Metagenome / Metatranscriptome Family F080952

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080952
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	65 residues
Representative Sequence	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWVAERST
Number of Associated Samples	79
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.11 %
% of genes near scaffold ends (potentially truncated)	61.40 %
% of genes from short scaffolds (< 2000 bps)	81.58 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.982 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (40.351 % of family members)
Environment Ontology (ENVO)	Unclassified (55.263 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.140 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.85% β-sheet: 24.62% Coil/Unstructured: 61.54%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13561	adh_short_C2	14.91
PF00106	adh_short	7.89
PF04392	ABC_sub_bind	3.51
PF10028	DUF2270	2.63
PF13186	SPASM	1.75
PF01068	DNA_ligase_A_M	1.75
PF08447	PAS_3	1.75
PF06850	PHB_depo_C	0.88
PF13365	Trypsin_2	0.88
PF03450	CO_deh_flav_C	0.88
PF02894	GFO_IDH_MocA_C	0.88
PF00313	CSD	0.88
PF00589	Phage_integrase	0.88
PF07724	AAA_2	0.88
PF01609	DDE_Tnp_1	0.88
PF01165	Ribosomal_S21	0.88
PF03060	NMO	0.88
PF13493	DUF4118	0.88
PF01555	N6_N4_Mtase	0.88
PF03401	TctC	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.51
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.75
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.75
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.88
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.88
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.88
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.88
COG4553	Poly-beta-hydroxyalkanoate depolymerase	Lipid transport and metabolism [I]	0.88
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.88
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.88
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.88
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.88
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.88
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.88
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.88
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.88
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.88
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.88
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.98 %
Unclassified	root	N/A	7.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.98 %
Unclassified	root	N/A	7.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.98 %
Unclassified	root	N/A	7.02 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.44 %
Unclassified	root	N/A	7.02 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	71.05 %
Unclassified	root	N/A	7.02 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	53.51 %
Unclassified	root	N/A	7.02 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.14 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	53.51 %
Unclassified	root	N/A	7.02 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.51 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	53.51 %
Unclassified	root	N/A	7.02 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.63 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	53.51 %
Unclassified	root	N/A	7.02 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	53.51 %
Unclassified	root	N/A	7.02 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.88 %
Bradyrhizobium sp. Y-H1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Y-H1	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10057940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	996	Open in IMG/M
3300004268\|Ga0066398_10098486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300005179\|Ga0066684_10704612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300005332\|Ga0066388_100475042	All Organisms → cellular organisms → Bacteria → Proteobacteria	1889	Open in IMG/M
3300005332\|Ga0066388_101173531	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300005332\|Ga0066388_102423023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300005332\|Ga0066388_102607906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	921	Open in IMG/M
3300005332\|Ga0066388_105514427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300005363\|Ga0008090_10212426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1345	Open in IMG/M
3300005468\|Ga0070707_100183749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2038	Open in IMG/M
3300005713\|Ga0066905_100583700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300005713\|Ga0066905_100920284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	766	Open in IMG/M
3300005764\|Ga0066903_100703155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1782	Open in IMG/M
3300005764\|Ga0066903_102080143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1092	Open in IMG/M
3300005764\|Ga0066903_104503136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	743	Open in IMG/M
3300005764\|Ga0066903_105092584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300005764\|Ga0066903_105915263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300005764\|Ga0066903_106070440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300006953\|Ga0074063_10045445	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300009143\|Ga0099792_10792571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300009792\|Ga0126374_10057419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2012	Open in IMG/M
3300009792\|Ga0126374_10744494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	742	Open in IMG/M
3300010043\|Ga0126380_10049559	All Organisms → cellular organisms → Bacteria → Proteobacteria	2259	Open in IMG/M
3300010046\|Ga0126384_11195433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300010360\|Ga0126372_10243590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1537	Open in IMG/M
3300010361\|Ga0126378_10014670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6560	Open in IMG/M
3300010362\|Ga0126377_10002663	All Organisms → cellular organisms → Bacteria → Proteobacteria	12378	Open in IMG/M
3300010366\|Ga0126379_10627789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1163	Open in IMG/M
3300010366\|Ga0126379_11229604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	855	Open in IMG/M
3300010366\|Ga0126379_13130971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300010376\|Ga0126381_100178530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2818	Open in IMG/M
3300010376\|Ga0126381_100306827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2176	Open in IMG/M
3300010376\|Ga0126381_101020093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1194	Open in IMG/M
3300010376\|Ga0126381_101718985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	906	Open in IMG/M
3300010376\|Ga0126381_101902505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	858	Open in IMG/M
3300012363\|Ga0137390_11946543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300012971\|Ga0126369_11663554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300012971\|Ga0126369_13277020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300012971\|Ga0126369_13573543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300016270\|Ga0182036_11512996	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300016294\|Ga0182041_10034188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3293	Open in IMG/M
3300016294\|Ga0182041_10312289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1307	Open in IMG/M
3300016294\|Ga0182041_10563278	Not Available	997	Open in IMG/M
3300016319\|Ga0182033_10163234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1735	Open in IMG/M
3300016319\|Ga0182033_10367065	Not Available	1208	Open in IMG/M
3300016319\|Ga0182033_10586742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300016319\|Ga0182033_10592123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	962	Open in IMG/M
3300016357\|Ga0182032_11690094	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300016404\|Ga0182037_11598445	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300016422\|Ga0182039_10692586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300016445\|Ga0182038_11647678	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300016445\|Ga0182038_11733235	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300017657\|Ga0134074_1253083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300021178\|Ga0210408_10180000	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300021560\|Ga0126371_12119961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300021560\|Ga0126371_12337003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300025910\|Ga0207684_11020777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300026304\|Ga0209240_1076201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1242	Open in IMG/M
3300026548\|Ga0209161_10427794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300027527\|Ga0209684_1002411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3224	Open in IMG/M
3300027654\|Ga0209799_1010105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2015	Open in IMG/M
3300027654\|Ga0209799_1070982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300027903\|Ga0209488_10207101	Not Available	1477	Open in IMG/M
3300031543\|Ga0318516_10314369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300031543\|Ga0318516_10366955	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300031543\|Ga0318516_10575316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300031544\|Ga0318534_10218143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1101	Open in IMG/M
3300031561\|Ga0318528_10006482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5126	Open in IMG/M
3300031564\|Ga0318573_10186769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300031573\|Ga0310915_10089382	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300031640\|Ga0318555_10670332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031681\|Ga0318572_10521827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300031682\|Ga0318560_10148956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1238	Open in IMG/M
3300031682\|Ga0318560_10222719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	1010	Open in IMG/M
3300031713\|Ga0318496_10344651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300031719\|Ga0306917_10444475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1015	Open in IMG/M
3300031724\|Ga0318500_10475650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300031744\|Ga0306918_10142550	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300031748\|Ga0318492_10757476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300031763\|Ga0318537_10121483	All Organisms → cellular organisms → Bacteria → Proteobacteria	970	Open in IMG/M
3300031764\|Ga0318535_10510293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031768\|Ga0318509_10150573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1283	Open in IMG/M
3300031769\|Ga0318526_10151233	All Organisms → cellular organisms → Bacteria → Proteobacteria	943	Open in IMG/M
3300031770\|Ga0318521_10649953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300031778\|Ga0318498_10153536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1048	Open in IMG/M
3300031781\|Ga0318547_10375970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300031797\|Ga0318550_10228768	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300031805\|Ga0318497_10540091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300031833\|Ga0310917_10967264	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300031835\|Ga0318517_10016342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2783	Open in IMG/M
3300031859\|Ga0318527_10249523	Not Available	754	Open in IMG/M
3300031912\|Ga0306921_12682771	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031941\|Ga0310912_11384796	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031942\|Ga0310916_10434704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1117	Open in IMG/M
3300031942\|Ga0310916_11377962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300031942\|Ga0310916_11694757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300031945\|Ga0310913_11048663	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300031946\|Ga0310910_11350651	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300031947\|Ga0310909_10593647	Not Available	925	Open in IMG/M
3300032001\|Ga0306922_11414940	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300032035\|Ga0310911_10052138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Y-H1	2135	Open in IMG/M
3300032041\|Ga0318549_10012978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2978	Open in IMG/M
3300032041\|Ga0318549_10357994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300032043\|Ga0318556_10662638	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300032052\|Ga0318506_10191210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300032055\|Ga0318575_10557211	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300032059\|Ga0318533_10037671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3167	Open in IMG/M
3300032064\|Ga0318510_10491352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300032066\|Ga0318514_10043184	Not Available	2158	Open in IMG/M
3300032094\|Ga0318540_10398326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	665	Open in IMG/M
3300032094\|Ga0318540_10545523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300032261\|Ga0306920_100150113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3472	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.33%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.75%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	40.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100579401	3300000597	Forest Soil	MPXPSEPFAAVYEDRNRLGVIVARTARGGFEAYAADDHCLGVFPTPRKAADADHPDAPVGQPKAAGTDPNAVG*
Ga0066398_100984861	3300004268	Tropical Forest Soil	MPVASEPFAVVYEERNRLGVIVARMRRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTA
Ga0066684_107046121	3300005179	Soil	MPVPSEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCVGRFPTPREAAAAITMTRPW
Ga0066388_1004750423	3300005332	Tropical Forest Soil	MPVPSERFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWVAERST*
Ga0066388_1011735312	3300005332	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTAPN*
Ga0066388_1024230232	3300005332	Tropical Forest Soil	MPIPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPSPRKAAAAITMTRPWVAQKTAGTDPNAVD*
Ga0066388_1026079063	3300005332	Tropical Forest Soil	EPFAAVYEDRNRLGVIVARGGFEAYAADDHCLGVFPTPRKAADAITLTRPWVNQKPLEQTPTQSADSR*
Ga0066388_1055144271	3300005332	Tropical Forest Soil	MPVASEPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMKRPWVGRTELSQLANC*
Ga0008090_102124262	3300005363	Tropical Rainforest Soil	MPVPSEPFAAVYEDRNRLGVIVARTARGGFEAYAADDHCLGVFPTPRKAADAITLTRPWANQKPPEQTRTQSADSR*
Ga0070707_1001837492	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSVPSEPFAAVYEDRNRLGVIVARTGRGGFEAFAADDHCLGLFRTPREAAAAITTTRPWVV*
Ga0066905_1005837002	3300005713	Tropical Forest Soil	MPIPTEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPSPRKAAAAITMTRPWVAQKTAGTSPNAVD*
Ga0066905_1009202841	3300005713	Tropical Forest Soil	MPVASEPFAVVYEERNRLGVIVARMRRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTAPN*
Ga0066903_1007031554	3300005764	Tropical Forest Soil	MPIPSEPFAAVYEDRNRLGVIVARGGFEAYAADDHCLGVFPTPRKAADAITLTRPWVNQKPLEQTPTQSADSR*
Ga0066903_1020801432	3300005764	Tropical Forest Soil	MSIWHIIMLAFAAVYEDRNRLGVIAARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAERST*
Ga0066903_1045031362	3300005764	Tropical Forest Soil	MPVPSEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITVTRPWVARMTANTAPN*
Ga0066903_1050925842	3300005764	Tropical Forest Soil	MSVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRAAAAAITKARPRDTRVISSA
Ga0066903_1059152632	3300005764	Tropical Forest Soil	MPVASEPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMTRPWVGRTELSQLANC*
Ga0066903_1060704402	3300005764	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTAP
Ga0074063_100454455	3300006953	Soil	AAVYEDRNRLGVIVARMGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWVAERST*
Ga0099792_107925711	3300009143	Vadose Zone Soil	MPVASEPFAAVYEERNRLGVIVARAGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTVPN*
Ga0126374_100574193	3300009792	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARMRRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVAR
Ga0126374_107444941	3300009792	Tropical Forest Soil	MPVASEPFAVVYEERNRLGVIVARMRRGGFEAYAADDNCLGLFPTPREAAAAITMTRPWVARMTANTASKSGGAGVLG
Ga0126380_100495591	3300010043	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPW
Ga0126384_102460755	3300010046	Tropical Forest Soil	EDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMTAEYSPN*
Ga0126384_111954331	3300010046	Tropical Forest Soil	MPVPSEPFAAVYEDRNRLGVIVARTARGGFEAYAADDHCLGVFPTPRKAADVITLTRPWANQKPPEQTPTQSADSR*
Ga0126372_102435904	3300010360	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWV
Ga0126378_100146701	3300010361	Tropical Forest Soil	AMPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTAPN*
Ga0126377_1000266314	3300010362	Tropical Forest Soil	MPVASEPFAVVYEERNRLGVIVARMRRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTASKSGGAGVLG*
Ga0126379_106277891	3300010366	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTASKSGGAGVLG*
Ga0126379_112296043	3300010366	Tropical Forest Soil	AAVYEDRNRLGVIVARTARGGFEAYAADDHCLGVFPTPRKAADVITLTRPLANQKPPEQTPTQSADSR*
Ga0126379_131309711	3300010366	Tropical Forest Soil	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAERST*
Ga0126381_1001785303	3300010376	Tropical Forest Soil	MPVPSEPFAAGYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTRARPLPRSTMTRPWVARMTANTAPN*
Ga0126381_1003068271	3300010376	Tropical Forest Soil	MPVASEPFAVVYEERNRLGVIVARMRRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVAR
Ga0126381_1010200933	3300010376	Tropical Forest Soil	MPVPSEPFAAVYEDRNRLGVIVARTARGGFEAYAADDHCLGVFPTPRKAADAITLTRPWVNQKPLEQTPTQSADSR*
Ga0126381_1017189852	3300010376	Tropical Forest Soil	MSVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCCLGLFPTPRAAAAAITKARPWVQSSDFA
Ga0126381_1019025053	3300010376	Tropical Forest Soil	MSIWHIIMLAFAAVYEDQNRLGVIAARIGRGGFEAYAADNHCLGLFPTPREAAAAITTMRPWVAERST*
Ga0137390_119465432	3300012363	Vadose Zone Soil	MPVSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRP
Ga0126369_116635542	3300012971	Tropical Forest Soil	MPVPSEPFAAVYEDRNRLGVIVARTARGGFEAYAADDHCLGVFPTPRKAADVITLTRPLANQKPPEQTPTQSADSR*
Ga0126369_132770202	3300012971	Tropical Forest Soil	MSVPSEPFAAVYEDRNRLDVIVARTGRGGFEAYAADDHCLGLFPTPRAAAAAITKARP
Ga0126369_135735431	3300012971	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMT
Ga0182036_115129961	3300016270	Soil	YDRSRLGVIFARGRNGFEAYAADDHSLGLLPSPRKAAAAITTTRPWIAERSA
Ga0182041_100341886	3300016294	Soil	MPVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMMRPWATQKPQGQTPAQ
Ga0182041_103122893	3300016294	Soil	MSIWHIIMLAFAAVYEDRNRLGVIAARIGRGGFEASAADDHCLGLFPTPREAAAAITTMRPWVAEHST
Ga0182041_105632781	3300016294	Soil	MPIPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMMRPWATQKPQGQ
Ga0182033_101632341	3300016319	Soil	VYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMMRPWATQKPQGQTPAQSADPH
Ga0182033_103670651	3300016319	Soil	MSVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWV
Ga0182033_105867423	3300016319	Soil	MPVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPSPRKAAAAITMTRPWVAQKTAGTDPNA
Ga0182033_105921231	3300016319	Soil	MPVASEPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMMRPWVGRTELSQLSNC
Ga0182032_116900942	3300016357	Soil	FAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWIAERSA
Ga0182037_115984451	3300016404	Soil	FAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERST
Ga0182039_106925861	3300016422	Soil	MSVPSESFAAVYEDRNRLGVIVARTGRDGFGAYAADDHCLGLFSTPREAAAAITMARPWVARM
Ga0182038_116476782	3300016445	Soil	YEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERST
Ga0182038_117332352	3300016445	Soil	AVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWIAERSA
Ga0134074_12530832	3300017657	Grasslands Soil	MPVPSEPFAAVYEEQNRLGVIVARIGRGGFEAYAADDHCVGLFPTPREAAAAITMTRPWAAR
Ga0210408_101800003	3300021178	Soil	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWVAERST
Ga0126371_121199612	3300021560	Tropical Forest Soil	LGVIVARGGFEAYAADDHCLGVFPTPRKAADAITLTRPWVNQKPLEQTPTQSADSR
Ga0126371_123370031	3300021560	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANSPKLSKGRRNTVF
Ga0207684_110207771	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SVPSEPFAAVYEDRNRLGVIVARTGRGGFEAFAADDHCLGLFRTPREAAAAITTTRPWVV
Ga0209240_10762012	3300026304	Grasslands Soil	MPVSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWV
Ga0209161_104277941	3300026548	Soil	MPVPSEPFAAVYEEQNRLGVIVARIGRGGFEAYAADDHCVGLFPTPREAAAAITMTRPWAARTTAE
Ga0209684_10024113	3300027527	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARMRRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTASKSGGAGVLG
Ga0209799_10101052	3300027654	Tropical Forest Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTAPN
Ga0209799_10709823	3300027654	Tropical Forest Soil	FAVVYEERNRLGVIVARMRRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTASKSGGAGVLG
Ga0209488_102071011	3300027903	Vadose Zone Soil	MPVASEPFAAVYEERNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMTRPWVARMTANTVPN
Ga0318516_103143693	3300031543	Soil	MPVASEPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMTRPWVGRTELSQLANC
Ga0318516_103669552	3300031543	Soil	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERST
Ga0318516_105753161	3300031543	Soil	MLAFAAVYEDRNRLGVIAARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAERS
Ga0318534_102181431	3300031544	Soil	MSIWHIIMLAFAAVYEDRNRLGVIAARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAERST
Ga0318528_100064826	3300031561	Soil	MSIWHIIMLAFAAVYEDRNRLGVIAARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAEHST
Ga0318573_101867692	3300031564	Soil	MPVPSEPFAAVYEDRNRLGVIVARIGSGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERST
Ga0310915_100893822	3300031573	Soil	MPIPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMTRPWATQKPPGQTPAQSADPY
Ga0318555_106703322	3300031640	Soil	VASEPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMTRPWVGRTELSQLANC
Ga0318572_105218273	3300031681	Soil	MPVASEPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMTRPWVGRTELSQLAN
Ga0318560_101489561	3300031682	Soil	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWVAERSI
Ga0318560_102227191	3300031682	Soil	YDRAHRAFASVYYDRSRLGVIFARGRNGFEAYAADDHSLGLFPSPRKAAAAITTTRPWIAERSA
Ga0318496_103446511	3300031713	Soil	MSVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMTAE
Ga0306917_104444751	3300031719	Soil	GVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMMRPWATQKPQGQTPAQSADPH
Ga0318500_104756502	3300031724	Soil	MSVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMTAEY
Ga0306918_101425502	3300031744	Soil	MPVASEPFASVYEERNRLGVIVVRSGRGGFEAYVADDHCLGLFLTPREAAAAITMTRPWVGRTELSQLANC
Ga0318492_107574761	3300031748	Soil	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERS
Ga0318537_101214832	3300031763	Soil	MTVLIEPFASVYYDRRLGVIFARGRNGFEAYAADDHSLGLLPSRRKAAAAITTTRPWIAERSA
Ga0318535_105102931	3300031764	Soil	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMTAE
Ga0318509_101505733	3300031768	Soil	MPVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMTRPWATQKPPGQTPAQSADPY
Ga0318526_101512331	3300031769	Soil	MTVLIEPFASVYYDRSRLGVIFARGRNGFEAYAADDHSLGLLPSRRKAAAAITTTRPWIAERSA
Ga0318521_106499531	3300031770	Soil	MPVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPSPRKAAAAITMTRPWVAQKTAGTDPNAID
Ga0318498_101535363	3300031778	Soil	MSIWHIIMLAFAAVYEDRNRLGVFAARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAEHST
Ga0318547_103759702	3300031781	Soil	MPIPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMMRPWATQKPQGQTPAQSADPH
Ga0318550_102287681	3300031797	Soil	MPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWIAERSA
Ga0318497_105400911	3300031805	Soil	AAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERST
Ga0310917_109672641	3300031833	Soil	MTVLIEPFASVYYDRSRLGVIFARGRNGFEAYAADDHSLGLLPSPRKAAAAITTTRPWIAERSA
Ga0318517_100163423	3300031835	Soil	MSVPSEPFAAVYEDRNRLGVIVVLTGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMTAEY
Ga0318527_102495231	3300031859	Soil	MTVLIEPFASVYYDRRLGVIFARGRNGFEAYAADDHSLGLLPSPRKAAAAITTTRPW
Ga0306921_126827711	3300031912	Soil	VLIEPFASVYYDRRLGVIFARGRNGFEAYAADDHSLGLLPSRRKAAAAITTTRPWIAERS
Ga0310912_113847962	3300031941	Soil	YYDRSRLGVIFARGRNGFEAYAADDHSLGLLPSPRKAAAAITTTRPWIAERSA
Ga0310916_104347043	3300031942	Soil	MPVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMMRPWATQ
Ga0310916_113779621	3300031942	Soil	MPVPSEPFAAVYEDKNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMTSQYTAR
Ga0310916_116947571	3300031942	Soil	MPVPSEPFAAVYEDRNRIGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWVAEP
Ga0310913_110486631	3300031945	Soil	AMPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERST
Ga0310910_113506511	3300031946	Soil	PFASVYYDRSRLGVIFARGRNGFEAYAADDHSLGLFPSPRKAAAAITTTRPWIAERSA
Ga0310909_105936471	3300031947	Soil	MRIVLSAPSEPFAAVYEDRNRLGVIVARTGRAGFEAYAADDHCLRLFPTPREAAAAMTMARPW
Ga0318531_102824051	3300031981	Soil	TGRGGFEAYAADDHCLGLFPTPRKAAAAITMMRPWATQKPQGQTPAQSADPH
Ga0306922_114149401	3300032001	Soil	FASVYYDRSRLGVIFARGRNGFEAYAADDHSLGLFPSPRKAAAAITTTRPWIAERSA
Ga0310911_100521384	3300032035	Soil	MPVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPRKAAAAITMMR
Ga0318549_100129783	3300032041	Soil	MSVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMTAEY
Ga0318549_103579941	3300032041	Soil	MLAFAAVYEDRNRLGVIAARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAEHS
Ga0318556_106626382	3300032043	Soil	AAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTPREAAAAITTTRPWIAERSA
Ga0318506_101912101	3300032052	Soil	MSVPSEPFAAVYEDRNRLGVIVARTGRGGFEAYAADDHCLGLFPTPREAAAAITMA
Ga0318575_105572111	3300032055	Soil	LGGYRGRAPAMPVPSEPFAAVYEDRNRLGVIVARIGRGGFEAYAADDHCLGLFPTLHEAAAAITTTRPRVAERST
Ga0318533_100376716	3300032059	Soil	MSIWHIIMLAFAAVYEDRNRLGVIAARIGRGGFEAYAADDHCLGLFPTPREAAAAITTMRPWVAE
Ga0318510_104913522	3300032064	Soil	MPSEPFAAVYEDRNRLGVIVARFEAYATDDHCLGLFPTPHEAAAAITMARPW
Ga0318514_100431841	3300032066	Soil	MSVPSEPFAAVYEDRNRLGVIVVLTGRGGFEAYAADDHCLGLFPTPREAAAAITMARPWVARMT
Ga0318540_103983261	3300032094	Soil	MPVASEPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMT
Ga0318540_105455232	3300032094	Soil	EPFASVYEERNRLGVIVARSGRGGFEAYAADDHCLGLFLTPREAAAAITMTRPWVGRTELSQLANC
Ga0306920_1001501132	3300032261	Soil	MPIPSEPFAAVYEDRNRLGVIVARTGRGGFEAYATDDHCLGLFPSPRKAAAAITMTRPWVAQKTAGTDPNAVD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080952

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences