	Open in IMG/M
3300031731\|Ga0307405_10498368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	976	Open in IMG/M
3300031852\|Ga0307410_11845031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	538	Open in IMG/M
3300031911\|Ga0307412_11633968	Not Available	589	Open in IMG/M
3300031943\|Ga0310885_10588666	Not Available	615	Open in IMG/M
3300031995\|Ga0307409_101648721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	670	Open in IMG/M
3300032017\|Ga0310899_10187195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	908	Open in IMG/M
3300032144\|Ga0315910_10088868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2260	Open in IMG/M
3300032180\|Ga0307471_100422747	All Organisms → cellular organisms → Bacteria → Proteobacteria	1466	Open in IMG/M
3300033550\|Ga0247829_11593704	Not Available	538	Open in IMG/M
3300033815\|Ga0364946_156359	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.18%
Host-Associated	Host-Associated	29.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.88%
Plants	Host-Associated → Plants	29.82%
Aquatic	Environmental → Aquatic	19.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.42%
Sediment	Environmental → Aquatic → Sediment	16.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.40%
Freshwater	Environmental → Aquatic → Freshwater	1.75%
Marine	Environmental → Aquatic → Marine	0.88%
Floodplain	Environmental → Terrestrial → Floodplain	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.65%
Loam	Environmental → Terrestrial → Soil → Loam	8.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.14%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.28%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.40%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.14%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	14.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.40%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.02%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.14%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.39%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.51%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.63%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011402	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT830_2	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012164	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033815	Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1214805172	3300000956	Soil	MKLLLSVPGVLILAWLGLWASNTGLLVFSADSKLPKTRECSYFIGVSVLKRLEPLADRCPLIRSVGT*
Ga0055468_101459272	3300003993	Natural And Restored Wetlands	MKLILVVIVLGLFWLGLWAADTGILVSSAGSKIPKTRECSYFIGVSVLKRLEPLAERCPLIRKIGT*
Ga0062593_1016001681	3300004114	Soil	MKLLLSIPGLLILAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADRCPLIRGVGS*
Ga0063356_1002990602	3300004463	Arabidopsis Thaliana Rhizosphere	MKSALGLVVLLTLVWLVLWIFNFGVLVYSAETRIPKTRECRYFIGVSVLKRIEPLADRCPLVRTVGK*
Ga0063356_1024142991	3300004463	Arabidopsis Thaliana Rhizosphere	MKLLLSVPGILILAWLGLWAANIGLLVGSSDTRILKTRECSYFVGVSVLKRLEPLADRCPLIRSIGT*
Ga0063356_1040226902	3300004463	Arabidopsis Thaliana Rhizosphere	MKLLLSIPGLLILAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADRCPLVRGVGS*
Ga0062592_1009404342	3300004480	Soil	MKLLLSIPGILILAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRGVGT*
Ga0062591_1016084892	3300004643	Soil	MKLLLSIPGILILLWLGLWVSNTGVLVFSAESKIPVTRDCHYFIGVSVVKRIAPLADRCPLIRSVGT*
Ga0062381_101211512	3300004808	Wetland Sediment	VRMKLLLSIPGILILAWLGLWVSNTGVLVFSAHGKVPLTRECHYFIGVSVLKRLEPLADRCPLVRSVGG*
Ga0062594_1027612322	3300005093	Soil	MKLLLSIPGILILAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRSVGS*
Ga0070680_1003973603	3300005336	Corn Rhizosphere	PGILILAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRGVGT
Ga0070691_103780851	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLSIPGLLILAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADR
Ga0070691_104420532	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKKPAIAIAAVVVLAWLGLWVSDKGVLVSSTDTGILKTRECHYFIGVSVLKRFAPIADRCPVLRTVGP*
Ga0070692_100338084	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLSIPGILVLAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRSVGS*
Ga0070675_1009007513	3300005354	Miscanthus Rhizosphere	MRPVKPLLSIPGLLLLAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADRCPLIRGVGS*
Ga0070673_1006306741	3300005364	Switchgrass Rhizosphere	PGLLLLAWLGLWVSNTGILVFSSQSKIPMTRECNYFIGVSVLKRLEPLAERCPLIRGVGS
Ga0070700_1000891992	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRPVKPLLSIPGLLLLAWLGLWVSNTGILVFSSQSKIPMTRECNYFIGVSVLKRLEPLAERCPLIRGVGS*
Ga0070694_1013254451	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLSIPGLLILAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADRCPLVRSLGS*
Ga0070704_1004404303	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLSIPGILILLWLGLWVSNTGILVFSAESKIPVTRDCHYFIGVSVVKRLAPLA
Ga0068862_1007087502	3300005844	Switchgrass Rhizosphere	MKLLLSVPGILILVWLALWISNTGVLVFSADSKIPMTRECHYFIGVSVLKRLEPLADRCPLVRSLGS*
Ga0075421_1007886392	3300006845	Populus Rhizosphere	MKAGLSLLVMLALAWLGMWIFNLGVLVYSGDTIVPKTRECRYFIGVSVLKRIEPLADRCPLVRSIGS*
Ga0075430_1001393033	3300006846	Populus Rhizosphere	MKLLLSVPGILILAWLGLWVGNTGLLVFSAESKIPMTRECHYFIGVSVLKRLEPLADRCPLIRRVGS*
Ga0075420_1004001552	3300006853	Populus Rhizosphere	MKLLLSVPGILILAWLGLWVGNTGLLVFSAESKIPMTRECHYFIGVSVLKRLEPLADRCPLVRRVGS*
Ga0079217_106241702	3300006876	Agricultural Soil	MKLIVVVLILAFFWLGLWASNTGILVSSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT*
Ga0079215_113454882	3300006894	Agricultural Soil	MKLIVVVIVLGLFWLGLWAADTGILISSADSKIPKTRECRYFIGVSVLKRLEPLADRCPLIRKIGT*
Ga0079216_106370772	3300006918	Agricultural Soil	MKLIVVVLILAFFWLGLWGSNTGILVTSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT*
Ga0075419_107136022	3300006969	Populus Rhizosphere	VPGILILAWLGLWVGNTGILVFSAESKIPMTRECHYFIGVSVLKRLEPLADRCPLIRRVGS*
Ga0079218_100832304	3300007004	Agricultural Soil	MKLILVVIVLGLFWLGLWAANTGILISSADSAIPKTRECRYFIGVSVLKRLEPLADRCPLIRKIGT*
Ga0079218_110296942	3300007004	Agricultural Soil	MKLILAVVILAFFWLGLWASNTGILVSSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT*
Ga0079218_115717002	3300007004	Agricultural Soil	MKLIVVVGILALFWLGLWASNTGILVASADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRVGT*
Ga0111539_100789753	3300009094	Populus Rhizosphere	MKLLLSIPGILILAWLGLWVSNTGVLVLSTESKVPMTRDCHYFIGVSILKRLEPLADRCPLVRSVGR*
Ga0075418_123894893	3300009100	Populus Rhizosphere	MKLLLSIPGILILAWLGLWVSNTGVLVLSAESKIPLTRECHYFIGVSILKRHEPLADRCPLVRRVGG*
Ga0105340_100047419	3300009610	Soil	MKLSLGGVAVLVAAWLGMWATNIGILVFSADSRIPKTRECHYFIGVSVLKRIEPLAERCPLIRSIGT*
Ga0105252_101346232	3300009678	Soil	VKLLLSVPGVLILAWLGLWVSNTGILVFSADGKIPATRDCSYFIGVSVLKRIEPLASRCPLVRNVGS*
Ga0134125_120085672	3300010371	Terrestrial Soil	MKLLLSIPGILILLWLGLWVSNTGILVFSAESKIPVTRDCHYFIGVSVVKRIAPLADRCPLVRSVGS*
Ga0134127_100616333	3300010399	Terrestrial Soil	MKLLLSIPGILILLWLGLWVSNTGILVFSAESKIPVTRDCLYFIGVSVVKRIAPLADRCPLVRSVGS*
Ga0134122_125644062	3300010400	Terrestrial Soil	MKLSIAAVVLLVGVWLGLWVGNTGVLVYSGDTRIPKTRECHYFIGVSVLKRIEPLADRCMVFKTLGK*
Ga0134123_100269973	3300010403	Terrestrial Soil	MKLLLSIPGILILLWLGLWVSNTGVLVFSAESKIPVTRDCHYFIGVSVVKRIAPLADRCPLVRSVGS*
Ga0137356_10278532	3300011402	Soil	MKLLALPGLLVLAWLGLWVSNTGILVVSADSMIPKTRECSYFIGVSILKRIEPLADRCPLVRRIGT*
Ga0137356_10701032	3300011402	Soil	MKPALAAVAVLVVAWLGMWAFNVGVLVYSTDTVIPKTRECRYFVGVSVLKRIEPLADRCPLVRRIGT*
Ga0137323_10193872	3300011409	Soil	MKLLLAAVAVLVVAWLGMWAFNVGVLVYSTDTVIPKTRECRYFVGVSVLKRIEPLADRCPLVRRIGT*
Ga0137333_10584742	3300011413	Soil	MKLVLAAVGLLAVVWLGLWGSNTGILVFSADSKIPATRECHYFIGVSVLKRLEPLADRCPLIRSVGT*
Ga0137432_12617652	3300011439	Soil	MKLSIAALVLLAGVWLGLWVGNTGVLVYSGDTRIPKTRECHYFIGVSVLKRIEPLAERCMVFRTLGK*
Ga0137453_10447603	3300012034	Soil	MKLILAAPGLLIVVWLVLWASNTGVLVFSADSKIPATRECHYFIGVSVLKRLEPLADRCPLIRTVGS*
Ga0137352_10313032	3300012164	Soil	MKLLALPGLLILAWLGLWVSNTGILVVSADSMIPKTRECSYFIGVSILKRIEPLADRCPLVRRIGT*
Ga0137321_11091371	3300012175	Soil	VAWLGMWAFNVGVLVYSTDTVIPKTRECRYFVGVSVLKRIEPLADRCPLVRTLGT*
Ga0137380_101790381	3300012206	Vadose Zone Soil	MKLSIAALVLLAGLWLGLWIGNTGVLVYSGDTRIPKMRECHYFIGVSILKRIEPLADRCMVFRTLGK*
Ga0157294_103214651	3300012892	Soil	MKLLLSVPGILILVWLALWISNTGVLVFSADSKIPMTRECHYFIGVSVLKRLEPLADRCPQVRSLGS*
Ga0180094_10353812	3300014881	Soil	MKLILAAVAVLVVAWLGMWAFNVGVLVYSTDTVIPKTRECRYFVGVSVLKRIEPLADRCPLVRRIGT*
Ga0180104_10868673	3300014884	Soil	TSALMKLLALPGLLVLAWLGLWVSNTGILVVSADSMIPKTRECSYFIGVSILKRIEPLADRCPLVRRIGT*
Ga0180104_12054771	3300014884	Soil	MKLILAAVAVLVVAWLGMWAFNVDVLVYSTDTVIPKTRECRYFVGVSVLKRIEPLADRCPLVRRIGT*
Ga0180104_12353021	3300014884	Soil	MKPALAAVAVLVVAWLGMWAFNVGVLVYSTDTVIPKTRECRYFVGVSVLNRIEPLADRCPLVRRIGT*
Ga0180085_11177152	3300015259	Soil	MKLILAAVAVLVVAWLGMWAFNVGVLVYSTDTVIPKTRECRYFVGVSVLKRIEALADRCPLVRRIGT*
Ga0132257_1033402792	3300015373	Arabidopsis Rhizosphere	MKLLLSIPGILILLWLGLWVSNTGILVFSAESKIPVTRDCHYFIGVSVVKRIAPLAD
Ga0132255_1007797951	3300015374	Arabidopsis Rhizosphere	MKLLLSIPGILILLWLGLWVSNTGILVFSAESKIPVTRDCHYFIGVSVVKRIAPLADRCPLIRSVGS*
Ga0190266_102409171	3300017965	Soil	LILAWLGLWVSNTGILVLSADSKIPATRECSYFIGVSVLKRLEPLADRCPLIRRVGT
Ga0184626_102887732	3300018053	Groundwater Sediment	MKLSIAALVLLVGVWLGLWVGNTGVLVYSGDTRIPKTRECHYFIGVSVLKRIEPLAERCMVFRTLGK
Ga0184637_101562162	3300018063	Groundwater Sediment	MKLSIAALVLLAGVWLGLWVGNTGVLIYSGDTRIPKTRECHYFIGVSVLKRIEPLADRCMVFRTLGR
Ga0184637_103895493	3300018063	Groundwater Sediment	PRRMKLSIAALVLLAGVWLGLWVGNTGLLVYSGDTRIPKTRECHYFIGVSVLKRIEPLADRCMVFRTLGK
Ga0190265_101483743	3300018422	Soil	MKLILVVVILALFWLGLWASNTGILVTSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT
Ga0190265_113586182	3300018422	Soil	MKLILVVIVLGLFWLGLWAANTGILVSSADSKIPKTRECSYFIGVSVLKRLAPLAGRCPLIRKIGT
Ga0190265_113737852	3300018422	Soil	MKLIVVIVILAFFWLGLWASNTGFLVSSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT
Ga0190265_123500701	3300018422	Soil	MKLILVLVILALFWLGLWGSNTGILVASADSRIPKTRECSYFIGVSVLKRLEPLADRCPL
Ga0190265_136430521	3300018422	Soil	MKLNLVGVAFLVVVWLGLWASNTGLLVFSADSKIPKTRECRYFIGVSVLKRIEPLADRCPLIRKIGT
Ga0190272_101411262	3300018429	Soil	MKLILVVIVLGLFWLGLWAANTGILVSSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRKIGT
Ga0190270_116767562	3300018469	Soil	MKLILVVIVLGLFWLGLWAANTGILISSADSKIPKTRECRYFIGVSVLKRLEPLADRCPLIRKIGT
Ga0190270_124709022	3300018469	Soil	MKLLLSVPGVLILAWLGLWASNTGILVFSADSKLPKTRECSYFIGVSVLKRLEPLADRCPLIRSVGT
Ga0190270_126767861	3300018469	Soil	MKLSLAGVVVLVVAWLAMWATNTGVLVFSAASKIPKTRECHYFIGVSVLKRIEPLADRCPLVRGIGT
Ga0190274_100894494	3300018476	Soil	MKLLLSVPGVLILAWLGLWASNTGLLVFSADSKLPKTRECSYFIGVSVLKRLEPLADRCPLIRSVGT
Ga0190271_123199432	3300018481	Soil	MKLLLSVPGVLILAWLGLWASNTGLLVFSADSKLPATRECSYFIGVSVLKRIEPLASRCPLVRNVGT
Ga0209642_107236411	3300025167	Soil	MKLVAAMVILALFWLGLWASNTGILVASADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRKIGT
Ga0207642_101186223	3300025899	Miscanthus Rhizosphere	MKLLLSIPGILILAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRSVGS
Ga0207688_101858083	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLSIPGLLILAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADRC
Ga0207662_100987815	3300025918	Switchgrass Rhizosphere	MKLLLSIPGILILLWLGLWVSNTGILVFSAESKIPVTRDCHYFIGVSVVKRIAPLADRCPLVRSVGG
Ga0207681_100427332	3300025923	Switchgrass Rhizosphere	MKLLLSIPGILILAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRGVGT
Ga0207681_104479643	3300025923	Switchgrass Rhizosphere	MKLLLSVPGILILVWLALWISNTGVLVFSADSKIPMTRECHYFIGVSVLKRLEPLADRCPLVRSLGS
Ga0207659_105976943	3300025926	Miscanthus Rhizosphere	MRPVKPLLSIPGLLLLAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADRCP
Ga0207701_105576921	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLSIPGLLILAWLGLWVSNTGILVFSSQSKIPMTRECNYFIGVSVLKRLEPLAERCPLIRGVGS
Ga0207704_100138444	3300025938	Miscanthus Rhizosphere	MKLLLSIPGILVLAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRSVGS
Ga0207704_118412291	3300025938	Miscanthus Rhizosphere	MKLLLSIPGILILLWLGLWVSNTGVLVFSAESKIPVTRDCHYFIGVSILKRVAPLADRCPLVR
Ga0207691_105921162	3300025940	Miscanthus Rhizosphere	MKLLLSIPGLLILAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLADRCPLIRGVGS
Ga0207651_106112093	3300025960	Switchgrass Rhizosphere	MRPVKPLLSIPGLLLLAWLGLWVSNTGILVFSSQSKIPMTRECNYFIGVSVLKRLEPLA
Ga0207708_100099031	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLSIPGILILAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVR
Ga0207648_102205874	3300026089	Miscanthus Rhizosphere	MRPVKPLLSIPGLLLLAWLGLWVSNTGILVFSSQSKIPMTRECHYFIGVSVLKRLEPLAERCPLIRGVGS
Ga0209981_10070571	3300027378	Arabidopsis Thaliana Rhizosphere	MKLIVVVVILALFWLGLWAANTGILVASADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT
Ga0208185_100013512	3300027533	Soil	MKLSLGGVAVLVAAWLGMWATNIGILVFSADSRIPKTRECHYFIGVSVLKRIEPLAERCPLIRSIGT
Ga0209818_11259561	3300027637	Agricultural Soil	HAPPMKLIVVVLILAFFWLGLWASNTGILVSSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT
Ga0209966_10882771	3300027695	Arabidopsis Thaliana Rhizosphere	VVLLTLVWLVLWIFNFGVLVYSAETRIPKTRECRYFIGVSVLKRIEPLADRCPLVRTVGK
Ga0209464_100995712	3300027778	Wetland Sediment	VRMKLLLSIPGILILAWLGLWVSNTGVLVFSAHGKVPLTRECHYFIGVSVLKRLEPLADRCPLVRSVGG
Ga0209481_103424381	3300027880	Populus Rhizosphere	MKLLLSVPGILILAWLGLWVGNTGILVFSAESKIPMTRECHYFIGVSVLKRLEPLADRCPLIRRVGS
Ga0209486_106089562	3300027886	Agricultural Soil	VTCPPMKLILVVIVLGLFWLGLWAANTGILVSSADSAIPKTRECRYFIGVSVLKRLEPLADRCPLIRKIGT
Ga0207428_111097201	3300027907	Populus Rhizosphere	MKLLLSIPGILILAWLGLWVSNTGVLVLSTESKVPMTRDCHYFIGVSILKRLEPLADRCPLVRSVGR
Ga0209382_107550532	3300027909	Populus Rhizosphere	MKAGLSLLVMLALAWLGMWIFNLGVLVYSGDTIVPKTRECRYFIGVSVLKRIEPLADRCPLVRSIGS
Ga0247818_103608853	3300028589	Soil	MKLLLSIPGILILAWLGLWVSNTGILVFSAESKLPMTRDCHYFIGVSILKRVAPLADRCPLVRSVGT
Ga0247818_110040292	3300028589	Soil	MKLLLSIPGILILLWLGLWVSNTGVLVFSAESKIPVTRDCHYFIGVSVVKRIAPLADRCPLIRSVGT
Ga0247822_104062732	3300028592	Soil	MKLLLSVPGILILAWLGLWVGNTGLLVFSAESKIPMTRECHYFIGVSVLKRLEPLADRCPLIRRVGS
Ga0247825_102379373	3300028812	Soil	MKLILVVIVLGLFWLGLWAANTGILISSADSAIPKTRECRYFIGVSVLKRLEPLADRCPLIRKIGT
Ga0247825_102626802	3300028812	Soil	MKLLLSVPGVLILAWLGLWASNTGILVFSADGKIPATRECSYFIGVSVLKRIAPLADRCPLVRNVGT
Ga0247825_106437892	3300028812	Soil	MKLLLSIPGILVLAWLGLWVSNTGVLVFSAESKIPMTRDCHYFIGVSVLKRVAPLADRCPLVRGVGS
Ga0247825_107397111	3300028812	Soil	LVVIVLGLFWLGLWAANTGILISSADSKIPKTRECRYFIGVSVLKRLEPLADRCPLIRKIGT
Ga0310887_102109471	3300031547	Soil	MRPVKPLLSIPGLLLLAWLGLWVSNTGILVFSSQSKIPMTRECNYFIGVSVLKRLEPLAERCPLIRGVGS
Ga0310887_109008331	3300031547	Soil	CARMKLLLSIPGILVLAWLGLWVSNTGVLVFSAESKIPMTRDCHYFIGVSVLKRVAPLADRCPLVRGVGS
Ga0310887_109504071	3300031547	Soil	KRIGQRAVLAILLPGVTCRRMKLLLSVPGILILVWLALWISNTGVLVFSADSKIPMTRECHYFIGVSVLKRLEPLADRCPLVRSLGS
Ga0307408_1002360803	3300031548	Rhizosphere	MKLIAVLVILAFFWLGLWASNTGILVTSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT
Ga0307405_104983682	3300031731	Rhizosphere	MKLIVVVIVLGLFWLGLWAANTGILISSADSRIPKTRECRYFIGVTVLKRLEPLADRCPLVRKVGT
Ga0307410_118450311	3300031852	Rhizosphere	ILILAFFWLGLWASNTGILVTSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGS
Ga0307412_116339682	3300031911	Rhizosphere	MKLILVVIVLGLFWLGLWAADTGILISSADSKLPKTRECRYFIGVSVLKRLEPLADRCPLIRKIGT
Ga0310885_105886661	3300031943	Soil	MKLLLSVPGILILVWLALWISNTGVLVFSADSKIPMTRECHYFIGVSVLKRLEPLADRCPLVRS
Ga0307409_1016487212	3300031995	Rhizosphere	MKLIVAMAILAFFWLGLWASNTGILVTSADSKIPKTRECSYFIGVSVLKRLEPLADRCPLIRRIGT
Ga0310899_101871952	3300032017	Soil	TCRRMKLLLSVPGILILVWLALWISNTGVLVFSADSKIPMTRECHYFIGVSVLKRLEPLADRCPLVRSLGS
Ga0315910_100888682	3300032144	Soil	MKLILVVIVLGLFWLGLWAADTGILISSADSKIPKTRECRYFIGVSVLKRLEPLAERCPLTRKIGT
Ga0307471_1004227472	3300032180	Hardwood Forest Soil	MKLSIAALVLLVGVWLGLWVGNTGVLVYSGETKIPKTRECHYFIGVSVLRRIEPLAERCMVFRTLGK
Ga0247829_115937041	3300033550	Soil	MKLLLSVPGILILAWLGLWVGNTGLLVFSAESKIPMTRECHYFIGVSVLKRLEPLADRCPLVRRVGS
Ga0364946_156359_94_297	3300033815	Sediment	MKLSIAALVLLAGVWLGLWVGNTGVLVYSGDTRIPKTRECHYFIGVSVLKRIEPLAERCMVFRTLGK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081005

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences